Re: [galaxy-dev] PLINK 1.90 wrapper

2016-05-30 Thread Bjoern Gruening 

Hi Jochen,

you can contact the owner using the TS interface. Under preferences you 
should have such an option.


I have cc'ed Øyvind as you was also interested in working on this.

Cheers,
Bjoern

On 30.05.2016 10:51, Jochen Bick wrote:

Hi all,

>
> I just found the plink tool in two version 1.9 and 1.7. It looks
> like that it has no wrapper yet? Is it possible that the owner gives
> a feedback about this? We are are very interested in that tool.
>
> Cheers Jochen
> ___ Please
> keep all replies on the list by using "reply all" in your mail
> client.  To manage your subscriptions to this and other Galaxy lists,
> please use the interface at: https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
> http://galaxyproject.org/search/mailinglists/


___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

[galaxy-dev] Error in Deleting datasets

2016-05-30 Thread nazeer 
Hello,

We are using galaxy 15.10 in our production machine. I had to delete
several intermediate datasets from many histories in order to save some
space. The command I used is as follows,

'''
#EVERYTHING WORKED FINE BEFORE I DID THE FOLLOWING
#SHOULDN'T HAVE DONE IT!
'''
requests.put(gi._make_url(gi.histories, module_id=module_id,
contents=True) + "/" + dataset_id, data=json.dumps({"deleted": True,
"purged" : True}), params=gi.default_params)

Once I used this, the galaxy interface showed an error message (attached
with this email)

I did a temporary fix by placing empty files of those datasets which were
deleted (eg: touch dataset_1.dat)

But, after using the python command, any dataset which are deleted
permanently(from galaxy interface or commandline) resulted in this same
error.

I even tried THE microsoft solution("restarting"). Didn't help.

I apologize for my long email. Kindly let me know if anyone faced this
issue. Any info would be of great help!

Thank you all in advance,
Aarif


___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

[galaxy-dev] PLINK 1.90 wrapper

2016-05-30 Thread Jochen Bick 
Hi all,

I just found the plink tool in two version 1.9 and 1.7. It looks like
that it has no wrapper yet? Is it possible that the owner gives a
feedback about this? We are are very interested in that tool.

Cheers Jochen
___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/