[Freesurfer] tksurkfer save error
Hi, This is a repost as I didn’t get a reply to the one I sent a few weeks ago. This error basically means I can’t automatically generate a webpage of all of the segmentation results. I getting an error when trying to save a tiff file using tksurfer on a linux machine via NoMachine v5.0.47. I’m running the ENIGMA QA pipeline which has a call similar to: tkfsurfer bert lh inflated. Then, trying to save the tiff either from the GUI or using their script doesn’t work and causes the error: pixel read error/resource temporarily unavailable. Is there a way to get this to work or is this a feature of using a virtual desktop? Thanks, Jen ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
[Freesurfer] tksurkfer save error
Ok, thanks for the reply. It sounds like the ENIGMA folks need to updage their commands to use freeview. I'll try using ImageMajick's import as a workaround. Jen Message: 11 Date: Thu, 12 Apr 2018 10:59:58 -0400 From: "Douglas N. Greve" <dgr...@mgh.harvard.edu> Subject: Re: [Freesurfer] tksurkfer save error To: <freesurfer@nmr.mgh.harvard.edu>, Ruopeng Wang <rpw...@nmr.mgh.harvard.edu> Message-ID: <834b362c-841b-5e86-cd3e-74b34ec33...@mgh.harvard.edu> Content-Type: text/plain; charset="utf-8"; format=flowed We are not really supporting tksurfer anymore. You can use freeview to save a png from the GUI. Ruopeng, is there a way to take a snap shot from the command line? On 04/12/2018 10:29 AM, Evans, Jennifer (NIH/NIMH) [F] wrote: Hi, This is a repost as I didn?t get a reply to the one I sent a few weeks ago.? This error basically means I can?t automatically generate a webpage of all of the segmentation results.? I getting an error when trying to save a tiff file using tksurfer on a linux machine via NoMachine v5.0.47.? I?m running the ENIGMA QA pipeline which has a call similar to: ?tkfsurfer bert lh inflated.? Then, trying to save the tiff either from the GUI or using their script doesn?t work and causes the error: pixel read error/resource temporarily unavailable. ??Is there a way to get this to work or is this a feature of using a virtual desktop? Thanks, Jen ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
[Freesurfer] Error saving a tiff file using tksurfer with NoMachine
Hi, I’m getting an error when trying to save a tiff file using tksurfer using NoMachine v5.0.47. I’m running the ENIGMA QA pipeline which has a call similar to: tkfsurfer bert lh inflated. Then, trying to save the tiff either from the GUI or using their script doesn’t work and causes the error: pixel read error/resource temporarily unavailable. Is there a way to get this to work? Thanks, Jen ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
