Re: [Freesurfer] Map label from lh to rh
Thanks Doug that worked great! From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [gr...@nmr.mgh.harvard.edu] Sent: Tuesday, March 01, 2016 15:33 To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Map label from lh to rh It does not. You can run mris_left_right_register. You will need to use mris_apply_reg instead of mri_label2label. See below. run with --help to get docs ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mris_apply_reg On 02/25/2016 04:28 PM, Makaretz, Sara Johanna wrote: > Hi, I want to map a label from one hemi to the other (all on > fsaverage). I tried mri_label2label: > > mri_label2label --s fsaverage --srchemi lh --trghemi rh --srclabel > lh.a.label --trglabel rh.flipped_lh.a.label --regmethod surface > > but I think I need to specify a reg file to go between hemispheres, > does this exist somewhere? an error message kindly pointed out that > this one does not exist: > /usr/local/freesurfer/stable5_3_0/subjects/fsaverage/surf/rh.lh.sphere.reg > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] Map label from lh to rh
It does not. You can run mris_left_right_register. You will need to use mris_apply_reg instead of mri_label2label. See below. run with --help to get docs ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mris_apply_reg On 02/25/2016 04:28 PM, Makaretz, Sara Johanna wrote: > Hi, I want to map a label from one hemi to the other (all on > fsaverage). I tried mri_label2label: > > mri_label2label --s fsaverage --srchemi lh --trghemi rh --srclabel > lh.a.label --trglabel rh.flipped_lh.a.label --regmethod surface > > but I think I need to specify a reg file to go between hemispheres, > does this exist somewhere? an error message kindly pointed out that > this one does not exist: > /usr/local/freesurfer/stable5_3_0/subjects/fsaverage/surf/rh.lh.sphere.reg > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
[Freesurfer] Map label from lh to rh
Hi, I want to map a label from one hemi to the other (all on fsaverage). I tried mri_label2label: mri_label2label --s fsaverage --srchemi lh --trghemi rh --srclabel lh.a.label --trglabel rh.flipped_lh.a.label --regmethod surface but I think I need to specify a reg file to go between hemispheres, does this exist somewhere? an error message kindly pointed out that this one does not exist: /usr/local/freesurfer/stable5_3_0/subjects/fsaverage/surf/rh.lh.sphere.reg ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
