Hi Andrade,
This probably has to do with SIP being enabled, which blocks libraries stored
in /usr. I would suggest disabling SIP and rerunning to see if that fixes
things:
http://osxdaily.com/2015/10/05/disable-rootless-system-integrity-protection-mac-os-x/
best,
Andrew
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Renew Andrade
Sent: Thursday, October 24, 2019 11:31 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] mri_cvs_register error while diffusion imaging
processing
External Email - Use Caution
Dear FreeSurfer experts:
I am trying to run Spatial Normalization but I cannot get the morph file
because I get this error. I don’t know what to do with these libraries. Do I
need to copy them from where they are in freesurfer to somewhere else in the
Mac?
sh-3.2# mri_cvs_register --mov IXI_25_Guys_T1
Using the CVS template as registration target...
The outdir:
/Volumes/FREESURFER/freesurfer_preprocessed/IXI_25_Guys_T1/cvs
Log file is
/Volumes/FREESURFER/freesurfer_preprocessed/IXI_25_Guys_T1/cvs/IXI_25_Guys_T1_to_cvs_avg35.mri_cvs_register.1910241722.log
Thu Oct 24 17:22:55 CEST 2019
--mov IXI_25_Guys_T1
$Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $
Renes-Air.home
Darwin Renes-Air.home 19.0.0 Darwin Kernel Version 19.0.0: Wed Sep 25 20:18:50
PDT 2019; root:xnu-6153.11.26~2/RELEASE_X86_64 x86_64
asegfname aseg
Using m3z type morph files.
dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address
Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib
Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: ___emutls_get_address
Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib
Expected in: /usr/lib/libSystem.B.dylib
Abort
Sincerely,
Andrade.
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
