Re: [Freesurfer] Restricting ROI Analysis
no doug On 05/13/2013 11:16 AM, Jon Wieser wrote: it there a way to mask the data before running the Qdec analysis on it? - Original Message - From: Douglas Greve gr...@nmr.mgh.harvard.edu To: freesurfer@nmr.mgh.harvard.edu Sent: Sunday, May 12, 2013 11:24:12 PM Subject: Re: [Freesurfer] Restricting ROI Analysis Hi Skyler, I don't think we have the ability to restrict the analysis to an ROI in QDEC. You can do it with mri_glmfit with the --mask or --label option. doug On 5/12/13 4:25 PM, Skyler Gabriel Shollenbarger wrote: Hi everyone, We are trying to restrict an analysis using Qdec to a region of interest. We have successfully created the ROI mask, however the analysis continues to be run on the entire brain. Any help is greatly appreciated. Thanks, Skyler and Jon ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
[Freesurfer] Restricting ROI Analysis
Hi everyone, We are trying to restrict an analysis using Qdec to a region of interest. We have successfully created the ROI mask, however the analysis continues to be run on the entire brain. Any help is greatly appreciated. Thanks, Skyler and Jon -- Skyler G. Shollenbarger Graduate Student - UWM Brain Lab Clinical Psychology Neurospychology University of Wisconsin-Milwaukee ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] Restricting ROI Analysis
Hi Skyler, I don't think we have the ability to restrict the analysis to an ROI in QDEC. You can do it with mri_glmfit with the --mask or --label option. doug On 5/12/13 4:25 PM, Skyler Gabriel Shollenbarger wrote: Hi everyone, We are trying to restrict an analysis using Qdec to a region of interest. We have successfully created the ROI mask, however the analysis continues to be run on the entire brain. Any help is greatly appreciated. Thanks, Skyler and Jon ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
