Re: [Freesurfer] ubuntu: run freesurfer in two terminal
External Email - Use Caution For 2 subjects that is what you can do. If you have a lot more, I would suggest to have a look at GNU Parallel [1]. It's also available in the Ubuntu package system. Best, Tim [1] https://www.gnu.org/software/parallel/ > On March 5, 2020 at 1:54 AM Bruce Fischl wrote: > > > sure, as long as you have more than one core. You can run them in the same > terminal as long as you put & at the end of the line > > On Thu, 5 Mar 2020, ZhangBo wrote: > > > > > External Email - Use Caution > > > > Hello FreeSurfer Developers, > > > > My computer doesn't support cuda. To speed up data processing, could I open > > two terminal, and in each of them, I first runing: > > > > $> export FREESURFER_HOME=/usr/local/freesurfer > > $> export FREESURFER_HOME=/SetUpFreeSurfer.sh > > $> export SUBJECTS_DIR=/usr/local/freesurfer/subjects/ > > > > then running: > > recon-all -s sub-01 -i sub-01_T1w.nii.gz -all (for terminal 1) > > recon-all -s sub-02 -i sub-02_T1w.nii.gz -all (for terminal 2) > > > > Thanks. > > > > > > > > > > > > > > > > > > > > > > > >___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Dr. Tim Schäfer Postdoc Computational Neuroimaging Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] ubuntu: run freesurfer in two terminal
sure, as long as you have more than one core. You can run them in the same terminal as long as you put & at the end of the line On Thu, 5 Mar 2020, ZhangBo wrote: External Email - Use Caution Hello FreeSurfer Developers, My computer doesn't support cuda. To speed up data processing, could I open two terminal, and in each of them, I first runing: $> export FREESURFER_HOME=/usr/local/freesurfer $> export FREESURFER_HOME=/SetUpFreeSurfer.sh $> export SUBJECTS_DIR=/usr/local/freesurfer/subjects/ then running: recon-all -s sub-01 -i sub-01_T1w.nii.gz -all (for terminal 1) recon-all -s sub-02 -i sub-02_T1w.nii.gz -all (for terminal 2) Thanks. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
[Freesurfer] ubuntu: run freesurfer in two terminal
External Email - Use Caution Hello FreeSurfer Developers, My computer doesn't support cuda. To speed up data processing, could I open two terminal, and in each of them, I first runing: $> export FREESURFER_HOME=/usr/local/freesurfer $> export FREESURFER_HOME=/SetUpFreeSurfer.sh $> export SUBJECTS_DIR=/usr/local/freesurfer/subjects/ then running: recon-all -s sub-01 -i sub-01_T1w.nii.gz -all (for terminal 1) recon-all -s sub-02 -i sub-02_T1w.nii.gz -all (for terminal 2) Thanks. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
