Re: [Freesurfer] TRACULA and priors problem

2017-03-16 Thread Yendiki, Anastasia
Hi Jürgen - If your subjects' freesurfer directories have the standard 
structure as it comes out of recon-all, then you probably have a different 
problem than the one in that older thread. Have you changed the recon-all 
output directories in some way?

Best,
a.y


From: freesurfer-boun...@nmr.mgh.harvard.edu 
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Juergen Haenggi 
[j.haen...@psychologie.uzh.ch]
Sent: Friday, February 24, 2017 11:14 AM
To: Freesurfer Mailinglist
Subject: [Freesurfer] TRACULA and priors problem

Dear TRACULA experts

I run TRACULA FS 6.0 on a Mac and get the following error:

#@# Priors Fri Feb 24 17:11:18 CET 2017
/tmp/subj33.interpreter_control_01/.15208.txt: No such file or directory.


In the FS archive I found the following email

https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg50778.html

However, in my situation, the directories of the FS preprocessed subjects are 
in /Applications/freesurfer/subjects folder, and therefore to solution proposed 
in the email (make symbolic links) does not make sense for me.

Is there another work around?

Thanks in advance
Regards
Jürgen

-
University of Zurich
Dr. Jürgen Hänggi, Ph.D.
Department of Psychology
Division Neuropsychology
Binzmuehlestrasse 14, PO Box 25
8050 Zurich, Switzerland

0041 44 635 73 97 (phone office)
0041 76 445 86 84 (phone mobile)
0041 44 635 74 09 (fax office)
BIN 4.D.04 (office room number)

j.haen...@psychologie.uzh.ch (email)
http://www.psychologie.uzh.ch/neuropsy/ (website)
http://www.juergenhaenggi.ch (private website)

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[Freesurfer] TRACULA and priors problem

2017-02-24 Thread Juergen Haenggi
Dear TRACULA experts

I run TRACULA FS 6.0 on a Mac and get the following error:

#@# Priors Fri Feb 24 17:11:18 CET 2017
/tmp/subj33.interpreter_control_01/.15208.txt: No such file or directory.


In the FS archive I found the following email

https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg50778.html

However, in my situation, the directories of the FS preprocessed subjects are 
in /Applications/freesurfer/subjects folder, and therefore to solution proposed 
in the email (make symbolic links) does not make sense for me.

Is there another work around?

Thanks in advance
Regards
Jürgen

-
University of Zurich
Dr. Jürgen Hänggi, Ph.D.
Department of Psychology
Division Neuropsychology
Binzmuehlestrasse 14, PO Box 25 
8050 Zurich, Switzerland

0041 44 635 73 97 (phone office)
0041 76 445 86 84 (phone mobile)   
0041 44 635 74 09 (fax office)
BIN 4.D.04 (office room number) 

j.haen...@psychologie.uzh.ch (email)
http://www.psychologie.uzh.ch/neuropsy/ (website)
http://www.juergenhaenggi.ch (private website)   

This e-mail (and any attachment/s) contains confidential and/or privileged
information. If you are not the intended recipient (or have received this
e-mail in error) please notify the sender immediately and destroy this
e-mail. Any unauthorised copying, disclosure or distribution of the
material in this e-mail is strictly forbidden.
-





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Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.