Re: [Freesurfer] recon-all error: mpr2mni305 failed

[Douglas N. Greve]

I'm not sure what is happening or why the tal reg is apparently failing. 
My guess is that it is something non-standard about the image. The first 
thing to try is to run it at 1mm (without the -hires). At some point, 
you may have to send us the volume (or at least some pictures in axial, 
sag, and cor)


On 1/24/2022 2:58 AM, Hickling, Alice wrote:


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Hi FreeSurfer Developers,


I’m trying to run recon-all on a high resolution (0.65mm iso) MP2RAGE 
however I am receiving the following error.


talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm

talairach_avi log file is transforms/talairach_avi.log...

ERROR: mpr2mni305 failed, see transforms/talairach_avi.log

These are the options that I am using.

recon-all -all -s Freesurfer -i denoised_MP2RAGE.nii -T2 
mean_denoised_MP2RAGE_T2W.nii -T2pial -multistrip -hires


Please let me know if you can help.

  * FreeSurfer version: 7.2.0
(freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b)
  * Platform: CentOS Linux release 7.9.2009 (Core), Rocks release 7.0
(Manzanita)
  * Uname -a: Linux compute-0-14.local 3.10.0-957.27.2.el7.x86_64 #1
SMP Mon Jul 29 17:46:05 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
  * Recon-all.log: see attached
  * Talairach_avi.log: see attached

Best wishes,

Alice


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Re: [Freesurfer] recon all error mpr2mni305

[Hoopes, Andrew]

Hi Richard, it seems this was caused by a minor update to our mac build 
machine. These libraries should be correctly linked now in the most recent dev 
build (updated a few minutes ago). Let me know if you still have issues

best,
Andrew

On 4/19/18, 2:39 PM, "freesurfer-boun...@nmr.mgh.harvard.edu on behalf of 
Jones, Richard"  wrote:

How does the input image look, ie, orig.mg>

The images the look the same as the input DICOM images, no scaling or other 
problems. 


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Re: [Freesurfer] recon all error mpr2mni305

[Jones, Richard]

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Message: 1
Date: Thu, 19 Apr 2018 12:05:03 -0400
From: "Douglas N. Greve" 
Subject: Re: [Freesurfer] Freesurfer dev version : recon all error
mpr2mni305
To: 
Message-ID: <0b445a3f-8fde-d23e-dab6-442a773c9...@mgh.harvard.edu>
Content-Type: text/plain; charset="windows-1252"; format=flowed

How does the input image look, ie, orig.mg>

The images the look the same as the input DICOM images, no scaling or other 
problems. 


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