it says it cannot find /XYZ/2123.nii
probably this file does not exist
On 2/28/19 10:09 AM, Boris Rauchmann wrote:
>
> External Email - Use Caution
>
> Hi FreeSurfer community,
>
> when I run mri_coreg I get the following error.
> /XYZ/2123/mri/brainmask.mgz is in the specified location.
>
> Can you help me with this?
>
> Thanks!
> Boris
>
> mri_coreg --s 2123 --mov /XYZ/2123.nii --reg 2123.reg.lta
> Could not set locale
> No such file or directory
> Could not set locale
>
> $Id: mri_coreg.c,v 1.27 2016/04/30 15:11:49 greve Exp $
> cwd /home/demenzbild
> cmdline mri_coreg --s 2123 --mov /XYZ/2123.nii --reg 2123.reg.lta
> sysname Linux
> hostname XXX
> machine x86_64
> user d
> dof 6
> nsep 2
> cras0 1
> ftol 0.00
> linmintol 0.001000
> bf 1
> bflim 30.00
> bfnsamp 30
> SmoothRef 0
> SatPct 99.99
> MovOOB 0
> optschema 1
> Reading in mov /XYZ/2123.nii
> WARNING: 78694 NaNs found in volume /XYZ/2123.nii...
>
> No such file or directory
> Reading in ref /XYZ/2123/mri/brainmask.mgz
> mghRead(/XYZ/2123/mri/brainmask.mgz, -1): could not open file
>
>
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