Re: [Freesurfer] How to find the difference between to different fMRI datasets?
On 03/04/2016 06:01 AM, Silas wrote: > Thanks Douglas! > > 1 - I have two functional files per subject (.mgh). Is it possible to insert > two files per subject in mris_preproc? In my former functional analysis I > haven't concatenated my data using a FSGD-file when running mris_preproc. Are these volumes or surfaces? If volumes, get a registration matrix using bbregister, then run mri_vol2surf specifying fsaverage as the target subject. If a surface, then use mri_surf2surf. > > 2 - Can you calculate the difference between two functional data sets (on the > fsaverage) before starting the group analysis stream? E.g. by subtracting the > files? Yes, fscalc file1.mgh sub file2.mgh -o diff.mgh > > Best, Silas > > > From: freesurfer-boun...@nmr.mgh.harvard.edu > on behalf of Douglas N Greve > > Sent: Thursday, March 3, 2016 6:19 PM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] How to find the difference between to different > fMRI datasets? > > Create a contrast between the two conditions > > On 03/01/2016 01:27 AM, Silas wrote: >> Dear FreeSurfer team, >> >> >> Thank you for all your help so far! >> >> >> I would like to visualize the difference between two fMRI data sets. >> >> Data set1: Cortical activation during movement of a finger. >> >> Data set2: Cortical activation during movement of a finger different >> from the first finger. >> >> >> How can i perform this operation? >> >> >> Best, Silas >> >> >> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] How to find the difference between to different fMRI datasets?
Thanks Douglas! 1 - I have two functional files per subject (.mgh). Is it possible to insert two files per subject in mris_preproc? In my former functional analysis I haven't concatenated my data using a FSGD-file when running mris_preproc. 2 - Can you calculate the difference between two functional data sets (on the fsaverage) before starting the group analysis stream? E.g. by subtracting the files? Best, Silas From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Douglas N Greve Sent: Thursday, March 3, 2016 6:19 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] How to find the difference between to different fMRI datasets? Create a contrast between the two conditions On 03/01/2016 01:27 AM, Silas wrote: > > Dear FreeSurfer team, > > > Thank you for all your help so far! > > > I would like to visualize the difference between two fMRI data sets. > > Data set1: Cortical activation during movement of a finger. > > Data set2: Cortical activation during movement of a finger different > from the first finger. > > > How can i perform this operation? > > > Best, Silas > > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] How to find the difference between to different fMRI datasets?
Create a contrast between the two conditions On 03/01/2016 01:27 AM, Silas wrote: > > Dear FreeSurfer team, > > > Thank you for all your help so far! > > > I would like to visualize the difference between two fMRI data sets. > > Data set1: Cortical activation during movement of a finger. > > Data set2: Cortical activation during movement of a finger different > from the first finger. > > > How can i perform this operation? > > > Best, Silas > > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
[Freesurfer] How to find the difference between to different fMRI datasets?
Dear FreeSurfer team, Thank you for all your help so far! I would like to visualize the difference between two fMRI data sets. Data set1: Cortical activation during movement of a finger. Data set2: Cortical activation during movement of a finger different from the first finger. How can i perform this operation? Best, Silas ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
