Re: [Freesurfer] X11 / mesa update broke tkmedit snapshots

[Flavin, John]

I should add that we're running tkmedit using xvfb since the process is 
automated and runs without a physical screen.

Flavin

> On Jun 22, 2016, at 4:15 PM, Flavin, John  wrote:
>
> Hi all,
>
> I run the pipelines for the CNDA and various other XNAT installations. We 
> recently updated some of our packages, and our Freesurfer snapshots 
> (generated with tkmedit using a tcl script) have broken.
>
> We're on Centos 6.8. The package that seems to cause the breakage is one of 
> the mesa packages, probably mesa-libGL, upgraded from 10.4.3 to 11.0.7. (But 
> it's hard to be sure that's the exact one because of the dependencies.) That 
> mesa package gets pulled in as a dependency to an X11 update, specifically 
> xorg-x11-server-Xorg upgraded from 1.15.0 to 1.17.4.
>
> We're working now on figuring out a strategy to downgrade these, and some 
> others. It's a little hairy because there are a lot of dependent packages and 
> a lot of affected machines.
>
> If anyone else has seen this, or knows how to fix it, I'd love to hear from 
> you.
>
> John Flavin
>
>
>
> 
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The materials in this message are private and may contain Protected Healthcare 
Information or other information of a sensitive nature. If you are not the 
intended recipient, be advised that any unauthorized use, disclosure, copying 
or the taking of any action in reliance on the contents of this information is 
strictly prohibited. If you have received this email in error, please 
immediately notify the sender via telephone or return mail.

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[Freesurfer] X11 / mesa update broke tkmedit snapshots

[Flavin, John]

Hi all,

I run the pipelines for the CNDA and various other XNAT installations. We 
recently updated some of our packages, and our Freesurfer snapshots (generated 
with tkmedit using a tcl script) have broken.

We're on Centos 6.8. The package that seems to cause the breakage is one of the 
mesa packages, probably mesa-libGL, upgraded from 10.4.3 to 11.0.7. (But it's 
hard to be sure that's the exact one because of the dependencies.) That mesa 
package gets pulled in as a dependency to an X11 update, specifically 
xorg-x11-server-Xorg upgraded from 1.15.0 to 1.17.4.

We're working now on figuring out a strategy to downgrade these, and some 
others. It's a little hairy because there are a lot of dependent packages and a 
lot of affected machines.

If anyone else has seen this, or knows how to fix it, I'd love to hear from you.

John Flavin




The materials in this message are private and may contain Protected Healthcare 
Information or other information of a sensitive nature. If you are not the 
intended recipient, be advised that any unauthorized use, disclosure, copying 
or the taking of any action in reliance on the contents of this information is 
strictly prohibited. If you have received this email in error, please 
immediately notify the sender via telephone or return mail.

___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.