[galaxy-dev] ToolShed tool preview broken (TestToolShed too)

2014-10-08 Thread Peter Cock
Hi all,

From the new tools information Dave Compiled for the last Galaxy Update
https://wiki.galaxyproject.org/GalaxyUpdates/2014_10#ToolShed_Contributions
I had a look at galaxyp's filter_by_fasta_ids: Extract sequences from a
FASTA file based on a list of IDs tool:

https://toolshed.g2.bx.psu.edu/view/galaxyp/filter_by_fasta_ids

I wanted to see how it compared to my own similar tools (which handle
FASTA, FASTQ, SFF and could  cover more - they replaced my older
single format filter tools):

https://toolshed.g2.bx.psu.edu/view/peterjc/seq_filter_by_id
https://toolshed.g2.bx.psu.edu/view/peterjc/seq_select_by_id

Now for the bug report, clicking on the button (under valid tools) which
would normally give a preview of the tool form is failing - giving just
Internal Server Error.

I have tried a random selection of other tools and this seems to be
universal - moreover the TestToolShed also seems to have
the same problem.

Regards,

Peter
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Re: [galaxy-dev] ToolShed tool preview broken (TestToolShed too)

2014-10-08 Thread Peter Cock
On Wed, Oct 8, 2014 at 9:22 AM, Peter Cock p.j.a.c...@googlemail.com wrote:
 Hi all,

 From the new tools information Dave Compiled for the last Galaxy Update
 https://wiki.galaxyproject.org/GalaxyUpdates/2014_10#ToolShed_Contributions
 I had a look at galaxyp's filter_by_fasta_ids: Extract sequences from a
 FASTA file based on a list of IDs tool:

 https://toolshed.g2.bx.psu.edu/view/galaxyp/filter_by_fasta_ids

 I wanted to see how it compared to my own similar tools (which handle
 FASTA, FASTQ, SFF and could  cover more - they replaced my older
 single format filter tools):

 https://toolshed.g2.bx.psu.edu/view/peterjc/seq_filter_by_id
 https://toolshed.g2.bx.psu.edu/view/peterjc/seq_select_by_id

 Now for the bug report, clicking on the button (under valid tools) which
 would normally give a preview of the tool form is failing - giving just
 Internal Server Error.

 I have tried a random selection of other tools and this seems to be
 universal - moreover the TestToolShed also seems to have
 the same problem.

 Regards,

 Peter

This is working again now.

See also another possibly related Internal Server Error on
upload which is also working again now:
http://lists.bx.psu.edu/pipermail/galaxy-dev/2014-October/020619.html

Peter
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