it sounds like you ran out of memory. Were other things running on the
machine at the same time? How much ram does it have?
On Mon, 6 Jul 2015, Park, Jung Mi wrote:
Hello Freesurfer expert
Recon abruptly terminated with error message
from the recon-all. log:
#@# Skull Stripping Mon Jul 6 13:16:25 EDT 2015
/autofs/cluster/scratch/monday/jungmi/anat_subjects/r0401AG/mri
mri_watershed -keep brainmask.auto.mgz brainmask.mgz brainmask.mgz -T1
-brain_atlas
/usr/local/freesurfer/stable5_3_0/average/RB_all_withskull_2008-03-26.gca
transforms/talairach_with_skull.lta T1.mgz brainmask.auto.mgz
Keeping brain edits brainmask.auto.mgz brainmask.mgz
Mode: T1 normalized volume
Mode: Use the information of atlas (default parms, --help for
details)
*
The input file is T1.mgz
The output file is brainmask.auto.mgz
Weighting the input with atlas information before watershed
Killed
Linux gencess 2.6.32-504.1.3.el6.x86_64 #1 SMP Tue Nov 11 17:57:25 UTC 2014
x86_64 x86_64 x86_64 GNU/Linux
recon-all -s r0401AG exited with ERRORS at Mon Jul 6 13:16:52 EDT 2015
---
How can I complete recon-all -all ?
Thank you in advance.
J. Mi
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
