Re: [Freesurfer] Generating Mean thickness surface file for volume ROI mask

2017-10-16 Thread Douglas Greve
May the ROI to the surface using mri_vol2surf, then use mri_segstats to 
extract the mean value



On 10/13/17 4:09 PM, Dev vasu wrote:

Dear all,

I have a   ROI mask volume file and i would like to generate Mean 
cortical thickness surface file (i.e lh.ROI.thickness.fsaverage.mgh 
and rh.ROI.thickness.fsaverage.mgh) , could some one guide me how i 
could obtain such file.


I have 120 subjects and I have done recon-all for all subjects.


Thanks
Vasudev


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[Freesurfer] Generating Mean thickness surface file for volume ROI mask

2017-10-13 Thread Dev vasu
Dear all,

I have a   ROI mask volume file and i would like to generate Mean cortical
thickness surface file (i.e lh.ROI.thickness.fsaverage.mgh and
rh.ROI.thickness.fsaverage.mgh) , could some one guide me how i could
obtain such file.

I have 120 subjects and I have done recon-all for all subjects.


Thanks
Vasudev
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https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.