Re: [Freesurfer] freesurfer on debian

2005-11-10 Thread Bruce Fischl

Hi Darren,

we can't do away with the license, otherwise the hospital would line us all 
up and shoot us. We won't be able to post a compilable version for a while 
as we need to get rid of things that we are not allowed to post source for, 
which is a slow process (that has to go on in peoples' spare time, as we 
have no dedicated resources for it). I think we will post a "read-only" 
version that won't compile, or rather, while compile but will have some 
unresolved symbols in it in the near future. We do have make/configure 
working locally, so installing on other platforms shouldn't be too bad. We 
also have installed and run on debian, or at least the MIT version of it.


We also had some rpms, but haven't rebuilt them in a while.

cheers,
Bruce


On Thu, 10 Nov 2005, Darren Weber wrote:



If freesurfer is adopting some kind of open-source license (hoorrah!), can we 
do away with the requirement for a license file?  Are there any 
components/dependencies of freesurfer that are not open-source?


Does anyone have detailed instructions for
a) compiling freesurfer?
b) installation of freesurfer on debian?

Is anyone working on creating a debian package for freesurfer?
For that matter, has anyone created any rpm packages for freesurfer?

Debian already has a package for minc tools, see
http://packages.debian.org/stable/science/minc-tools
but this does not include all the MNI tools (eg, n3 and mritotal).

Comments, suggestions all welcome.

Thanks, Darren

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Re: [Freesurfer] freesurfer on debian

2005-11-10 Thread Kevin Teich
If freesurfer is adopting some kind of open-source license (hoorrah!), 
can we do away with the requirement for a license file?


We use the license file requests to keep track of how many people are 
using FreeSurfer, so probably not.


Are there any components/dependencies of freesurfer that are not 
open-source?


When it releases, there won't be. The main requirements are things like 
the MNI tools, GSL, and tcl/tk/tix/blt, but most of those are installed by 
default on most Linux distros.



Does anyone have detailed instructions for
a) compiling freesurfer?
b) installation of freesurfer on debian?


We will include instructions with the release. It will be a standard 
autoconf setup (configure && make && make install). I'm pretty sure it 
should compile on Debian without a problem.



Is anyone working on creating a debian package for freesurfer?
For that matter, has anyone created any rpm packages for freesurfer?


That isn't in the works right now, but maybe somebody can make packages 
for their favorite distribution(s) and share with the rest of us. :)



Debian already has a package for minc tools, see
http://packages.debian.org/stable/science/minc-tools
but this does not include all the MNI tools (eg, n3 and mritotal).


We're currently compiling against 1.4, if that helps you plan ahead.

--
Kevin Teich

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[Freesurfer] freesurfer on debian

2005-11-10 Thread Darren Weber


If freesurfer is adopting some kind of open-source license (hoorrah!), 
can we do away with the requirement for a license file?  Are there any 
components/dependencies of freesurfer that are not open-source?


Does anyone have detailed instructions for
a) compiling freesurfer?
b) installation of freesurfer on debian?

Is anyone working on creating a debian package for freesurfer?
For that matter, has anyone created any rpm packages for freesurfer?

Debian already has a package for minc tools, see
http://packages.debian.org/stable/science/minc-tools
but this does not include all the MNI tools (eg, n3 and mritotal).

Comments, suggestions all welcome.

Thanks, Darren

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