Hi John,
thanks for your answer. The nginx config can be found at
https://gist.github.com/jenzopr/623c3541419ce33f662c
What I did was the following:
1) Stopping both servers, nginx and galaxy
2) Removing all log files and the tmp files in upload_store
3) Restarting the servers
4) Starting a fresh browser session, deleting all cookies.
5) Navigating to my galaxy via the browser (172.16.12.122/galaxy, not
172.16.12.122:8080)
6) Login and upload a file test.txt
The file appears in the upload_store, but this time I got a 403 although I was
logged in properly.
Best,
Jens
-Original Message-
From: John Chilton [mailto:jmchil...@gmail.com]
Sent: Mittwoch, 2. März 2016 21:30
To: Preussner, Jens
Cc: galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] nginx data upload request never reaches /api/tools
Can you share your nginx config? Perhaps with a gist or something.
-John
On Mon, Feb 29, 2016 at 12:35 PM, Preussner, Jens
<jens.preuss...@mpi-bn.mpg.de> wrote:
> Hi all,
>
>
>
> I set up the data upload using nginx as described in the wiki
> (https://wiki.galaxyproject.org/Admin/Config/nginxProxy, using the
> subdirectory /galaxy).
>
> The uploaded file also appears inside the uploade_store folder on the
> galaxy server, but galaxy does not add the file.
>
> Investigating the log files, I found the corresponding lines in the
> nginx.error.log:
>
>
>
> # Post request is received
>
> 2016/02/29 12:55:37 [notice] 13156#0: *4 "^(GET|HEAD|POST)$" matches
> "POST",
> client: 172.16.17.17, server: , request: "POST /_upload HTTP/1.1", host:
> "172.16.12.122", referrer: http://172.16.12.122/galaxy/
>
> # Upload starts
>
> 2016/02/29 12:55:37 [info] 13156#0: *4 started uploading file
> "boxes.txt" to "/mnt/idrive1/database/tmp/upload_store/0020132707"
> (field "files_0|file_data", content type "text/plain"), client:
> 172.16.17.17,
> server: , request: "POST /_upload HTTP/1.1", host: "172.16.12.122",
> referrer: http://172.16.12.122/galaxy/
>
> # Upload done, the file is present in the given path
>
> 2016/02/29 12:55:37 [info] 13156#0: *4 finished uploading file "boxes.txt"
> to "/mnt/idrive1/database/tmp/upload_store/0020132707", client:
> 172.16.17.17, server: , request: "POST /_upload HTTP/1.1", host:
> "172.16.12.122", referrer: "http://172.16.12.122/galaxy/;
>
> # Redirection starts?
>
> 2016/02/29 12:55:37 [notice] 13156#0: *4 "^(GET|HEAD|POST)$" matches
> "POST",
> client: 172.16.17.17, server: , request: "POST /_upload HTTP/1.1", host:
> "172.16.12.122", referrer: "http://172.16.12.122/galaxy/;
>
> 2016/02/29 12:55:37 [notice] 13156#0: *4 "nginx_redir=([^&]+)" does
> not match "", client: 172.16.17.17, server: , request: "POST /_upload
> HTTP/1.1",
> host: "172.16.12.122", referrer: "http://172.16.12.122/galaxy/;
>
> 2016/02/29 12:55:37 [notice] 13156#0: *4 "" matches "/_upload_done", client:
> 172.16.17.17, server: , request: "POST /_upload HTTP/1.1", host:
> "172.16.12.122", referrer: "http://172.16.12.122/galaxy/;
>
> # Redirection should be done here
>
> 2016/02/29 12:55:37 [notice] 13156#0: *4 rewritten data:
> "/galaxy/api/tools", args: "", client: 172.16.17.17, server: , request:
> "POST /_upload HTTP/1.1", host: "172.16.12.122", referrer:
> "http://172.16.12.122/galaxy/;
>
> # ModSecurity seems to block the redirect?
>
> 2016/02/29 12:55:37 [info] 13156#0: *4 ModSecurity: invalid "Content-Length"
> header, client: 172.16.17.17, server: , request: "POST /_upload
> HTTP/1.1",
> host: "172.16.12.122", referrer: "http://172.16.12.122/galaxy/;
>
> 2016/02/29 12:55:37 [notice] 13156#0: *4 "^(GET|HEAD|POST)$" matches
> "GET",
> client: 172.16.17.17, server: , request: "POST /_upload HTTP/1.1", host:
> "172.16.12.122", referrer: "http://172.16.12.122/galaxy/;
>
>
>
> A ModSecurityEnabled off; within the /_upload and /_upload_done of the
> nginx config did not help.
>
> Any idea why the Content-Length header causes problems and is blocked
> by modSec? Any workaround for ModSec to accept everything that goes
> from internal to internal?
>
>
>
> Thanks for your help!
>
>
>
> Best,
>
> Jens
>
>
>
>
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