Re: [Freesurfer] isxconcat-sess question..
Hi Krishna, if you have a proper freesurfer analysis and registration to the anatomical, it should work fine. doug Krishna Srihasam wrote: Hi, Is there a way to use” isxconcat-sess” to average monkey fMRI data? i.e. I have two groups of monkeys (say, test and control groups) and I want to do group analysis on their data.. Regards, krishna ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] isxconcat-sess question
Hi Doug, I just tried to type in the command you sent me in the dev environment and got this error: ERROR: Flag -talxfm unrecognized. -a MR-sm6-stc -m mask -o MR-group-allsubjects-sm6-stc/MR-sm6-stc/tal.masks.mgz -interp nearest -fsd bold -talres 2 -talxfm fsl-ta1.xfm -sf sessid_noproblem_all_subjects even though I see this when I type isxconcat-sess -help Volume-based options: -talres res : 1 or 2 mm (def is 2) -talxfm xfmfile : use xfmfile instead of talairach.xfm Thanks, Bill On Tue, 11 Mar 2008, Doug Greve wrote: I've just added something to do this. Add -talxfm fsl-tal.xfm to the cmd line. Live on next dev update. doug Bill Monaco wrote: Hi, I wanted to know if it's possible to run isxconcat-sess but have it use a different talairach transform when it calls mri_vol2vol. Currently the default is mri/transforms/talairach.xfm, but I want it to use one I had outputted from a previous processing step - mri/transforms/fsl-ta1.xfm Is there an easy way to do this? Thanks, Bill -- Bill Monaco Research Assistant MGH East - CNY 149 149 13th Street - 2271 Charlestown, MA 02129 617-726-9128 ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] isxconcat-sess question
I've just added something to do this. Add -talxfm fsl-tal.xfm to the cmd line. Live on next dev update. doug Bill Monaco wrote: Hi, I wanted to know if it's possible to run isxconcat-sess but have it use a different talairach transform when it calls mri_vol2vol. Currently the default is mri/transforms/talairach.xfm, but I want it to use one I had outputted from a previous processing step - mri/transforms/fsl-ta1.xfm Is there an easy way to do this? Thanks, Bill -- Douglas N. Greve, Ph.D. MGH-NMR Center [EMAIL PROTECTED] Phone Number: 617-724-2358 Fax: 617-726-7422 In order to help us help you, please follow the steps in: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
