Dear Shane,
use this command:
mri_segstats --annot my_subject_id lh aparc --i
$SUBJECTS_DIR/my_subject_id/surf/lh.pial_lgi --sum lh.aparc.pial_lgi.stats
Look at the info on FreeSurfer wiki:
https://surfer.nmr.mgh.harvard.edu/fswiki/LGI
Antonin Skoch
Hi Freesurfer,
How can I get the LGI measurements for each brain region in Desikan atlas?
Instead of getting thickness with aparcstats2table, I want the gyrification
instead.Thank you.
Cheers,
Shane___
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