Hello,
In a Galaxy tool, I would like to display a pre-completed path in the
xml inputbox, inside the tool.xml file.
Consequently, I would like to add a variable in an <param value="" />
tag , like this :
<tool id="test" name="test" version="">
<command interpreter="sh">test.sh $in $out</command>
<inputs>
<param name="filepath" type="text" size="100" value="/work/$out" />
</inputs>
...
and in test.sh : $out is defined to be ${trans.user.username}
Do you have any idea to display ${trans.user.username} variable in
order to be shown in galaxy interface (gui) thanks to xml file ?
I achieve to display ${trans.user.username} in
/templates/root/tool_menu.mako but not in the xml file.
Thanks in advance,
Sarah
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