Re: [Freesurfer] recon-all -s exited with ERRORS

[Douglas N. Greve]

you do not need the white or pial surfaces, just the orig.nofix.

On 6/19/2022 5:17 PM, Wang, Yu wrote:


External Email - Use Caution

Hi freesurfer expects,

  I have tried to use this way to solve the problem, but it did not 
work because I don’t have the files like lh.pial. But I tried to use 
the command “recon-all -s c1NT816 -I smwrc1NT816_screen_mpr.nii 
-no-ants-n4  -all ”. It seems this command can solve the problems and 
it shows “finished without error” . But the segmentation looks very 
strange on the freeview and I did not know what is going wrong. And I 
will attach the strange figure with this email.


Thank you for answering my previous questions and looking forward to 
your reply.


Thanks in advanced,

Yu

*From: *freesurfer-boun...@nmr.mgh.harvard.edu 
 on behalf of Douglas N. Greve 


*Date: *Sunday, June 19, 2022 at 9:50 AM
*To: *freesurfer@nmr.mgh.harvard.edu 
*Subject: *Re: [Freesurfer] recon-all -s exited with ERRORS

It looks like there are a lot of defects as I see a lot of these messages

An extra large defect has been detected...
This often happens because cerebellum or dura has not been removed 
from wm.mgz.

This may cause recon-all to run very slowly or crash.
if so, see *MailScanner has detected a possible fraud attempt from 
"secure-web.cisco.com" claiming to be* 
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TopologicalDefect_freeview 
<https://secure-web.cisco.com/1ZQofRODLaENfz_F8BjYcuwTkgaJ_geo9_wYOUwBzvQbXeHuqpJ_K59H1xaLDzsghyZ0z172R9pUKRnuDqFw8Io0LPaEnDxuiol9LC1SsSgw72ZV3cAyfHFVv-VWNmsq2PfdnUxDZGvyKQpBt62X2y18fORQ7aRA1F95OqtdQfzmGox2qdqgDTcoCESQFKDyakRsi-LDGflsy5o9rEV3e-Rfq2BUOWLP3k9MSCsao5IdAwYJNejoxV6alb8lzeYOzjwfu9zL17LLXkHaIZgB-HZYx10IZO6rliDu0zLQ93ddcPUxICWPHdkAuupoauQJd20x22j7E5F7vSjilFdIlp8-6T6Y__icToIgjAadfJj8/https%3A%2F%2Fnam10.safelinks.protection.outlook.com%2F%3Furl%3Dhttps%253A%252F%252Fsurfer.nmr.mgh.harvard.edu%252Ffswiki%252FFsTutorial%252FTopologicalDefect_freeview%26data%3D05%257C01%257Cw.yu1%2540wustl.edu%257Ce6db721793b143e5b35208da520310b4%257C4ccca3b571cd4e6d974b4d9beb96c6d6%257C0%257C0%257C637912470361937470%257CUnknown%257CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%253D%257C3000%257C%257C%257C%26sdata%3DS%252BJcM0fPfTK3noKeAnSvAWOTBK3QsS0zTg5GCHPrIuI%253D%26reserved%3D0>


Try following those instructions

On 6/14/2022 5:37 PM, Wang, Yu wrote:

*External Email - Use Caution *

Hi, FreeSurfer Developers,

 I am attempting to use the recon-all to reconstruction, I
successfully run this command in some subjects, but it also failed
in around 1/3 of subjects. And after running the recon-all of this
1/3 subjects. It will show “mri_watershed error:GLOBAL region of
the brain empty” and I already solve this with the command
“recon-all -skullstrip -no-wsgcaatlas -s smwrc1NT816”. And after
working with this, I tried to use the command “recon-all
-autorecon2 -autorecon3 -s smwrc1NT816” and it shows the output as
without given some detailed reasons:

*recon-all -s smwrc1NT816 exited with ERRORS at Mon Jun 13
13:54:10 CDT 2022*

**

*For more details, see the log file
/Applications/freesurfer/7.2.0/subjects/smwrc1NT816/scripts/recon-all.log*

*To report a problem, seeMailScanner has detected a possible
fraud attempt from "secure-web.cisco.com" claiming to be
http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting

<https://secure-web.cisco.com/1v_YsxsDMyibcPMlMZUDfbXgymjfxHh90qh38K0_TWrGGD9551SzY6sBg5FFlJwSHv8pbv0i0MO2hB6uNbjVr6eMOzXhPDU6Mti288pMLtI8Tl4BFKIoeyYZ293Dp7mK9R9UwgKS2PzcPuWLB4NdWAjNgmRicKVtJ5SALiz_geJ34DRuMUocim0_TaMG22u6QE5VF3V4WOCRTjAUE1UNQRglgWwINlJ0rh77lwxEgyNNiPk5b8288GmI-FfI9J4ZtS01B3GNopUMVlIlE9JNNWklB9ymmPlhDwPXnsDstTOQ2jX6-mH836ThkbEM-LpzIVblkMoQTi_7ODQ9p3_ZCBgxdZLfSNTJkO_4dAiv0qo8/https%3A%2F%2Fnam10.safelinks.protection.outlook.com%2F%3Furl%3Dhttp%253A%252F%252Fsecure-web.cisco.com%252F1iPjG6_yDpeRBXccjdFdxifv54y1GvmJtNQuC-KaFzx3NzAM79VncTDzeOsHzRjZXnNBtfoaUmJp-iqE4rmlb_37cgVnP3yoki6Hp6iDUWG3J7O_20a1Pt0eBKm4QhifNMlGWguI5yCIPrx5roSppTd3PlAL7k5JfTjaFrGD1Ogx4sy6MWpeqn3cWM2ox5FY9fPhWkCMZnY4RcShAJveekgUswk3t5qqqGNBK9kILalsHRBCIKK35oVStKCn7nAaCv0gXMdgLUdoM1OJyAI6Aa6OkZIfE6MM8BVu5_1htGYbtk48IVxo1d8kVfjrOGsnqdjvbyuTBrBrM_T-Y7zKIZA%252Fhttp%25253A%25252F%25252Fsurfer.nmr.mgh.harvard.edu%25252Ffswiki%25252FBugReporting%26data%3D05%257C01%257Cw.yu1%2540wustl.edu%257Ce6db721793b143e5b35208da520310b4%257C4ccca3b571cd4e6d974b4d9beb96c6d6%257C0%257C0%257C637912470361937470%257CUnknown%257CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%253D%257C3000%257C%257C%257C%26sdata%3DMx66dknkFcPaPNtKZAlg%252FTEQtW7UYDTyNs%252Fd%252Fx%252BSbL4%253D%26reserved%3D0>*

I’ve searched over the internet and did not find the reasons and
solutions of my problems. And I will attached the recon-all.log in
case it's of any use.

I try to work out on two

Re: [Freesurfer] recon-all -s exited with ERRORS

[Douglas N. Greve]

It looks like there are a lot of defects as I see a lot of these messages

An extra large defect has been detected...
This often happens because cerebellum or dura has not been removed from 
wm.mgz.

This may cause recon-all to run very slowly or crash.
if so, see 
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TopologicalDefect_freeview


Try following those instructions


On 6/14/2022 5:37 PM, Wang, Yu wrote:


External Email - Use Caution

Hi, FreeSurfer Developers,

 I am attempting to use the recon-all to reconstruction, I 
successfully run this command in some subjects, but it also failed in 
around 1/3 of subjects. And after running the recon-all of this 1/3 
subjects. It will show “mri_watershed error:GLOBAL region of the brain 
empty” and I already solve this with the command “recon-all 
-skullstrip -no-wsgcaatlas -s smwrc1NT816”. And after working with 
this, I tried to use the command “recon-all -autorecon2 -autorecon3 -s 
smwrc1NT816” and it shows the output as without given some detailed 
reasons:


*recon-all -s smwrc1NT816 exited with ERRORS at Mon Jun 13 13:54:10 
CDT 2022*


**

*For more details, see the log file 
/Applications/freesurfer/7.2.0/subjects/smwrc1NT816/scripts/recon-all.log*


*To report a problem, see*MailScanner has detected a possible 
fraud attempt from "secure-web.cisco.com" claiming to be* 
http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting 
*


I’ve searched over the internet and did not find the reasons and 
solutions of my problems. And I will attached the recon-all.log in 
case it's of any use.


I try to work out on two machine, and they show the same problems :

 1. FreeSurfer version: freesurfer-darwin-macOS-7.2.0-20210713-aa8f76b
and freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b
 2. Platform: MacOs 11.4 and ubantu 20.04.4
 3. uname -a:Darwin WANGs-MBP.attlocal.net 20.5.0 Darwin Kernel
Version 20.5.0: Sat May8 05:10:31 PDT 2021;
root:xnu-7195.121.3~9/RELEASE_ARM64_T8101 arm64

or:Linux sulu 5.4.0-113-lowlatency #127-Ubuntu SMP PREEMPT Wed May 18 
15:12:18 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux


 4. recon-all.log: see attached (this one is run by macOS)

I will be appreciated if you can give me a hand with these problems. 
And looking forward to your reply.


Sincerely,

Yu


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[Freesurfer] recon-all -s exited with ERRORS

[Wang, Yu]

External Email - Use Caution

Hi, FreeSurfer Developers,


 I am attempting to use the recon-all to reconstruction, I successfully run 
this command in some subjects, but it also failed in around 1/3 of subjects. 
And after running the recon-all of this 1/3 subjects. It will show 
“mri_watershed error:GLOBAL region of the brain empty” and I already solve this 
with the command “recon-all -skullstrip -no-wsgcaatlas -s smwrc1NT816”. And 
after working with this, I tried to use the command “recon-all -autorecon2 
-autorecon3 -s smwrc1NT816” and it shows the output as without given some 
detailed reasons:



recon-all -s smwrc1NT816 exited with ERRORS at Mon Jun 13 13:54:10 CDT 2022



For more details, see the log file 
/Applications/freesurfer/7.2.0/subjects/smwrc1NT816/scripts/recon-all.log

To report a problem, see 
http://secure-web.cisco.com/15s_oFH-kAftN57mqGI2bcqN1hKf4R5zXE_fPPasU_i9bJaX1BsgAq3K1S_fSTLY76gcIq3maFcAL1Wp2gSj07hGSEscorAynozW2EFSpI67Xebtf8tFFQSLh90SJGCMuqD6heT8WwwyAdjw8MJsfWzyAlePqW7TR2jsYkzdC4GaMhFnxeSamLAx_f3G8DiGpUvmhB7fssKSDdmycwTWW3UwENh74wNf9MQN0DIto_oZqyl-BKP5esesgP3O04RSY36xdr9z0HbBw5_UvX_QPATv58Ic-2BxIBoZJwecOdsfJ6whSNj8wr1XjKu63fWmHyWtfpfdervjU1DtsP2xPzA/http%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FBugReporting


I’ve searched over the internet and did not find the reasons and solutions of 
my problems. And I will attached the recon-all.log in case it's of any use.

I try to work out on two machine, and they show the same problems :

  1.  FreeSurfer version: freesurfer-darwin-macOS-7.2.0-20210713-aa8f76b and 
freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b
  2.  Platform: MacOs 11.4 and ubantu 20.04.4
  3.  uname -a:Darwin WANGs-MBP.attlocal.net 20.5.0 Darwin Kernel Version 
20.5.0: Sat May  8 05:10:31 PDT 2021; root:xnu-7195.121.3~9/RELEASE_ARM64_T8101 
arm64

or: Linux sulu 5.4.0-113-lowlatency #127-Ubuntu SMP PREEMPT Wed May 18 15:12:18 
UTC 2022 x86_64 x86_64 x86_64 GNU/Linux

  1.  recon-all.log: see attached (this one is run by macOS)

I will be appreciated if you can give me a hand with these problems. And 
looking forward to your reply.

Sincerely,
Yu
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Re: [Freesurfer] recon-all -s exited with ERRORS

[Carolina Valencia]

Thanks a lot, it works.
just waiting 24 hours.

Best regards,

Carolina

2011/6/10 rspr...@nmr.mgh.harvard.edu

 Hi Carolina,

 Sorry My bad. I was inaccurate in my previous message.

 -subject should work.

 Assuming that the MPRAGE of your subject is under the following directory:

 /freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig

 set your SUBJECTS_DIR to
 /freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig before
 running recon-all

 setenv SUBJECTS_DIR
 ~/freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig

 recon-all -all -i $SUBJECTS_DIR/MPRAGE.nii.gz -subject
 $SUBJECTS_DIR/hptu_subj001

 This should create a folder where Freesurfer recons will be created:

 cd

 ~/freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig/hptu_subj001

 Best,
 Priti

  Hi Carolina,
 
  -subject is not recognized by Freesurfer...Use -subjid or -s instead.
 
  setenv SUBJECTS_DIR path to tutorial data
 
  recon-all -all -i path to your MPRAGE/MPRAGE.nii.gz -s path to
  freesurfer recons/hptu_subj001
 
  Priti
 
  Hello Freesurfer's users,
 
  I'm starting using FS and I have a problem running recon-all
  I create a folder called hptu_subj001 which contains MPRAGE.nii.gz
  within
  tutorial_subj
  First I convert nii.gz to mgz qith the command:
  recon-all -i MPRAGE.nii.gz -s hptu_subj001
  and then in order to process all, I type:
  recon-all –i 001.mgz –subject hptu_subj001 –all
 
 
 cvalencia-Precision-WorkStation-T3400:~/freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig
  recon-all –i 001.mgz –subject hptu_subj001 –all
  ERROR: Flag  i unrecognized.
   i 001.mgz  subject hptu_subj001  all
  Linux cvalencia-Precision-WorkStation-T3400 2.6.35-28-generic-pae
  #50-Ubuntu
  SMP Fri Mar 18 20:43:15 UTC 2011 i686 GNU/Linux
 
  recon-all -s  exited with ERRORS at Fri Jun 10 12:50:04 COT 2011
 
  then I tried with:
 
 
 cvalencia-Precision-WorkStation-T3400:~/freesurfer/subjects/buckner_data/tutorial_subj
  recon-all –i MPRAGE.nii.gz –subject hptu_subj001 –all
  ERROR: Flag  i unrecognized.
   i MPRAGE.nii.gz  subject hptu_subj001  all
  Linux cvalencia-Precision-WorkStation-T3400 2.6.35-28-generic-pae
  #50-Ubuntu
  SMP Fri Mar 18 20:43:15 UTC 2011 i686 GNU/Linux
 
  recon-all -s  exited with ERRORS at Fri Jun 10 12:36:24 COT 2011
 
  How I can fix this error?
 
  Thanks a lot,
 
  Best regards,
 
  Carolina
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 is
 addressed. If you believe this e-mail was sent to you in error and the
 e-mail
 contains patient information, please contact the Partners Compliance
 HelpLine at
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Re: [Freesurfer] recon-all -s exited with ERRORS

[Leo Souza]

Hi Carolina,

Do you know how can I run Freesurfer just to get some Benchmark Numbers 
and to Check GPU Performance using Cuda?


Thanks,
*Leo Souza*

On 06/13/2011 07:04 AM, Carolina Valencia wrote:

Thanks a lot, it works.
just waiting 24 hours.

Best regards,

Carolina

2011/6/10 rspr...@nmr.mgh.harvard.edu 
mailto:rspr...@nmr.mgh.harvard.edu


Hi Carolina,

Sorry My bad. I was inaccurate in my previous message.

-subject should work.

Assuming that the MPRAGE of your subject is under the following
directory:

/freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig

set your SUBJECTS_DIR to
/freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig
before
running recon-all

setenv SUBJECTS_DIR
~/freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig

recon-all -all -i $SUBJECTS_DIR/MPRAGE.nii.gz -subject
$SUBJECTS_DIR/hptu_subj001

This should create a folder where Freesurfer recons will be created:

cd

~/freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig/hptu_subj001

Best,
Priti

 Hi Carolina,

 -subject is not recognized by Freesurfer...Use -subjid or -s
instead.

 setenv SUBJECTS_DIR path to tutorial data

 recon-all -all -i path to your MPRAGE/MPRAGE.nii.gz -s path to
 freesurfer recons/hptu_subj001

 Priti

 Hello Freesurfer's users,

 I'm starting using FS and I have a problem running recon-all
 I create a folder called hptu_subj001 which contains MPRAGE.nii.gz
 within
 tutorial_subj
 First I convert nii.gz to mgz qith the command:
 recon-all -i MPRAGE.nii.gz -s hptu_subj001
 and then in order to process all, I type:
 recon-all –i 001.mgz –subject hptu_subj001 –all



cvalencia-Precision-WorkStation-T3400:~/freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig
 recon-all –i 001.mgz –subject hptu_subj001 –all
 ERROR: Flag  i unrecognized.
  i 001.mgz  subject hptu_subj001  all
 Linux cvalencia-Precision-WorkStation-T3400 2.6.35-28-generic-pae
 #50-Ubuntu
 SMP Fri Mar 18 20:43:15 UTC 2011 i686 GNU/Linux

 recon-all -s  exited with ERRORS at Fri Jun 10 12:50:04 COT 2011

 then I tried with:



cvalencia-Precision-WorkStation-T3400:~/freesurfer/subjects/buckner_data/tutorial_subj
 recon-all –i MPRAGE.nii.gz –subject hptu_subj001 –all
 ERROR: Flag  i unrecognized.
  i MPRAGE.nii.gz  subject hptu_subj001  all
 Linux cvalencia-Precision-WorkStation-T3400 2.6.35-28-generic-pae
 #50-Ubuntu
 SMP Fri Mar 18 20:43:15 UTC 2011 i686 GNU/Linux

 recon-all -s  exited with ERRORS at Fri Jun 10 12:36:24 COT 2011

 How I can fix this error?

 Thanks a lot,

 Best regards,

 Carolina
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 https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

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Re: [Freesurfer] recon-all -s exited with ERRORS

[Douglas N Greve]

When you run recon-all, it will create a recon-all-status file in the 
scripts directory. This has the start times of all the processes, so you 
can work out how long each took. This will be wall clock time, so take 
that into account.

doug

Leo Souza wrote:
 Hi Carolina,

 Do you know how can I run Freesurfer just to get some Benchmark 
 Numbers and to Check GPU Performance using Cuda?

 Thanks,
 *Leo Souza*

 On 06/13/2011 07:04 AM, Carolina Valencia wrote:
 Thanks a lot, it works.
 just waiting 24 hours.

 Best regards,

 Carolina

 2011/6/10 rspr...@nmr.mgh.harvard.edu 
 mailto:rspr...@nmr.mgh.harvard.edu

 Hi Carolina,

 Sorry My bad. I was inaccurate in my previous message.

 -subject should work.

 Assuming that the MPRAGE of your subject is under the following
 directory:

 /freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig

 set your SUBJECTS_DIR to
 /freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig
 before
 running recon-all

 setenv SUBJECTS_DIR
 ~/freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig

 recon-all -all -i $SUBJECTS_DIR/MPRAGE.nii.gz -subject
 $SUBJECTS_DIR/hptu_subj001

 This should create a folder where Freesurfer recons will be created:

 cd
 
 ~/freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig/hptu_subj001

 Best,
 Priti

  Hi Carolina,
 
  -subject is not recognized by Freesurfer...Use -subjid or -s
 instead.
 
  setenv SUBJECTS_DIR path to tutorial data
 
  recon-all -all -i path to your MPRAGE/MPRAGE.nii.gz -s path to
  freesurfer recons/hptu_subj001
 
  Priti
 
  Hello Freesurfer's users,
 
  I'm starting using FS and I have a problem running recon-all
  I create a folder called hptu_subj001 which contains MPRAGE.nii.gz
  within
  tutorial_subj
  First I convert nii.gz to mgz qith the command:
  recon-all -i MPRAGE.nii.gz -s hptu_subj001
  and then in order to process all, I type:
  recon-all –i 001.mgz –subject hptu_subj001 –all
 
 
 
 cvalencia-Precision-WorkStation-T3400:~/freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig
  recon-all –i 001.mgz –subject hptu_subj001 –all
  ERROR: Flag  i unrecognized.
   i 001.mgz  subject hptu_subj001  all
  Linux cvalencia-Precision-WorkStation-T3400 2.6.35-28-generic-pae
  #50-Ubuntu
  SMP Fri Mar 18 20:43:15 UTC 2011 i686 GNU/Linux
 
  recon-all -s  exited with ERRORS at Fri Jun 10 12:50:04 COT 2011
 
  then I tried with:
 
 
 
 cvalencia-Precision-WorkStation-T3400:~/freesurfer/subjects/buckner_data/tutorial_subj
  recon-all –i MPRAGE.nii.gz –subject hptu_subj001 –all
  ERROR: Flag  i unrecognized.
   i MPRAGE.nii.gz  subject hptu_subj001  all
  Linux cvalencia-Precision-WorkStation-T3400 2.6.35-28-generic-pae
  #50-Ubuntu
  SMP Fri Mar 18 20:43:15 UTC 2011 i686 GNU/Linux
 
  recon-all -s  exited with ERRORS at Fri Jun 10 12:36:24 COT 2011
 
  How I can fix this error?
 
  Thanks a lot,
 
  Best regards,
 
  Carolina
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 mailto:Freesurfer@nmr.mgh.harvard.edu
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 The information in this e-mail is intended only for the person to
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 and the e-mail
 contains patient information, please contact the Partners
 Compliance HelpLine at
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 -- 
 This email message is for the sole use of the intended recipient(s) 
 and may contain confidential information.  Any unauthorized review, 
 use, disclosure or distribution is prohibited.  If you are not the 
 intended recipient, please contact the sender by reply email and 
 destroy all copies of the original message.
 

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-- 
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gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358 
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
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Re: [Freesurfer] recon-all -s exited with ERRORS

[Leo Souza]

Yes, I did that, but it doesn't actually uses the GPU to do that, only CPU.

GPU percentage is 0%.  (you can check it by do running: nvidia-smi -q 
-d UTILIZATION -l 3 if your'e using any recent drivers.



Thanks,
*Leo Souza*

On 06/13/2011 02:44 PM, Douglas N Greve wrote:

When you run recon-all, it will create a recon-all-status file in the
scripts directory. This has the start times of all the processes, so you
can work out how long each took. This will be wall clock time, so take
that into account.

doug

Leo Souza wrote:

Hi Carolina,

Do you know how can I run Freesurfer just to get some Benchmark
Numbers and to Check GPU Performance using Cuda?

Thanks,
*Leo Souza*

On 06/13/2011 07:04 AM, Carolina Valencia wrote:

Thanks a lot, it works.
just waiting 24 hours.

Best regards,

Carolina

2011/6/10rspr...@nmr.mgh.harvard.edu
mailto:rspr...@nmr.mgh.harvard.edu

 Hi Carolina,

 Sorry My bad. I was inaccurate in my previous message.

 -subject should work.

 Assuming that the MPRAGE of your subject is under the following
 directory:

 /freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig

 set your SUBJECTS_DIR to
 /freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig
 before
 running recon-all

 setenv SUBJECTS_DIR
 ~/freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig

 recon-all -all -i $SUBJECTS_DIR/MPRAGE.nii.gz -subject
 $SUBJECTS_DIR/hptu_subj001

 This should create a folder where Freesurfer recons will be created:

 cd
 
~/freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig/hptu_subj001

 Best,
 Priti

   Hi Carolina,
 
   -subject is not recognized by Freesurfer...Use -subjid or -s
 instead.
 
   setenv SUBJECTS_DIRpath to tutorial data
 
   recon-all -all -ipath to your MPRAGE/MPRAGE.nii.gz -spath to
   freesurfer recons/hptu_subj001
 
   Priti
 
   Hello Freesurfer's users,
 
   I'm starting using FS and I have a problem running recon-all
   I create a folder called hptu_subj001 which contains MPRAGE.nii.gz
   within
   tutorial_subj
   First I convert nii.gz to mgz qith the command:
   recon-all -i MPRAGE.nii.gz -s hptu_subj001
   and then in order to process all, I type:
   recon-all –i 001.mgz –subject hptu_subj001 –all
 
 
 
cvalencia-Precision-WorkStation-T3400:~/freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig
   recon-all –i 001.mgz –subject hptu_subj001 –all
   ERROR: Flag  i unrecognized.
i 001.mgz  subject hptu_subj001  all
   Linux cvalencia-Precision-WorkStation-T3400 2.6.35-28-generic-pae
   #50-Ubuntu
   SMP Fri Mar 18 20:43:15 UTC 2011 i686 GNU/Linux
 
   recon-all -s  exited with ERRORS at Fri Jun 10 12:50:04 COT 2011
 
   then I tried with:
 
 
 
cvalencia-Precision-WorkStation-T3400:~/freesurfer/subjects/buckner_data/tutorial_subj
   recon-all –i MPRAGE.nii.gz –subject hptu_subj001 –all
   ERROR: Flag  i unrecognized.
i MPRAGE.nii.gz  subject hptu_subj001  all
   Linux cvalencia-Precision-WorkStation-T3400 2.6.35-28-generic-pae
   #50-Ubuntu
   SMP Fri Mar 18 20:43:15 UTC 2011 i686 GNU/Linux
 
   recon-all -s  exited with ERRORS at Fri Jun 10 12:36:24 COT 2011
 
   How I can fix this error?
 
   Thanks a lot,
 
   Best regards,
 
   Carolina
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 mailto:Freesurfer@nmr.mgh.harvard.edu
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 The information in this e-mail is intended only for the person to
 whom it is
 addressed. If you believe this e-mail was sent to you in error
 and the e-mail
 contains patient information, please contact the Partners
 Compliance HelpLine at
 http://www.partners.org/complianceline . If the e-mail was sent
 to you in error
 but does not contain patient information, please contact the
 sender and properly
 dispose of the e-mail.




--

This email message is for the sole use of the intended recipient(s)
and may contain confidential information.  Any unauthorized review,
use, disclosure or distribution is prohibited.  If you are not the
intended recipient, please contact the sender by reply email and
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Re: [Freesurfer] recon-all -s exited with ERRORS

[Leo Souza]

Sorry my typos, got a weird keyboard here.

Thanks,
*Leo Souza*

On 06/13/2011 03:27 PM, Leo Souza wrote:
Yes, I did that, but it doesn't actually uses the GPU to do that, only 
CPU.


GPU percentage is 0%.  (you can check it by do running: nvidia-smi -q 
-d UTILIZATION -l 3 if youŕe using any recent drivers.



Thanks,
*Leo Souza*

On 06/13/2011 02:44 PM, Douglas N Greve wrote:

When you run recon-all, it will create a recon-all-status file in the
scripts directory. This has the start times of all the processes, so you
can work out how long each took. This will be wall clock time, so take
that into account.

doug

Leo Souza wrote:

Hi Carolina,

Do you know how can I run Freesurfer just to get some Benchmark
Numbers and to Check GPU Performance using Cuda?

Thanks,
*Leo Souza*

On 06/13/2011 07:04 AM, Carolina Valencia wrote:

Thanks a lot, it works.
just waiting 24 hours.

Best regards,

Carolina

2011/6/10rspr...@nmr.mgh.harvard.edu
mailto:rspr...@nmr.mgh.harvard.edu

 Hi Carolina,

 Sorry My bad. I was inaccurate in my previous message.

 -subject should work.

 Assuming that the MPRAGE of your subject is under the following
 directory:

 /freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig

 set your SUBJECTS_DIR to
 /freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig
 before
 running recon-all

 setenv SUBJECTS_DIR
 ~/freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig

 recon-all -all -i $SUBJECTS_DIR/MPRAGE.nii.gz -subject
 $SUBJECTS_DIR/hptu_subj001

 This should create a folder where Freesurfer recons will be created:

 cd
 
~/freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig/hptu_subj001

 Best,
 Priti

   Hi Carolina,
 
   -subject is not recognized by Freesurfer...Use -subjid or -s
 instead.
 
   setenv SUBJECTS_DIRpath to tutorial data
 
   recon-all -all -ipath to your MPRAGE/MPRAGE.nii.gz -spath to
   freesurfer recons/hptu_subj001
 
   Priti
 
   Hello Freesurfer's users,
 
   I'm starting using FS and I have a problem running recon-all
   I create a folder called hptu_subj001 which contains MPRAGE.nii.gz
   within
   tutorial_subj
   First I convert nii.gz to mgz qith the command:
   recon-all -i MPRAGE.nii.gz -s hptu_subj001
   and then in order to process all, I type:
   recon-all –i 001.mgz –subject hptu_subj001 –all
 
 
 
cvalencia-Precision-WorkStation-T3400:~/freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig
   recon-all –i 001.mgz –subject hptu_subj001 –all
   ERROR: Flag  i unrecognized.
i 001.mgz  subject hptu_subj001  all
   Linux cvalencia-Precision-WorkStation-T3400 2.6.35-28-generic-pae
   #50-Ubuntu
   SMP Fri Mar 18 20:43:15 UTC 2011 i686 GNU/Linux
 
   recon-all -s  exited with ERRORS at Fri Jun 10 12:50:04 COT 2011
 
   then I tried with:
 
 
 
cvalencia-Precision-WorkStation-T3400:~/freesurfer/subjects/buckner_data/tutorial_subj
   recon-all –i MPRAGE.nii.gz –subject hptu_subj001 –all
   ERROR: Flag  i unrecognized.
i MPRAGE.nii.gz  subject hptu_subj001  all
   Linux cvalencia-Precision-WorkStation-T3400 2.6.35-28-generic-pae
   #50-Ubuntu
   SMP Fri Mar 18 20:43:15 UTC 2011 i686 GNU/Linux
 
   recon-all -s  exited with ERRORS at Fri Jun 10 12:36:24 COT 2011
 
   How I can fix this error?
 
   Thanks a lot,
 
   Best regards,
 
   Carolina
   ___
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   Freesurfer@nmr.mgh.harvard.edu
 mailto:Freesurfer@nmr.mgh.harvard.edu
   https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
 
   ___
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   Freesurfer@nmr.mgh.harvard.edu
 mailto:Freesurfer@nmr.mgh.harvard.edu
   https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
 
 
 



 The information in this e-mail is intended only for the person to
 whom it is
 addressed. If you believe this e-mail was sent to you in error
 and the e-mail
 contains patient information, please contact the Partners
 Compliance HelpLine at
 http://www.partners.org/complianceline  . If the e-mail was sent
 to you in error
 but does not contain patient information, please contact the
 sender and properly
 dispose of the e-mail.




--

This email message is for the sole use of the intended recipient(s)
and may contain confidential information.  Any unauthorized review,
use, disclosure or distribution is prohibited.  If you are not the
intended recipient, please contact the sender by reply email and
destroy all copies of the original message.

Re: [Freesurfer] recon-all -s exited with ERRORS

[Douglas N Greve]

Try adding -use-cuda to recon-all

Leo Souza wrote:
 Yes, I did that, but it doesn't actually uses the GPU to do that, only 
 CPU.

 GPU percentage is 0%. (you can check it by do running: nvidia-smi -q 
 -d UTILIZATION -l 3 if your'e using any recent drivers.


 Thanks,
 *Leo Souza*

 On 06/13/2011 02:44 PM, Douglas N Greve wrote:
 When you run recon-all, it will create a recon-all-status file in the 
 scripts directory. This has the start times of all the processes, so you 
 can work out how long each took. This will be wall clock time, so take 
 that into account.

 doug

 Leo Souza wrote:
 
 Hi Carolina,

 Do you know how can I run Freesurfer just to get some Benchmark 
 Numbers and to Check GPU Performance using Cuda?

 Thanks,
 *Leo Souza*

 On 06/13/2011 07:04 AM, Carolina Valencia wrote:
   
 Thanks a lot, it works.
 just waiting 24 hours.

 Best regards,

 Carolina

 2011/6/10 rspr...@nmr.mgh.harvard.edu 
 mailto:rspr...@nmr.mgh.harvard.edu

 Hi Carolina,

 Sorry My bad. I was inaccurate in my previous message.

 -subject should work.

 Assuming that the MPRAGE of your subject is under the following
 directory:

 /freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig

 set your SUBJECTS_DIR to
 /freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig
 before
 running recon-all

 setenv SUBJECTS_DIR
 ~/freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig

 recon-all -all -i $SUBJECTS_DIR/MPRAGE.nii.gz -subject
 $SUBJECTS_DIR/hptu_subj001

 This should create a folder where Freesurfer recons will be created:

 cd
 
 ~/freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig/hptu_subj001

 Best,
 Priti

  Hi Carolina,
 
  -subject is not recognized by Freesurfer...Use -subjid or -s
 instead.
 
  setenv SUBJECTS_DIR path to tutorial data
 
  recon-all -all -i path to your MPRAGE/MPRAGE.nii.gz -s path to
  freesurfer recons/hptu_subj001
 
  Priti
 
  Hello Freesurfer's users,
 
  I'm starting using FS and I have a problem running recon-all
  I create a folder called hptu_subj001 which contains MPRAGE.nii.gz
  within
  tutorial_subj
  First I convert nii.gz to mgz qith the command:
  recon-all -i MPRAGE.nii.gz -s hptu_subj001
  and then in order to process all, I type:
  recon-all –i 001.mgz –subject hptu_subj001 –all
 
 
 
 cvalencia-Precision-WorkStation-T3400:~/freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig
  recon-all –i 001.mgz –subject hptu_subj001 –all
  ERROR: Flag  i unrecognized.
   i 001.mgz  subject hptu_subj001  all
  Linux cvalencia-Precision-WorkStation-T3400 2.6.35-28-generic-pae
  #50-Ubuntu
  SMP Fri Mar 18 20:43:15 UTC 2011 i686 GNU/Linux
 
  recon-all -s  exited with ERRORS at Fri Jun 10 12:50:04 COT 2011
 
  then I tried with:
 
 
 
 cvalencia-Precision-WorkStation-T3400:~/freesurfer/subjects/buckner_data/tutorial_subj
  recon-all –i MPRAGE.nii.gz –subject hptu_subj001 –all
  ERROR: Flag  i unrecognized.
   i MPRAGE.nii.gz  subject hptu_subj001  all
  Linux cvalencia-Precision-WorkStation-T3400 2.6.35-28-generic-pae
  #50-Ubuntu
  SMP Fri Mar 18 20:43:15 UTC 2011 i686 GNU/Linux
 
  recon-all -s  exited with ERRORS at Fri Jun 10 12:36:24 COT 2011
 
  How I can fix this error?
 
  Thanks a lot,
 
  Best regards,
 
  Carolina
  ___
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  Freesurfer@nmr.mgh.harvard.edu
 mailto:Freesurfer@nmr.mgh.harvard.edu
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 mailto:Freesurfer@nmr.mgh.harvard.edu
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 The information in this e-mail is intended only for the person to
 whom it is
 addressed. If you believe this e-mail was sent to you in error
 and the e-mail
 contains patient information, please contact the Partners
 Compliance HelpLine at
 http://www.partners.org/complianceline . If the e-mail was sent
 to you in error
 but does not contain patient information, please contact the
 sender and properly
 dispose of the e-mail.




 -- 
 
 This email message is for the sole use of the intended recipient(s) 
 and may contain confidential information.  Any unauthorized review, 
 use, disclosure or distribution is prohibited.  If you are not the 
 intended recipient, please contact the sender by reply email and 
 destroy all copies of the original message.
 

 ___
 

Re: [Freesurfer] recon-all -s exited with ERRORS

[Leo Souza]

-use-cuda is invalid I think, but I did -use-gpu and see what I get:

[root@cuda-final2 bin]# ./recon-all -use-gpu
Testing for CUDA device:
nvcc: NVIDIA (R) Cuda compiler driver
Copyright (c) 2005-2010 NVIDIA Corporation
Built on Thu_Nov__4_12:44:17_PDT_2010
Cuda compilation tools, release 3.2, V0.2.1221

Driver : 4.0
Runtime : 3.20

Acquiring CUDA device
Using default device
CUDA device: Tesla C2050
stable5

NVIDIA driver version info:
NVRM version: NVIDIA UNIX x86_64 Kernel Module  270.41.23  Sun Jun  5 
22:11:38 PDT 2011


ERROR: must specify a subject id
[root@cuda-final2 bin]#


Thanks,
*Leo Souza*

On 06/13/2011 04:10 PM, Douglas N Greve wrote:

Try adding -use-cuda to recon-all

Leo Souza wrote:

Yes, I did that, but it doesn't actually uses the GPU to do that, only
CPU.

GPU percentage is 0%. (you can check it by do running: nvidia-smi -q
-d UTILIZATION -l 3 if your'e using any recent drivers.


Thanks,
*Leo Souza*

On 06/13/2011 02:44 PM, Douglas N Greve wrote:

When you run recon-all, it will create a recon-all-status file in the
scripts directory. This has the start times of all the processes, so you
can work out how long each took. This will be wall clock time, so take
that into account.

doug

Leo Souza wrote:


Hi Carolina,

Do you know how can I run Freesurfer just to get some Benchmark
Numbers and to Check GPU Performance using Cuda?

Thanks,
*Leo Souza*

On 06/13/2011 07:04 AM, Carolina Valencia wrote:


Thanks a lot, it works.
just waiting 24 hours.

Best regards,

Carolina

2011/6/10rspr...@nmr.mgh.harvard.edu
mailto:rspr...@nmr.mgh.harvard.edu

 Hi Carolina,

 Sorry My bad. I was inaccurate in my previous message.

 -subject should work.

 Assuming that the MPRAGE of your subject is under the following
 directory:

 /freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig

 set your SUBJECTS_DIR to
 /freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig
 before
 running recon-all

 setenv SUBJECTS_DIR
 ~/freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig

 recon-all -all -i $SUBJECTS_DIR/MPRAGE.nii.gz -subject
 $SUBJECTS_DIR/hptu_subj001

 This should create a folder where Freesurfer recons will be created:

 cd
 
~/freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig/hptu_subj001

 Best,
 Priti

   Hi Carolina,
 
   -subject is not recognized by Freesurfer...Use -subjid or -s
 instead.
 
   setenv SUBJECTS_DIRpath to tutorial data
 
   recon-all -all -ipath to your MPRAGE/MPRAGE.nii.gz -spath to
   freesurfer recons/hptu_subj001
 
   Priti
 
   Hello Freesurfer's users,
 
   I'm starting using FS and I have a problem running recon-all
   I create a folder called hptu_subj001 which contains MPRAGE.nii.gz
   within
   tutorial_subj
   First I convert nii.gz to mgz qith the command:
   recon-all -i MPRAGE.nii.gz -s hptu_subj001
   and then in order to process all, I type:
   recon-all –i 001.mgz –subject hptu_subj001 –all
 
 
 
cvalencia-Precision-WorkStation-T3400:~/freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig
   recon-all –i 001.mgz –subject hptu_subj001 –all
   ERROR: Flag  i unrecognized.
i 001.mgz  subject hptu_subj001  all
   Linux cvalencia-Precision-WorkStation-T3400 2.6.35-28-generic-pae
   #50-Ubuntu
   SMP Fri Mar 18 20:43:15 UTC 2011 i686 GNU/Linux
 
   recon-all -s  exited with ERRORS at Fri Jun 10 12:50:04 COT 2011
 
   then I tried with:
 
 
 
cvalencia-Precision-WorkStation-T3400:~/freesurfer/subjects/buckner_data/tutorial_subj
   recon-all –i MPRAGE.nii.gz –subject hptu_subj001 –all
   ERROR: Flag  i unrecognized.
i MPRAGE.nii.gz  subject hptu_subj001  all
   Linux cvalencia-Precision-WorkStation-T3400 2.6.35-28-generic-pae
   #50-Ubuntu
   SMP Fri Mar 18 20:43:15 UTC 2011 i686 GNU/Linux
 
   recon-all -s  exited with ERRORS at Fri Jun 10 12:36:24 COT 2011
 
   How I can fix this error?
 
   Thanks a lot,
 
   Best regards,
 
   Carolina
   ___
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 mailto:Freesurfer@nmr.mgh.harvard.edu
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 The information in this e-mail is intended only for the person to
 whom it is
 addressed. If you believe this e-mail was sent to you in error
 and the e-mail
 contains patient information, please contact the Partners
 Compliance HelpLine at
 

Re: [Freesurfer] recon-all -s exited with ERRORS

[Pedro Paulo de Magalhães Oliveira Junior]

recon-all -s bert -all -use-gpu

-- iOS 4.3

Em 13/06/2011, às 21:30, Leo Souza lso...@nvidia.com escreveu:

/recon-all -use-gpu
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The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

[Freesurfer] recon-all -s exited with ERRORS

[Carolina Valencia]

Hello Freesurfer's users,

I'm starting using FS and I have a problem running recon-all
I create a folder called hptu_subj001 which contains MPRAGE.nii.gz within
tutorial_subj
First I convert nii.gz to mgz qith the command:
recon-all -i MPRAGE.nii.gz -s hptu_subj001
and then in order to process all, I type:
recon-all –i 001.mgz –subject hptu_subj001 –all

cvalencia-Precision-WorkStation-T3400:~/freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig
recon-all –i 001.mgz –subject hptu_subj001 –all
ERROR: Flag i unrecognized.
i 001.mgz subject hptu_subj001 all
Linux cvalencia-Precision-WorkStation-T3400 2.6.35-28-generic-pae #50-Ubuntu
SMP Fri Mar 18 20:43:15 UTC 2011 i686 GNU/Linux

recon-all -s  exited with ERRORS at Fri Jun 10 12:50:04 COT 2011

then I tried with:

cvalencia-Precision-WorkStation-T3400:~/freesurfer/subjects/buckner_data/tutorial_subj
recon-all –i MPRAGE.nii.gz –subject hptu_subj001 –all
ERROR: Flag i unrecognized.
i MPRAGE.nii.gz subject hptu_subj001 all
Linux cvalencia-Precision-WorkStation-T3400 2.6.35-28-generic-pae #50-Ubuntu
SMP Fri Mar 18 20:43:15 UTC 2011 i686 GNU/Linux

recon-all -s  exited with ERRORS at Fri Jun 10 12:36:24 COT 2011

How I can fix this error?

Thanks a lot,

Best regards,

Carolina
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Re: [Freesurfer] recon-all -s exited with ERRORS

[rspriti]

Hi Carolina,

Sorry My bad. I was inaccurate in my previous message.

-subject should work.

Assuming that the MPRAGE of your subject is under the following directory:

/freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig

set your SUBJECTS_DIR to
/freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig before
running recon-all

setenv SUBJECTS_DIR
~/freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig

recon-all -all -i $SUBJECTS_DIR/MPRAGE.nii.gz -subject
$SUBJECTS_DIR/hptu_subj001

This should create a folder where Freesurfer recons will be created:

cd
~/freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig/hptu_subj001

Best,
Priti

 Hi Carolina,

 -subject is not recognized by Freesurfer...Use -subjid or -s instead.

 setenv SUBJECTS_DIR path to tutorial data

 recon-all -all -i path to your MPRAGE/MPRAGE.nii.gz -s path to
 freesurfer recons/hptu_subj001

 Priti

 Hello Freesurfer's users,

 I'm starting using FS and I have a problem running recon-all
 I create a folder called hptu_subj001 which contains MPRAGE.nii.gz
 within
 tutorial_subj
 First I convert nii.gz to mgz qith the command:
 recon-all -i MPRAGE.nii.gz -s hptu_subj001
 and then in order to process all, I type:
 recon-all –i 001.mgz –subject hptu_subj001 –all

 cvalencia-Precision-WorkStation-T3400:~/freesurfer/subjects/buckner_data/tutorial_subj/hptu_subj001_orig
 recon-all –i 001.mgz –subject hptu_subj001 –all
 ERROR: Flag i unrecognized.
 i 001.mgz subject hptu_subj001 all
 Linux cvalencia-Precision-WorkStation-T3400 2.6.35-28-generic-pae
 #50-Ubuntu
 SMP Fri Mar 18 20:43:15 UTC 2011 i686 GNU/Linux

 recon-all -s  exited with ERRORS at Fri Jun 10 12:50:04 COT 2011

 then I tried with:

 cvalencia-Precision-WorkStation-T3400:~/freesurfer/subjects/buckner_data/tutorial_subj
 recon-all –i MPRAGE.nii.gz –subject hptu_subj001 –all
 ERROR: Flag i unrecognized.
 i MPRAGE.nii.gz subject hptu_subj001 all
 Linux cvalencia-Precision-WorkStation-T3400 2.6.35-28-generic-pae
 #50-Ubuntu
 SMP Fri Mar 18 20:43:15 UTC 2011 i686 GNU/Linux

 recon-all -s  exited with ERRORS at Fri Jun 10 12:36:24 COT 2011

 How I can fix this error?

 Thanks a lot,

 Best regards,

 Carolina
 ___
 Freesurfer mailing list
 Freesurfer@nmr.mgh.harvard.edu
 https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

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 Freesurfer mailing list
 Freesurfer@nmr.mgh.harvard.edu
 https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer




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Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.