Re: [galaxy-dev] iRODS

2016-03-09 Thread Dan Bedard 
The iRODS dev team is certainly interested in how people are using and want to 
use iRODS with Galaxy. Mikael, we would be happy to host the PDF and/or a guest 
blog post about making it work. And we can provide some assistance if there are 
difficulties on the iRODS side of this.

Cheers,
Dan Bedard

— 
Dan Bedard
Executive Director
iRODS Consortium

mobile: 1-919-346-3262
email: d...@renci.org
twitter: @DataDanB

iRODS User Group Meeting 2016
June 7-9 -- Chapel Hill, NC -- https://irods.org/ugm2016


> Message: 2
> Date: Wed, 9 Mar 2016 01:24:24 +
> From: "Kandalaft, Iyad" <iyad.kandal...@agr.gc.ca>
> To: James Taylor <ja...@bx.psu.edu>, Mohamed Kassam
>   <k.mam...@gmail.com>
> Cc: "galaxy-dev@lists.galaxyproject.org"
>   <galaxy-dev@lists.galaxyproject.org>
> Subject: Re: [galaxy-dev] iRODS
> Message-ID:
>   <ca1994d763c7444cb37efc823d43c3824933f...@onottaxes1.agr.gc.ca>
> Content-Type: text/plain; charset="us-ascii"
> 
> We were considering implementing data pull/push tools for Galaxy-iRODS 
> integration but we haven't started work on that.
> I recall that the Galaxy team looked at backing Galaxy with iRODS but moved 
> away from the idea.  There was a trello card with that information.
> 
> 
> Iyad Kandalaft
> Bioinformatics Systems Developer
> Microbial Biodiversity Bioinformatics
> Science & Technology Branch
> Agriculture & Agri-Food Canada
> iyad.kandal...@agr.gc.ca | (613) 759-1228
> 
> 
> From: galaxy-dev [galaxy-dev-boun...@lists.galaxyproject.org] on behalf of 
> James Taylor [ja...@bx.psu.edu]
> Sent: March 8, 2016 10:09 AM
> To: Mohamed Kassam
> Cc: galaxy-dev@lists.galaxyproject.org
> Subject: Re: [galaxy-dev] iRODS
> 
> Mohamed,
> 
> We implemented but never deployed the iRODS object store, so I suspect
> it has not been tested much. If anyone out there is using it please
> let us know.
> 
> On Mon, Mar 7, 2016 at 10:30 AM, Mohamed Kassam <k.mam...@gmail.com> wrote:
>> Dear all,
>> I would like to use our interlan iRODs to pull data.
>> I searched and i find that there is an object store for that.
>> How it works ? DO  I need to configure something else ?
>> 
>> Thanks in advance,
>> 
>> 
>> Mohamed
>> 
>> ___
>> Please keep all replies on the list by using "reply all"
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>>  https://lists.galaxyproject.org/
>> 
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>>  http://galaxyproject.org/search/mailinglists/
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> 
> --
> 
> Message: 3
> Date: Wed, 9 Mar 2016 12:01:38 +0100
> From: Mikael Loaec <mikael.lo...@versailles.inra.fr>
> To: galaxy-dev@lists.galaxyproject.org
> Cc: Olivier Inizan <olivier.ini...@versailles.inra.fr>
> Subject: [galaxy-dev] iRODS
> Message-ID: <56e00292.5070...@versailles.inra.fr>
> Content-Type: text/plain; charset=utf-8
> 
> Hi,
> 
> @URGI, we have sucessfully tested connexion of galaxy instance with an
> iRODS.
> We have a pdf doc 67ko) explaining how we implement it if you want, but
> don't  know if i can send attachement on this mailinglist ?
> 
> We (URGI) are also very interresting in data pull/push tools for
> Galaxy-iRODS integration. Let us know when you will begin working on it.
> 
> Regards,
> 
> Mikael LOAEC
> Systems and Networks Administrator
> URGI INRA
> 
> 
> --
> 
> Message: 4
> Date: Wed, 9 Mar 2016 12:43:36 +0100
> From: Mohamed Kassam <k.mam...@gmail.com>
> To: Mikael Loaec <mikael.lo...@versailles.inra.fr>
> Cc: galaxy-dev@lists.galaxyproject.org, Olivier Inizan
>   <olivier.ini...@versailles.inra.fr>
> Subject: Re: [galaxy-dev] iRODS
> Message-ID:
>

Re: [galaxy-dev] iRODS

2016-03-09 Thread Will Holtz 
Please consider posting the content of your doc to the Galaxy Community Log
Board , so that other people
can find it.

-Will

On Wed, Mar 9, 2016 at 3:01 AM, Mikael Loaec <
mikael.lo...@versailles.inra.fr> wrote:

> Hi,
>
> @URGI, we have sucessfully tested connexion of galaxy instance with an
> iRODS.
> We have a pdf doc 67ko) explaining how we implement it if you want, but
> don't  know if i can send attachement on this mailinglist ?
>
> We (URGI) are also very interresting in data pull/push tools for
> Galaxy-iRODS integration. Let us know when you will begin working on it.
>
> Regards,
>
> Mikael LOAEC
> Systems and Networks Administrator
> URGI INRA
> ___
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/




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Re: [galaxy-dev] iRODS

2016-03-09 Thread Mohamed Kassam 
Thank you for your message,

I sent to you Mikael an email if you can semd your pdf.

It is a good idea to see if in The galaxy dev team they can integrate iRODS
for the next release.

Best regards,

Mohamed

2016-03-09 12:01 GMT+01:00 Mikael Loaec :

> Hi,
>
> @URGI, we have sucessfully tested connexion of galaxy instance with an
> iRODS.
> We have a pdf doc 67ko) explaining how we implement it if you want, but
> don't  know if i can send attachement on this mailinglist ?
>
> We (URGI) are also very interresting in data pull/push tools for
> Galaxy-iRODS integration. Let us know when you will begin working on it.
>
> Regards,
>
> Mikael LOAEC
> Systems and Networks Administrator
> URGI INRA
> ___
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/
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[galaxy-dev] iRODS

2016-03-09 Thread Mikael Loaec 
Hi,

@URGI, we have sucessfully tested connexion of galaxy instance with an
iRODS.
We have a pdf doc 67ko) explaining how we implement it if you want, but
don't  know if i can send attachement on this mailinglist ?

We (URGI) are also very interresting in data pull/push tools for
Galaxy-iRODS integration. Let us know when you will begin working on it.

Regards,

Mikael LOAEC
Systems and Networks Administrator
URGI INRA
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in your mail client.  To manage your subscriptions to this
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Re: [galaxy-dev] iRODS

2016-03-08 Thread Kandalaft, Iyad 
We were considering implementing data pull/push tools for Galaxy-iRODS 
integration but we haven't started work on that.
I recall that the Galaxy team looked at backing Galaxy with iRODS but moved 
away from the idea.  There was a trello card with that information.


Iyad Kandalaft
Bioinformatics Systems Developer
Microbial Biodiversity Bioinformatics
Science & Technology Branch
Agriculture & Agri-Food Canada
iyad.kandal...@agr.gc.ca | (613) 759-1228


From: galaxy-dev [galaxy-dev-boun...@lists.galaxyproject.org] on behalf of 
James Taylor [ja...@bx.psu.edu]
Sent: March 8, 2016 10:09 AM
To: Mohamed Kassam
Cc: galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] iRODS

Mohamed,

We implemented but never deployed the iRODS object store, so I suspect
it has not been tested much. If anyone out there is using it please
let us know.

On Mon, Mar 7, 2016 at 10:30 AM, Mohamed Kassam <k.mam...@gmail.com> wrote:
> Dear all,
> I would like to use our interlan iRODs to pull data.
> I searched and i find that there is an object store for that.
> How it works ? DO  I need to configure something else ?
>
> Thanks in advance,
>
>
> Mohamed
>
> ___
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/
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[galaxy-dev] iRODS

2016-03-07 Thread Mohamed Kassam 
Dear all,
I would like to use our interlan iRODs to pull data.
I searched and i find that there is an object store for that.
How it works ? DO  I need to configure something else ?

Thanks in advance,


Mohamed
___
Please keep all replies on the list by using "reply all"
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[galaxy-dev] iRODS

2016-03-07 Thread Mohamed Kassam 
Dear all,
I would like to use our interlan iRODs to pull data.
I searched and i find that there is an object store for that.
How it works ? DO  I need to configure something else ?

Thanks in advance,


Mohamed
___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
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