Hi Mohammadi-Nejad,
The creation of the non-linear deformation field will require more memory
than what you currently have and that is causing the problem. Is there any
way you can assign twice (or at least 1.5x) as much memory to this process
as you are currently using?
Lilla
On Mon, 29 Sep 2014, Ali-Reza Mohammadi-Nejad wrote:
Thank you!
The command is : mri_cvs_register --mov 001 --template 000.
The error is:
[0]PETSC ERROR: - Error Message
[0]PETSC ERROR: Out of memory. This could be due to allocating
[0]PETSC ERROR: too large an object or bleeding by not properly
[0]PETSC ERROR: destroying unneeded objects.
[0]PETSC ERROR: Memory allocated 0 Memory used by process -2147483648
[0]PETSC ERROR: Try running with -malloc_dump or -malloc_log for info.
[0]PETSC ERROR: Memory requested 2391628012!
Also in the attached file you can find the log of this command.
Best regards,
Mohammadi-Nejad
On Monday, September 29, 2014 2:12 PM, Lilla Zollei
lzol...@nmr.mgh.harvard.edu wrote:
Hi Mohammadi-Nejad,
Could you include the command that you submitted and the error message and
log file from when the process terminated?
Lilla
On Mon, 29 Sep 2014, Ali-Reza Mohammadi-Nejad wrote:
Hi
I am trying to do an mri_cvs_register for two subjects analyzed with FS-5.1.0
on a 64-bit CentOS linux vmware on a 64 bit windows 7 with 16GB memory. I am
running a signle mri_cvs_register and after certain time the process terminates
with out of memory error.
I have done this work a lot of times with different preprocessed subjects.
Could you please let me to know that, How can I solve this problem?
Best regards,
Mohammadi-Nejad
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
