Louise-Amélie Schmitt wrote:
Hi,
I ran into a little something that is a bit annoying for debug when
trying to upload files through the API with
library_upload_from_import_dir.py. When the specified folder is
wrong, python tries to process the error tuple like a dict, so the
original error is hard to find.
I modified a little the code to avoid that. It might not work in all
cases but at least it solved my problem.
Here is the original code:
lib/galaxy/web/api/contents.py l.145-end
else:
rval = []
for k, v in output.items():
if type( v ) ==
trans.app.model.LibraryDatasetDatasetAssociation:
v = v.library_dataset
encoded_id = trans.security.encode_id( create_type +
'.' + str( v.id ) )
rval.append( dict( id = encoded_id,
name = v.name,
url = url_for( 'content',
library_id=library_id, id=encoded_id ) ) )
return rval
Here is how I modified it:
else:
rval = []
try:
for k, v in output.items():
if type( v ) ==
trans.app.model.LibraryDatasetDatasetAssociation:
v = v.library_dataset
encoded_id = trans.security.encode_id(
create_type + '.' + str( v.id ) )
rval.append( dict( id = encoded_id,
name = v.name,
url = url_for( 'content',
library_id=library_id, id=encoded_id ) ) )
return rval
except:
log.debug( 'HTTP Error %s: %s' % ( output[0], output[1] ) )
return None
Since it saves me some time energy I just wanted to share it, so I
hope it can help.
Best
L-A
Hi L-A,
Thanks for finding this. It's been fixed in 5952:832538ba7258.
--nate
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