[galaxy-dev] ldap module not present
I'm trying out the new LDAP auth features in v15.05. I'm getting the following error in my logs: galaxy.auth.providers.ldap_ad DEBUG 2015-05-15 08:53:43,886 LDAP authenticate: could not load ldap module this is from 'import ldap' failing in lib/galaxy/auth/providers/ldap_ad.py Should there be some egg magic that takes care of this dependency for me? thanks, -Will -- The information contained in this e-mail message or any attachment(s) may be confidential and/or privileged and is intended for use only by the individual(s) to whom this message is addressed. If you are not the intended recipient, any dissemination, distribution, copying, or use is strictly prohibited. If you receive this e-mail message in error, please e-mail the sender at who...@lygos.com and destroy this message and remove the transmission from all computer directories (including e-mail servers). Please consider the environment before printing this email. ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] missing auth_conf.xml.sample
Hi Tony, Sorry for the trouble, the file was missing due to changes in the config/* directory being excluded by .hgignore. The missing file (and one other) has been pushed to Bitbucket, so you should be able to `hg pull -u` to get a fixed version. --nate On Fri, May 15, 2015 at 2:35 PM, Dannon Baker dannon.ba...@gmail.com wrote: Thanks for catching this, we'll be updating the bitbucket release shortly to correctly include the new .sample. On Fri, May 15, 2015 at 2:05 PM Will Holtz who...@lygos.com wrote: Here is the file: https://raw.githubusercontent.com/galaxyproject/galaxy/dev/config/auth_conf.xml.sample -Will On Fri, May 15, 2015 at 10:59 AM, Tony Kusalik kusa...@cs.usask.ca wrote: Hi This morning I did a hg pull -u This took me from changeset: 17103 to changeset: 17121:7a4e3a661a76 However, when trying to restart the galaxy server, I get IOError: [Errno 2] No such file or directory: './config/auth_conf.xml.sample' Checking the config subdirectory, I can confirm that this .xml.sample file is not present. Where can I get a copy of config/auth_conf.xml.sample? (I'd rather just grab this file rather than doing something as drastic as a re-install.) Why did the update not pull down a copy of config/auth_conf.xml.sample? Did I do something wrong? Thanks. ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ -- The information contained in this e-mail message or any attachment(s) may be confidential and/or privileged and is intended for use only by the individual(s) to whom this message is addressed. If you are not the intended recipient, any dissemination, distribution, copying, or use is strictly prohibited. If you receive this e-mail message in error, please e-mail the sender at who...@lygos.com and destroy this message and remove the transmission from all computer directories (including e-mail servers). Please consider the environment before printing this email. ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
[galaxy-dev] missing auth_conf.xml.sample
Hi This morning I did a hg pull -u This took me from changeset: 17103 to changeset: 17121:7a4e3a661a76 However, when trying to restart the galaxy server, I get IOError: [Errno 2] No such file or directory: './config/auth_conf.xml.sample' Checking the config subdirectory, I can confirm that this .xml.sample file is not present. Where can I get a copy of config/auth_conf.xml.sample? (I'd rather just grab this file rather than doing something as drastic as a re-install.) Why did the update not pull down a copy of config/auth_conf.xml.sample? Did I do something wrong? Thanks. ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] missing auth_conf.xml.sample
Thanks for catching this, we'll be updating the bitbucket release shortly to correctly include the new .sample. On Fri, May 15, 2015 at 2:05 PM Will Holtz who...@lygos.com wrote: Here is the file: https://raw.githubusercontent.com/galaxyproject/galaxy/dev/config/auth_conf.xml.sample -Will On Fri, May 15, 2015 at 10:59 AM, Tony Kusalik kusa...@cs.usask.ca wrote: Hi This morning I did a hg pull -u This took me from changeset: 17103 to changeset: 17121:7a4e3a661a76 However, when trying to restart the galaxy server, I get IOError: [Errno 2] No such file or directory: './config/auth_conf.xml.sample' Checking the config subdirectory, I can confirm that this .xml.sample file is not present. Where can I get a copy of config/auth_conf.xml.sample? (I'd rather just grab this file rather than doing something as drastic as a re-install.) Why did the update not pull down a copy of config/auth_conf.xml.sample? Did I do something wrong? Thanks. ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ -- The information contained in this e-mail message or any attachment(s) may be confidential and/or privileged and is intended for use only by the individual(s) to whom this message is addressed. If you are not the intended recipient, any dissemination, distribution, copying, or use is strictly prohibited. If you receive this e-mail message in error, please e-mail the sender at who...@lygos.com and destroy this message and remove the transmission from all computer directories (including e-mail servers). Please consider the environment before printing this email. ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
