[galaxy-dev] All Jobs Error Out

[Yip, Miu ki]

Hi all,

This afternoon, our local instance of Galaxy suddenly started producing errors 
for all jobs. This is the trace that gets printed out. Not sure what is 
happening because the error doesn’t give much information other than python not 
being able to find a module.

Traceback (most recent call last):
  File 
"/localdata1/galaxy/database/jobs_directory/002/2931/set_metadata_LMpe2m.py", 
line 1, in 
from galaxy_ext.metadata.set_metadata import set_metadata; set_metadata()
  File "/localdata1/galaxy/lib/galaxy_ext/metadata/set_metadata.py", line 25, 
in 
import galaxy.model.mapping  # need to load this before we unpickle, in 
order to setup properties assigned by the mappers
  File "/localdata1/galaxy/lib/galaxy/model/mapping.py", line 19, in 
from galaxy.model.custom_types import JSONType, MetadataType, 
TrimmedString, UUIDType
  File "/localdata1/galaxy/lib/galaxy/model/custom_types.py", line 13, in 
from galaxy import app
  File "/localdata1/galaxy/lib/galaxy/app.py", line 17, in 
from galaxy.visualization.plugins.registry import VisualizationsRegistry
  File "/localdata1/galaxy/lib/galaxy/visualization/plugins/registry.py", line 
15, in 
from galaxy.visualization.plugins import plugin as vis_plugins
  File "/localdata1/galaxy/lib/galaxy/visualization/plugins/plugin.py", line 
13, in 
from galaxy.web.base import interactive_environments
  File "/localdata1/galaxy/lib/galaxy/web/base/interactive_environments.py", 
line 14, in 
from galaxy.tools.deps.docker_util import DockerVolume
  File "/localdata1/galaxy/lib/galaxy/tools/__init__.py", line 60, in 
import tool_shed.util.repository_util as repository_util
  File "/localdata1/galaxy/lib/tool_shed/util/repository_util.py", line 16, in 
from tool_shed.util import hg_util
  File "/localdata1/galaxy/lib/tool_shed/util/hg_util.py", line 11, in 
from mercurial.exchange import readbundle
  File "/lib64/python2.7/site-packages/mercurial/exchange.py", line 18, in 
from . import (
  File "/lib64/python2.7/site-packages/mercurial/bundle2.py", line 168, in 
urlerr = util.urlerr
AttributeError: 'module' object has no attribute 'urlerr'

Could anyone provide any insight on the issue? Thanks!
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[galaxy-dev] March 2017 News of the Galaxy

[Dave Clements]

Hello all,

The  March 2017 Galaxy News
 is out!

   - 2017 Galaxy Community Conference
   

early
   registration and abstract submission are open.
   - Travel fellowships for GCC2017
   

are
   available from the Galaxy Community Fund.
   - Metaproteomics of microbiomes at ABRF 2017
   

   , Cycle "Bioinformatique par la pratique" 2017
   

at
   INRA in Jouy-en-Josas, and a whole lot more
   
events
   are coming up.
   - Galaxy is in GSoC 2017
   

   - 199 new publications
   ,
   including 11 highlighted pubs.
   - Four open positions
    in
   Europe and North America.
   - Two new public servers, RNA-Rocket needs some fuel, and Cancer
   Computer upgrades
   

   - New releases
    of
   Galaxy, Planemo, Pulsar, galaxy-lib, Starforge, and (the new)
   sequence_utils.
   - Over 80 new repos
   

in
   the Galaxy Tool Shed.
   - And other news
    too.

Happy March!

Dave C and the Galaxy Team

-- 
http://galaxyproject.org/
http://getgalaxy.org/
http://usegalaxy.org/
https://wiki.galaxyproject.org/
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