Re: [Freesurfer] How to measure the cortical thickness in tumor patients?

2019-10-09 Thread Bruce Fischl

Hi James

I think the -lh/-rh flags are for processing single (ex vivo) hemis, not 
for only processing one hemi in a whole-brain image. If you want to erase 
the hemi with the tumor it will probably work


cheers
Bruce
On Wed, 9 Oct 2019, 王子谦 
wrote:




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Dear developers,
right now I'm trying to measure the cortical thickness of the right
hemisphere in the left side tumor patients. Here I met some problem. Since
the complex intensities in the tumor, it makes the 'recon-all -all' command
to be very time consuming(3 days per subject). Do you have any experience
dealing with the tumor patients? 
I also tried the '-lh' flag, but there is only one file named
'rh.curv.stats' in stats folder.  The command is:recon-all -s 130 -i 130.nii
-qcache -3T -hemi rh -all

Do you have any idea about where the problem is?

Best wishes,
James

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[Freesurfer] How to measure the cortical thickness in tumor patients?

2019-10-09 Thread 王子谦
External Email - Use Caution

Dear developers,

right now I'm trying to measure the cortical thickness of the right
hemisphere in the left side tumor patients. Here I met some problem. Since
the complex intensities in the tumor, it makes the 'recon-all -all' command
to be very time consuming(3 days per subject). Do you have any experience
dealing with the tumor patients?
I also tried the '-lh' flag, but there is only one file named
'rh.curv.stats' in stats folder.  The command is:recon-all -s 130 -i
130.nii -qcache -3T -hemi rh -all

Do you have any idea about where the problem is?

Best wishes,
James
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