[Freesurfer] FastSurfer with FreeSurfer version 7.1.0?

[Billah, Tashrif]

Hi Barbara and Martin,

I didn't have any problem running FastSurfer with FreeSurfer 7.1.0 either.

Best,
Tashrif

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Re: [Freesurfer] FastSurfer with FreeSurfer version 7.1.0?

[Martin Reuter]

Hi Barbara, 

I think you are asking to run FastSurfer and source FS7.1 binaries instead of 
the recommended 6.0. for the surface processing part.

This may work, but it is not recommended. We only tested FastSurfer in 
combination with 6.0. as described in the paper. So if you use 7.1 you are on 
your own. 

Eventually we plan to upgrade FastSurfer to also run with 7.1, which also 
requires to modify the surface processing script to better represent the steps 
that 7.1 is performing in recon-all. 
Initial tests of this however did not show improvements. So better stick with 
6.0 for now. 

Also please note that FastSurfer questions should currently be asked on the 
FastSurfer GitHub Issue page https://github.com/deep-mi/fastsurfer 
  

Best, Martin


> On 20. Aug 2020, at 15:59, Barbara Kreilkamp  wrote:
> 
>External Email - Use Caution
> 
> Dear all,
> 
> I noticed FastSurfer also seems to run with a 7.1.0 FS version.
> 
> Or is there any reason not to do this?
> 
> Thank you,
> 
> Kind wishes,
> Barbara
> 
> 
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Re: [Freesurfer] FastSurfer with FreeSurfer version 7.1.0?

[Fischl, Bruce]

Hi Barbara

We run a *ton* of tests on thousands of subjects from different scanners and 
different kinds of pathology before we do a major release. This hasn't been 
done yet with fastsurfer as it is a huge amount of work

Cheers
Bruce

-Original Message-
From: freesurfer-boun...@nmr.mgh.harvard.edu 
 On Behalf Of Barbara Kreilkamp
Sent: Thursday, August 20, 2020 10:00 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] FastSurfer with FreeSurfer version 7.1.0?

External Email - Use Caution

Dear all,

I noticed FastSurfer also seems to run with a 7.1.0 FS version.

Or is there any reason not to do this?

Thank you,

Kind wishes,
Barbara


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[Freesurfer] FastSurfer with FreeSurfer version 7.1.0?

[Barbara Kreilkamp]

External Email - Use Caution

Dear all,

I noticed FastSurfer also seems to run with a 7.1.0 FS version.

Or is there any reason not to do this?

Thank you,

Kind wishes,
Barbara


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