Re: [galaxy-dev] Bug with workflow
Hi, Thanks for your answer. I've no failed job in my history. I've checked the workflow and it is the same as before update. But your answer highlight another point ! The tool I use in my final step has been modified after update of galaxy and not tested alone. When I've tested this tool alone, I've seen this error in the middle panel "output" not found (it was a variable name which have been changed after update !!!). It's the first time that I have such error with no entry in history preventing a check of stderr and stdout, so I didn't think that it can be come from my tool. Thanks for your help. Julie 2014-07-07 2:22 GMT+02:00 John Chilton : > There is likely a failed job somewhere in your history? Can you look > at that for details - standard out, standard error, etc...? > > Can you open the workflow in the workflow editor and see if it still > looks the same as before the update? > > Also, can you export the workflow and send it to me? > > Thanks, > -John > > On Thu, Jul 3, 2014 at 2:20 AM, julie dubois wrote: >> Hi all, >> I've a bug with the use of workflow. I've created my own workflow and >> since the latest update the workflow can be launched correctly but not >> completely!!! >> >> The first steps works with outputs on history, a job runs in >> job_working_directory for each of these steps. But for my final step : >> no job begin in job_working_directory so no data in history because >> the jobs don't exist. >> >> In my workflow the outputs are selected to be not hidden and the final >> step is connected with other steps. >> >> Any other one have this problem ? >> >> Thanks. >> >> Julie >> ___ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> http://lists.bx.psu.edu/ >> >> To search Galaxy mailing lists use the unified search at: >> http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Bug with workflow
There is likely a failed job somewhere in your history? Can you look at that for details - standard out, standard error, etc...? Can you open the workflow in the workflow editor and see if it still looks the same as before the update? Also, can you export the workflow and send it to me? Thanks, -John On Thu, Jul 3, 2014 at 2:20 AM, julie dubois wrote: > Hi all, > I've a bug with the use of workflow. I've created my own workflow and > since the latest update the workflow can be launched correctly but not > completely!!! > > The first steps works with outputs on history, a job runs in > job_working_directory for each of these steps. But for my final step : > no job begin in job_working_directory so no data in history because > the jobs don't exist. > > In my workflow the outputs are selected to be not hidden and the final > step is connected with other steps. > > Any other one have this problem ? > > Thanks. > > Julie > ___ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
[galaxy-dev] Bug with workflow
Hi all, I've a bug with the use of workflow. I've created my own workflow and since the latest update the workflow can be launched correctly but not completely!!! The first steps works with outputs on history, a job runs in job_working_directory for each of these steps. But for my final step : no job begin in job_working_directory so no data in history because the jobs don't exist. In my workflow the outputs are selected to be not hidden and the final step is connected with other steps. Any other one have this problem ? Thanks. Julie ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
