FYI: it is my understanding that such tools cannot be used in a workflow at
this time.
On Feb 19, 2014 10:08 AM, "Carlos Borroto" <carlos.borr...@gmail.com> wrote:

> On Wednesday, February 19, 2014, Peter Cock <p.j.a.c...@googlemail.com>
> wrote:
>
>> On Wed, Feb 19, 2014 at 2:16 PM, John Chilton <jmchil...@bx.psu.edu>
>> wrote:
>> > Hey Peter,
>> >
>> > Have you seen this solution?
>> >
>> >
>> https://wiki.galaxyproject.org/Admin/Tools/Multiple%20Output%20Files#Number_of_Output_datasets_cannot_be_determined_until_tool_run
>> >
>> > It always seems to get mentioned when this topic is brought up. It has
>> > serious limitations in terms or workflow running, but it can probably
>> > be made to work for individual tool executions.
>>
>> Hmm. Any real life examples of this in use? I guess looking for
>> the magic string $__new_file_path__ in the <command> tag
>> is the only way to identify this?
>>
>>
> Hi Peter,
>
> I used the current functionality here:
> http://toolshed.g2.bx.psu.edu/view/cjav/split_by_barcode
>
> The code for the underlining tool is available here:
> https://github.com/cjav/ngs-tools
>
> Hope it helps,
> Carlos
>
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