[galaxy-dev] filter tag in output, multiple criteria
Hi,
I'm looking for the correct syntax to achieve the following:
data type=data format=txt name=loh label=${tool.name} result on
${on_string} (loh)
filterouttype == 0 || outttype == 2 /filter
/data
data type=data format=txt name=cnv label=${tool.name} result on
${on_string} (loh)
filterouttype == 1 || outttype == 2 /filter
/data
I tried the above, with and without parentheses, but it creates the
second dataset also when outtype == 0. Is this type of dual filtering
possible?
Best,
Geert
--
Geert Vandeweyer, Ph.D.
Department of Medical Genetics
University of Antwerp
Prins Boudewijnlaan 43
2650 Edegem
Belgium
Tel: +32 (0)3 275 97 56
E-mail: geert.vandewe...@ua.ac.be
http://ua.ac.be/cognitivegenetics
http://www.linkedin.com/in/geertvandeweyer
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Re: [galaxy-dev] filter tag in output, multiple criteria
On Fri, Jan 31, 2014 at 10:52 AM, Geert Vandeweyer
geert.vandewey...@uantwerpen.be wrote:
Hi,
I'm looking for the correct syntax to achieve the following:
data type=data format=txt name=loh label=${tool.name} result on
${on_string} (loh)
filterouttype == 0 || outttype == 2 /filter
/data
data type=data format=txt name=cnv label=${tool.name} result on
${on_string} (loh)
filterouttype == 1 || outttype == 2 /filter
/data
I tried the above, with and without parentheses, but it creates the second
dataset also when outtype == 0. Is this type of dual filtering possible?
Rather than the logical or, have you tried outtype != 1, and outtype
!= 0 instead?
(I am assuming there are only three values for outtype, 0, 1 and 2.)
Peter
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Re: [galaxy-dev] filter tag in output, multiple criteria
Il 2014-01-31 11:52 Geert Vandeweyer ha scritto:
Hi,
I'm looking for the correct syntax to achieve the following:
data type=data format=txt name=loh label=${tool.name} result
on ${on_string} (loh)
filterouttype == 0 || outttype == 2 /filter
/data
data type=data format=txt name=cnv label=${tool.name} result
on ${on_string} (loh)
filterouttype == 1 || outttype == 2 /filter
/data
I tried the above, with and without parentheses, but it creates the
second dataset also when outtype == 0. Is this type of dual filtering
possible?
I don't know if this is the reason, but you seem to have a typo:
outttype == 2
should be
outtype == 2
Best,
Nicola
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Re: [galaxy-dev] filter tag in output, multiple criteria
Hi,
Thanks for the quick suggestions.
The typo didn't exists in the original code, so that didn't solve it
unfortunately. I fixed it for now by using the negative filter (!=),
suggested by Peter.
Best,
Geert
On 01/31/2014 12:09 PM, Nicola Soranzo wrote:
Il 2014-01-31 11:52 Geert Vandeweyer ha scritto:
Hi,
I'm looking for the correct syntax to achieve the following:
data type=data format=txt name=loh label=${tool.name} result
on ${on_string} (loh)
filterouttype == 0 || outttype == 2 /filter
/data
data type=data format=txt name=cnv label=${tool.name} result
on ${on_string} (loh)
filterouttype == 1 || outttype == 2 /filter
/data
I tried the above, with and without parentheses, but it creates the
second dataset also when outtype == 0. Is this type of dual filtering
possible?
I don't know if this is the reason, but you seem to have a typo:
outttype == 2
should be
outtype == 2
Best,
Nicola
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--
Geert Vandeweyer, Ph.D.
Department of Medical Genetics
University of Antwerp
Prins Boudewijnlaan 43
2650 Edegem
Belgium
Tel: +32 (0)3 275 97 56
E-mail: geert.vandewe...@ua.ac.be
http://ua.ac.be/cognitivegenetics
http://www.linkedin.com/in/geertvandeweyer
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and other Galaxy lists, please use the interface at:
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Re: [galaxy-dev] filter tag in output, multiple criteria
Hi,
something like that is also possible:
((
params['settingsType'] == custom and
params['unmapped_read_file'] is True
))
So I assume:
outtype == 0 or outtype == 2
will also work.
Cheers,
Bjoern
2014-01-31 Geert Vandeweyer geert.vandewey...@uantwerpen.be:
Hi,
Thanks for the quick suggestions.
The typo didn't exists in the original code, so that didn't solve it
unfortunately. I fixed it for now by using the negative filter (!=),
suggested by Peter.
Best,
Geert
On 01/31/2014 12:09 PM, Nicola Soranzo wrote:
Il 2014-01-31 11:52 Geert Vandeweyer ha scritto:
Hi,
I'm looking for the correct syntax to achieve the following:
data type=data format=txt name=loh label=${tool.name} result
on ${on_string} (loh)
filterouttype == 0 || outttype == 2 /filter
/data
data type=data format=txt name=cnv label=${tool.name} result
on ${on_string} (loh)
filterouttype == 1 || outttype == 2 /filter
/data
I tried the above, with and without parentheses, but it creates the
second dataset also when outtype == 0. Is this type of dual filtering
possible?
I don't know if this is the reason, but you seem to have a typo:
outttype == 2
should be
outtype == 2
Best,
Nicola
___
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in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
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--
Geert Vandeweyer, Ph.D.
Department of Medical Genetics
University of Antwerp
Prins Boudewijnlaan 43
2650 Edegem
Belgium
Tel: +32 (0)3 275 97 56
E-mail: geert.vandewe...@ua.ac.be
http://ua.ac.be/cognitivegenetics
http://www.linkedin.com/in/geertvandeweyer
___
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in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
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http://galaxyproject.org/search/mailinglists/
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and other Galaxy lists, please use the interface at:
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