Hi Jürgen,
turns out this was a display but in tksurfer, which I fixed. It would
stop displaying after the 3000th annotation unit. If you tell us what
os/hardware you are running on we can send you a new version.
cheers,
Bruce
On Sat, 17 Jan
2009, Jürgen Hänggi wrote:
Dear FS experts
I have run the following command:
mris_divide_parcellation Ego_Mean3_FineParc rh aparc.annot 100 rh_annot_100
But cannot read the output file (see attachment) with tksurfer
% [juergen-haenggis-mac-pro:subjects/Ego_Mean3_FineParc/label]
juergenhaenggi% tksurfer Ego_Mean3_FineParc rh inflated -annot rh_annot_100
surfer: current subjects dir: /Applications/freesurfer/subjects
surfer: not in scripts dir == using cwd for session root
surfer: session root data dir ($session) set to:
surfer: /Applications/freesurfer/subjects/Ego_Mean3_FineParc/label
surfer: Reading header info from
/Applications/freesurfer/subjects/Ego_Mean3_FineParc/mri/T1.mgz
surfer: vertices=151401, faces=302798
could not read annot file
/Applications/freesurfer/subjects/Ego_Mean3_FineParc/surf/../label/rh.rh_ann
ot_100.annot
No such file or directory
ERROR: could not load rh_annot_100
surfer: single buffered window
surfer: tkoInitWindow(Ego_Mean3_FineParc)
surfer: using interface /Applications/freesurfer/lib/tcl/tksurfer.tcl
Reading /Applications/freesurfer/lib/tcl/tkm_common.tcl
Reading /Applications/freesurfer/lib/tcl/tkm_wrappers.tcl
Reading /Applications/freesurfer/lib/tcl/fsgdfPlot.tcl
Reading /Applications/freesurfer/lib/tcl/tkUtils.tcl
Successfully parsed tksurfer.tcl
reading white matter vertex locations...
If I provided tksurfer the whole path to the annot file, the error still
occurred.
Thanks in advance
Regards
Juergen
--
Juergen Haenggi
Ph.D. (Dr. des.)
Division Neuropsychology
Institute of Psychology
University of Zurich
Binzmuehlestrasse 14, PO Box 25
8050 Zurich, Switzerland
0041 44 635 73 97 (phone office)
0041 76 445 86 84 (phone mobile)
0041 44 635 74 09 (fax office)
BIN 4.D.04 (office room number)
j.haenggi[at]psychologie.uzh.ch (email)
http://www.psychologie.uzh.ch/neuropsy/ (website)
http://www.juergenhaenggi.ch (private website)
--
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