Re: [Freesurfer] Tksurfer: Unable to view .orig file
Hi Bruce, I found out what was wrong. If any of you had the same problem, it could be due to this. Vertices for freesurfer are in millimeters, and I had them in meters. Thanks for your help and good luck with the course. Arvind On 22 Jul 2005, Bruce Fischl wrote: Hi Arvind, it's the middle of the FSL/FreeSurfer course, so we're all really busy. Hopefully we'll get to it next week. Bruce On Thu, 21 Jul 2005, Arvind Gururajan wrote: Hi, Could anyone please tell me what could be wrong? What more information do I need to provide? Your help will be really appreciated. Arvind Gururajan On 20 Jul 2005, Arvind Gururajan wrote: Hi Bruce, I had a single file with both hemisphere data points. Was able to make a crude separation into two hemisphere. Probably couldn't have messed up here, I used a different software to visualize them, and it was fairly clean separation. I used the following command to convert from .asc to .orig. mris_convert /share_data/server/arvind/freesurfer/subjects/ZM/surf/lh.curv.asc /share_data/server/arvind/freesurfer/subjects/ZM/surf/lh.orig .xdebug_tksurfer for the subject is empty, here it is anyways. Thanks for your help. Arvind On 14 Jul 2005, Bruce Fischl wrote: Hi Arvind, you need to give us more info, and the .xdebug_tksurfer files. Bruce On Thu, 14 Jul 2005, Arvind Gururajan wrote: Hi, I have trouble viewing .orig files in Tksurfer. I used mris_convert to generate .orig files from .ascii( with number of vertices and triangles for each hemisphere). Any quick thoughts on what could be wrong ? No error messages. Help would be appreciated. Arvind Gururajan ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] Tksurfer: Unable to view .orig file
Hi Arvind, it's the middle of the FSL/FreeSurfer course, so we're all really busy. Hopefully we'll get to it next week. Bruce On Thu, 21 Jul 2005, Arvind Gururajan wrote: Hi, Could anyone please tell me what could be wrong? What more information do I need to provide? Your help will be really appreciated. Arvind Gururajan On 20 Jul 2005, Arvind Gururajan wrote: Hi Bruce, I had a single file with both hemisphere data points. Was able to make a crude separation into two hemisphere. Probably couldn't have messed up here, I used a different software to visualize them, and it was fairly clean separation. I used the following command to convert from .asc to .orig. mris_convert /share_data/server/arvind/freesurfer/subjects/ZM/surf/lh.curv.asc /share_data/server/arvind/freesurfer/subjects/ZM/surf/lh.orig .xdebug_tksurfer for the subject is empty, here it is anyways. Thanks for your help. Arvind On 14 Jul 2005, Bruce Fischl wrote: Hi Arvind, you need to give us more info, and the .xdebug_tksurfer files. Bruce On Thu, 14 Jul 2005, Arvind Gururajan wrote: Hi, I have trouble viewing .orig files in Tksurfer. I used mris_convert to generate .orig files from .ascii( with number of vertices and triangles for each hemisphere). Any quick thoughts on what could be wrong ? No error messages. Help would be appreciated. Arvind Gururajan ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] Tksurfer: Unable to view .orig file
Hi, Could anyone please tell me what could be wrong? What more information do I need to provide? Your help will be really appreciated. Arvind Gururajan On 20 Jul 2005, Arvind Gururajan wrote: Hi Bruce, I had a single file with both hemisphere data points. Was able to make a crude separation into two hemisphere. Probably couldn't have messed up here, I used a different software to visualize them, and it was fairly clean separation. I used the following command to convert from .asc to .orig. mris_convert /share_data/server/arvind/freesurfer/subjects/ZM/surf/lh.curv.asc /share_data/server/arvind/freesurfer/subjects/ZM/surf/lh.orig .xdebug_tksurfer for the subject is empty, here it is anyways. Thanks for your help. Arvind On 14 Jul 2005, Bruce Fischl wrote: Hi Arvind, you need to give us more info, and the .xdebug_tksurfer files. Bruce On Thu, 14 Jul 2005, Arvind Gururajan wrote: Hi, I have trouble viewing .orig files in Tksurfer. I used mris_convert to generate .orig files from .ascii( with number of vertices and triangles for each hemisphere). Any quick thoughts on what could be wrong ? No error messages. Help would be appreciated. Arvind Gururajan ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] Tksurfer: Unable to view .orig file
Hi Bruce, I had a single file with both hemisphere data points. Was able to make a crude separation into two hemisphere. Probably couldn't have messed up here, I used a different software to visualize them, and it was fairly clean separation. I used the following command to convert from .asc to .orig. mris_convert /share_data/server/arvind/freesurfer/subjects/ZM/surf/lh.curv.asc /share_data/server/arvind/freesurfer/subjects/ZM/surf/lh.orig .xdebug_tksurfer for the subject is empty, here it is anyways. Thanks for your help. Arvind On 14 Jul 2005, Bruce Fischl wrote: Hi Arvind, you need to give us more info, and the .xdebug_tksurfer files. Bruce On Thu, 14 Jul 2005, Arvind Gururajan wrote: Hi, I have trouble viewing .orig files in Tksurfer. I used mris_convert to generate .orig files from .ascii( with number of vertices and triangles for each hemisphere). Any quick thoughts on what could be wrong ? No error messages. Help would be appreciated. Arvind Gururajan ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer .xdebug_tksurfer Description: Binary data ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
