Re: [Freesurfer] convert gii to mgh/nii.gz (freesurfer surface)
External Email - Use Caution You will need to convert it to FreeSurfer surface format (instead of MGH/NIFTI, which are volume formats), the standard one is the binary surface format. Assuming your file is 'lh.white.gii': mris_convert lh.white.gii lh.white or to use the less common ASCII version (I would not recommend that): mris_convert lh.white.gii lh.white.asc Best, Tim > On April 17, 2020 at 12:38 PM Marina Fernández > wrote: > > > External Email - Use Caution > > Hi experts, > > How can I convert a surface in .gii format to a surface in .mgh or nii.gz > format? > > I tried with mris_convert but it doesn't work. > > > Best regards, > Marina > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Dr. Tim Schäfer Postdoc Computational Neuroimaging Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] convert gii to mgh/nii.gz (freesurfer surface)
Hi Marina can you include command line and full screen output (in text!) so we can understand what you mean by "it doesn't work". Also, note that .mgh/.nii.gz are volume formats, not surface ones, so you can't convert a surface to them. You will need to use our surface format cheers Bruce On Fri, 17 Apr 2020, Marina Fernández wrote: External Email - Use Caution Hi experts, How can I convert a surface in .gii format to a surface in .mgh or nii.gz format? I tried with mris_convert but it doesn't work. Best regards, Marina ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
[Freesurfer] convert gii to mgh/nii.gz (freesurfer surface)
External Email - Use Caution Hi experts, How can I convert a surface in .gii format to a surface in .mgh or nii.gz format? I tried with mris_convert but it doesn't work. Best regards, Marina ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
