Hi, I've installed galaxy locally on my Mac, I've got everything running fine except Bowtie/Tophat/etc. indexes.
I tried following the steps here: https://bitbucket.org/galaxy/galaxy-central/wiki/NGSLocalSetup So my bowtie_indices.loc file looks like this: "e_coli /Users/jel65/galaxy-central/tool-data/e_coli" (no quotes) (I was just testing the e_coli index that came with bowtie) So I saved it, restarted the galaxy server, but still nothing shows up in the drop down. Did I miss a step? I've read the documentation multiple times. Thanks Jeremy
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