subject:"\[galaxy\-dev\] problems with 'action type=\"metadata\" name=\"dbkey\"' in tool xml"

Re: [galaxy-dev] problems with 'action type="metadata" name="dbkey"' in tool xml

2016-08-17 Thread Hans-Rudolf Hotz


Hi John and Nicola

Thank you very much for working on this and presenting a solution so fast!

Hans-Rudolf

PS: https://github.com/galaxyproject/galaxy/pull/2800


On 08/16/2016 04:40 PM, John Chilton wrote:

Yup - thanks for the bug report. I have used your rna example to build
a minimal-ish example to fit into Galaxy's test tools framework here
https://github.com/galaxyproject/galaxy/pull/2795. I also tested in
16.01 and it worked - so this clearly broke in 16.04. I'll see if I
can track it down and we can move the discussion to the github PR.
Thanks a bunch for the detailed report Hans!

-John

On Tue, Aug 16, 2016 at 9:02 AM, Hans-Rudolf Hotz  wrote:

Hi Nicola and others on the list

It looks like it has something to do with the 'conditional'

I took the rnaStar xml file, and reduced it to the bare bones, just to
reproduce the issue (see attachment: rg_rnaStar.simple ). This works. It
picks up the right dbkey.

I made the xml file even simpler and removed the  'conditional' (see
attachment: rg_rnaStar.simple_noCond  ). And now it no longer works (see
attached screenshot)

And just for completeness: There is nothing in the logs


However, if I use the same two xml files on our current galaxy servers
(running 15.10). It works in both cases. Each time, the right dbkey is
picked up.


  Hans-Rudolf




On 08/16/2016 01:47 PM, Hans-Rudolf Hotz wrote:


Hi Nicola

Many thanks for your comments/suggestions. I've just tested the rnaStar
wrapper, and it works as well.

I will try to dig deeper

Hans-Rudolf




On 08/16/2016 01:38 PM, Nicola Soranzo wrote:


I've tested bowtie_wrapper on Galaxy release_16.04: 
works fine for me.

Cheers,
Nicola

On 16/08/16 11:42, Nicola Soranzo wrote:


Forget about my previous comment, I should have read your email
better, sorry!

Your code similar to bowtie_wrapper is also used by

https://github.com/galaxyproject/tools-iuc/blob/master/tools/rgrnastar/rg_rnaStar.xml

and I think it should work, not sure if it's a regression in Galaxy.

Cheers,
Nicola

On 16/08/16 11:29, Nicola Soranzo wrote:


Hi Hans,
see my comment below.

On 16/08/16 09:51, Hans-Rudolf Hotz wrote:


Dear All


I am trying to move our Galaxy installation to new hardware and at
the same time to a new version (the original is "15.10",minor
version "2" via mercurial; the new is "16.04" via github):

So far, I am making good progress, but I am struggling with a tool
which was written by someone else who has left more than 2 years
ago. The problem is: it doesn't set the dbkey correctly.

I get:




The tool xml is as follows:





   


...



   
  
 



It seems you are missing a param_attribute="dbkey" here, it should be:


Cheers,
Nicola



   





The user can select a genome (based on the Bioconductor BSgenome
packages) from the tab delimited fmi__quasr_genomes table, which
looks like:

hg19BSghg19BSgBSgenome Hsapiens (UCSC hg19)
BSgenome.Hsapiens.UCSC.hg19
hg18BSghg18BSgBSgenome Hsapiens (UCSC hg18)
BSgenome.Hsapiens.UCSC.hg18
ce10BSgce10BSgBSgenome Celegans (UCSC ce10)
BSgenome.Celegans.UCSC.ce10
ce6BSgce6BSgBSgenome Celegans (UCSC ce6)
BSgenome.Celegans.UCSC.ce6
...


The tool works:
  - it displays the available genomes (BSgenome Hsapiens (UCSC hg19),
hg18BSg hg18BSg BSgenome Hsapiens (UCSC hg18), etc)
  - once the job is submitted, it uses the right Bioconductor package
(BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg18, etc)

However, instead of the dbkey (hg19BSg, hg18BSg, etc) I get:




Has anything changed with the 'action' tag since release 15.10?
which makes this simple xml no longer working?

I have to admit, it does look different than the example on the wiki

(https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax#A.3Cactions.3E_tag_set

). I tried the code from the wiki which is based on the
bowtie_wrapper

(https://github.com/galaxyproject/tools-devteam/blob/master/tools/bowtie_wrappers/bowtie_wrapper.xml)

as well:


   
   
   
  
  
   
 
   


but it results in the same kind of error:



Thank you very much for any help/comments

Regards, Hans-Rudolf









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Re: [galaxy-dev] problems with 'action type="metadata" name="dbkey"' in tool xml

2016-08-16 Thread John Chilton

Yup - thanks for the bug report. I have used your rna example to build
a minimal-ish example to fit into Galaxy's test tools framework here
https://github.com/galaxyproject/galaxy/pull/2795. I also tested in
16.01 and it worked - so this clearly broke in 16.04. I'll see if I
can track it down and we can move the discussion to the github PR.
Thanks a bunch for the detailed report Hans!

-John

On Tue, Aug 16, 2016 at 9:02 AM, Hans-Rudolf Hotz  wrote:
> Hi Nicola and others on the list
>
> It looks like it has something to do with the 'conditional'
>
> I took the rnaStar xml file, and reduced it to the bare bones, just to
> reproduce the issue (see attachment: rg_rnaStar.simple ). This works. It
> picks up the right dbkey.
>
> I made the xml file even simpler and removed the  'conditional' (see
> attachment: rg_rnaStar.simple_noCond  ). And now it no longer works (see
> attached screenshot)
>
> And just for completeness: There is nothing in the logs
>
>
> However, if I use the same two xml files on our current galaxy servers
> (running 15.10). It works in both cases. Each time, the right dbkey is
> picked up.
>
>
>  Hans-Rudolf
>
>
>
>
> On 08/16/2016 01:47 PM, Hans-Rudolf Hotz wrote:
>>
>> Hi Nicola
>>
>> Many thanks for your comments/suggestions. I've just tested the rnaStar
>> wrapper, and it works as well.
>>
>> I will try to dig deeper
>>
>> Hans-Rudolf
>>
>>
>>
>>
>> On 08/16/2016 01:38 PM, Nicola Soranzo wrote:
>>>
>>> I've tested bowtie_wrapper on Galaxy release_16.04: >> type="from_data_table" name="bowtie_indexes" column="1" offset="0">
>>> works fine for me.
>>>
>>> Cheers,
>>> Nicola
>>>
>>> On 16/08/16 11:42, Nicola Soranzo wrote:

 Forget about my previous comment, I should have read your email
 better, sorry!

 Your code similar to bowtie_wrapper is also used by

 https://github.com/galaxyproject/tools-iuc/blob/master/tools/rgrnastar/rg_rnaStar.xml

 and I think it should work, not sure if it's a regression in Galaxy.

 Cheers,
 Nicola

 On 16/08/16 11:29, Nicola Soranzo wrote:
>
> Hi Hans,
> see my comment below.
>
> On 16/08/16 09:51, Hans-Rudolf Hotz wrote:
>>
>> Dear All
>>
>>
>> I am trying to move our Galaxy installation to new hardware and at
>> the same time to a new version (the original is "15.10",minor
>> version "2" via mercurial; the new is "16.04" via github):
>>
>> So far, I am making good progress, but I am struggling with a tool
>> which was written by someone else who has left more than 2 years
>> ago. The problem is: it doesn't set the dbkey correctly.
>>
>> I get:
>> 
>>
>>
>>
>> The tool xml is as follows:
>>
>> 
>>> format="qsamples,qsamplespaired" label="Sample File" help="set of
>> sequence files created by the 'select sequence files' tool">
>>
>>> help="all reads will be mapped to this reference">
>>   
>>
>>
>> ...
>> 
>> 
>>> label="qProject of ${sample_file.name}">
>>   
>>  
>> 
>
>
> It seems you are missing a param_attribute="dbkey" here, it should be:
> 
>
> Cheers,
> Nicola
>
>> 
>>   
>>
>> 
>>
>>
>>
>> The user can select a genome (based on the Bioconductor BSgenome
>> packages) from the tab delimited fmi__quasr_genomes table, which
>> looks like:
>>
>> hg19BSghg19BSgBSgenome Hsapiens (UCSC hg19)
>> BSgenome.Hsapiens.UCSC.hg19
>> hg18BSghg18BSgBSgenome Hsapiens (UCSC hg18)
>> BSgenome.Hsapiens.UCSC.hg18
>> ce10BSgce10BSgBSgenome Celegans (UCSC ce10)
>> BSgenome.Celegans.UCSC.ce10
>> ce6BSgce6BSgBSgenome Celegans (UCSC ce6)
>> BSgenome.Celegans.UCSC.ce6
>> ...
>>
>>
>> The tool works:
>>  - it displays the available genomes (BSgenome Hsapiens (UCSC hg19),
>> hg18BSg hg18BSg BSgenome Hsapiens (UCSC hg18), etc)
>>  - once the job is submitted, it uses the right Bioconductor package
>> (BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg18, etc)
>>
>> However, instead of the dbkey (hg19BSg, hg18BSg, etc) I get:
>> 
>>
>>
>>
>> Has anything changed with the 'action' tag since release 15.10?
>> which makes this simple xml no longer working?
>>
>> I have to admit, it does look different than the example on the wiki
>>
>> (https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax#A.3Cactions.3E_tag_set
>>
>> ). I tried the code from the wiki which is based on the
>> bowtie_wrapper
>>
>> (https://github.com/galaxyproject/tools-devteam/blob/master/tools/bowtie_wrappers/bowtie_wrapper.xml)
>>
>> as well:
>>
>>
>>   
>>   
>>   > column="1" offset="0">
>>  >

Re: [galaxy-dev] problems with 'action type="metadata" name="dbkey"' in tool xml

2016-08-16 Thread Hans-Rudolf Hotz


Hi Nicola

Many thanks for your comments/suggestions. I've just tested the rnaStar 
wrapper, and it works as well.


I will try to dig deeper

Hans-Rudolf




On 08/16/2016 01:38 PM, Nicola Soranzo wrote:

I've tested bowtie_wrapper on Galaxy release_16.04: 
works fine for me.

Cheers,
Nicola

On 16/08/16 11:42, Nicola Soranzo wrote:

Forget about my previous comment, I should have read your email
better, sorry!

Your code similar to bowtie_wrapper is also used by
https://github.com/galaxyproject/tools-iuc/blob/master/tools/rgrnastar/rg_rnaStar.xml
and I think it should work, not sure if it's a regression in Galaxy.

Cheers,
Nicola

On 16/08/16 11:29, Nicola Soranzo wrote:

Hi Hans,
see my comment below.

On 16/08/16 09:51, Hans-Rudolf Hotz wrote:

Dear All


I am trying to move our Galaxy installation to new hardware and at
the same time to a new version (the original is "15.10",minor
version "2" via mercurial; the new is "16.04" via github):

So far, I am making good progress, but I am struggling with a tool
which was written by someone else who has left more than 2 years
ago. The problem is: it doesn't set the dbkey correctly.

I get:




The tool xml is as follows:


   
   
   
  
   

...


   
  
 



It seems you are missing a param_attribute="dbkey" here, it should be:


Cheers,
Nicola



  
   




The user can select a genome (based on the Bioconductor BSgenome
packages) from the tab delimited fmi__quasr_genomes table, which
looks like:

hg19BSghg19BSgBSgenome Hsapiens (UCSC hg19)
BSgenome.Hsapiens.UCSC.hg19
hg18BSghg18BSgBSgenome Hsapiens (UCSC hg18)
BSgenome.Hsapiens.UCSC.hg18
ce10BSgce10BSgBSgenome Celegans (UCSC ce10)
BSgenome.Celegans.UCSC.ce10
ce6BSgce6BSgBSgenome Celegans (UCSC ce6)
BSgenome.Celegans.UCSC.ce6
...


The tool works:
 - it displays the available genomes (BSgenome Hsapiens (UCSC hg19),
hg18BSg hg18BSg BSgenome Hsapiens (UCSC hg18), etc)
 - once the job is submitted, it uses the right Bioconductor package
(BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg18, etc)

However, instead of the dbkey (hg19BSg, hg18BSg, etc) I get:




Has anything changed with the 'action' tag since release 15.10?
which makes this simple xml no longer working?

I have to admit, it does look different than the example on the wiki
(https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax#A.3Cactions.3E_tag_set
). I tried the code from the wiki which is based on the
bowtie_wrapper
(https://github.com/galaxyproject/tools-devteam/blob/master/tools/bowtie_wrappers/bowtie_wrapper.xml)
as well:


  
  
  
 
 
  

  


but it results in the same kind of error:



Thank you very much for any help/comments

Regards, Hans-Rudolf









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Re: [galaxy-dev] problems with 'action type="metadata" name="dbkey"' in tool xml

2016-08-16 Thread Nicola Soranzo

I've tested bowtie_wrapper on Galaxy release_16.04: type="from_data_table" name="bowtie_indexes" column="1" offset="0"> 
works fine for me.


Cheers,
Nicola

On 16/08/16 11:42, Nicola Soranzo wrote:
Forget about my previous comment, I should have read your email 
better, sorry!


Your code similar to bowtie_wrapper is also used by 
https://github.com/galaxyproject/tools-iuc/blob/master/tools/rgrnastar/rg_rnaStar.xml 
and I think it should work, not sure if it's a regression in Galaxy.


Cheers,
Nicola

On 16/08/16 11:29, Nicola Soranzo wrote:

Hi Hans,
see my comment below.

On 16/08/16 09:51, Hans-Rudolf Hotz wrote:

Dear All


I am trying to move our Galaxy installation to new hardware and at 
the same time to a new version (the original is "15.10",minor 
version "2" via mercurial; the new is "16.04" via github):


So far, I am making good progress, but I am struggling with a tool 
which was written by someone else who has left more than 2 years 
ago. The problem is: it doesn't set the dbkey correctly.


I get:




The tool xml is as follows:


   format="qsamples,qsamplespaired" label="Sample File" help="set of 
sequence files created by the 'select sequence files' tool">

   
   help="all reads will be mapped to this reference">

  
   

...


   label="qProject of ${sample_file.name}">

  
 



It seems you are missing a param_attribute="dbkey" here, it should be:


Cheers,
Nicola



  
   




The user can select a genome (based on the Bioconductor BSgenome 
packages) from the tab delimited fmi__quasr_genomes table, which 
looks like:


hg19BSghg19BSgBSgenome Hsapiens (UCSC hg19) 
BSgenome.Hsapiens.UCSC.hg19
hg18BSghg18BSgBSgenome Hsapiens (UCSC hg18) 
BSgenome.Hsapiens.UCSC.hg18
ce10BSgce10BSgBSgenome Celegans (UCSC ce10) 
BSgenome.Celegans.UCSC.ce10
ce6BSgce6BSgBSgenome Celegans (UCSC ce6) 
BSgenome.Celegans.UCSC.ce6

...


The tool works:
 - it displays the available genomes (BSgenome Hsapiens (UCSC hg19), 
hg18BSg hg18BSg BSgenome Hsapiens (UCSC hg18), etc)
 - once the job is submitted, it uses the right Bioconductor package 
(BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg18, etc)


However, instead of the dbkey (hg19BSg, hg18BSg, etc) I get:




Has anything changed with the 'action' tag since release 15.10? 
which makes this simple xml no longer working?


I have to admit, it does look different than the example on the wiki 
(https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax#A.3Cactions.3E_tag_set 
). I tried the code from the wiki which is based on the 
bowtie_wrapper 
(https://github.com/galaxyproject/tools-devteam/blob/master/tools/bowtie_wrappers/bowtie_wrapper.xml) 
as well:



  
  
  column="1" offset="0">
 compare="startswith" keep="False"/>

 
  

  


but it results in the same kind of error:



Thank you very much for any help/comments

Regards, Hans-Rudolf









___
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Re: [galaxy-dev] problems with 'action type="metadata" name="dbkey"' in tool xml

2016-08-16 Thread Nicola Soranzo

Forget about my previous comment, I should have read your email better, 
sorry!


Your code similar to bowtie_wrapper is also used by 
https://github.com/galaxyproject/tools-iuc/blob/master/tools/rgrnastar/rg_rnaStar.xml 
and I think it should work, not sure if it's a regression in Galaxy.


Cheers,
Nicola

On 16/08/16 11:29, Nicola Soranzo wrote:

Hi Hans,
see my comment below.

On 16/08/16 09:51, Hans-Rudolf Hotz wrote:

Dear All


I am trying to move our Galaxy installation to new hardware and at 
the same time to a new version (the original is "15.10",minor version 
"2" via mercurial; the new is "16.04" via github):


So far, I am making good progress, but I am struggling with a tool 
which was written by someone else who has left more than 2 years ago. 
The problem is: it doesn't set the dbkey correctly.


I get:




The tool xml is as follows:


   format="qsamples,qsamplespaired" label="Sample File" help="set of 
sequence files created by the 'select sequence files' tool">

   
   help="all reads will be mapped to this reference">

  
   

...


   label="qProject of ${sample_file.name}">

  
 



It seems you are missing a param_attribute="dbkey" here, it should be:


Cheers,
Nicola



  
   




The user can select a genome (based on the Bioconductor BSgenome 
packages) from the tab delimited fmi__quasr_genomes table, which 
looks like:


hg19BSghg19BSgBSgenome Hsapiens (UCSC hg19) 
BSgenome.Hsapiens.UCSC.hg19
hg18BSghg18BSgBSgenome Hsapiens (UCSC hg18) 
BSgenome.Hsapiens.UCSC.hg18
ce10BSgce10BSgBSgenome Celegans (UCSC ce10) 
BSgenome.Celegans.UCSC.ce10
ce6BSgce6BSgBSgenome Celegans (UCSC ce6) 
BSgenome.Celegans.UCSC.ce6

...


The tool works:
 - it displays the available genomes (BSgenome Hsapiens (UCSC hg19), 
hg18BSg hg18BSg BSgenome Hsapiens (UCSC hg18), etc)
 - once the job is submitted, it uses the right Bioconductor package 
(BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg18, etc)


However, instead of the dbkey (hg19BSg, hg18BSg, etc) I get:




Has anything changed with the 'action' tag since release 15.10? which 
makes this simple xml no longer working?


I have to admit, it does look different than the example on the wiki 
(https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax#A.3Cactions.3E_tag_set 
). I tried the code from the wiki which is based on the 
bowtie_wrapper 
(https://github.com/galaxyproject/tools-devteam/blob/master/tools/bowtie_wrappers/bowtie_wrapper.xml) 
as well:



  
  
  column="1" offset="0">
 compare="startswith" keep="False"/>

 
  

  


but it results in the same kind of error:



Thank you very much for any help/comments

Regards, Hans-Rudolf









___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
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___
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Re: [galaxy-dev] problems with 'action type="metadata" name="dbkey"' in tool xml

2016-08-16 Thread Nicola Soranzo


Hi Hans,
see my comment below.

On 16/08/16 09:51, Hans-Rudolf Hotz wrote:

Dear All


I am trying to move our Galaxy installation to new hardware and at the 
same time to a new version (the original is "15.10",minor version "2" 
via mercurial; the new is "16.04" via github):


So far, I am making good progress, but I am struggling with a tool 
which was written by someone else who has left more than 2 years ago. 
The problem is: it doesn't set the dbkey correctly.


I get:




The tool xml is as follows:


   format="qsamples,qsamplespaired" label="Sample File" help="set of 
sequence files created by the 'select sequence files' tool">

   
   help="all reads will be mapped to this reference">

  
   

...


   

  
 



It seems you are missing a param_attribute="dbkey" here, it should be:


Cheers,
Nicola



  
   




The user can select a genome (based on the Bioconductor BSgenome 
packages) from the tab delimited fmi__quasr_genomes table, which looks 
like:


hg19BSghg19BSgBSgenome Hsapiens (UCSC hg19) 
BSgenome.Hsapiens.UCSC.hg19
hg18BSghg18BSgBSgenome Hsapiens (UCSC hg18) 
BSgenome.Hsapiens.UCSC.hg18
ce10BSgce10BSgBSgenome Celegans (UCSC ce10) 
BSgenome.Celegans.UCSC.ce10
ce6BSgce6BSgBSgenome Celegans (UCSC ce6) 
BSgenome.Celegans.UCSC.ce6

...


The tool works:
 - it displays the available genomes (BSgenome Hsapiens (UCSC hg19), 
hg18BSg hg18BSg BSgenome Hsapiens (UCSC hg18), etc)
 - once the job is submitted, it uses the right Bioconductor package 
(BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg18, etc)


However, instead of the dbkey (hg19BSg, hg18BSg, etc) I get:




Has anything changed with the 'action' tag since release 15.10? which 
makes this simple xml no longer working?


I have to admit, it does look different than the example on the wiki 
(https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax#A.3Cactions.3E_tag_set 
). I tried the code from the wiki which is based on the bowtie_wrapper 
(https://github.com/galaxyproject/tools-devteam/blob/master/tools/bowtie_wrappers/bowtie_wrapper.xml) 
as well:



  
  
  column="1" offset="0">
 compare="startswith" keep="False"/>

 
  

  


but it results in the same kind of error:



Thank you very much for any help/comments

Regards, Hans-Rudolf









___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
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To search Galaxy mailing lists use the unified search at:
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[galaxy-dev] problems with 'action type="metadata" name="dbkey"' in tool xml

2016-08-16 Thread Hans-Rudolf Hotz


Dear All


I am trying to move our Galaxy installation to new hardware and at the 
same time to a new version (the original is "15.10",minor version "2" 
via mercurial; the new is "16.04" via github):


So far, I am making good progress, but I am struggling with a tool which 
was written by someone else who has left more than 2 years ago. The 
problem is: it doesn't set the dbkey correctly.


I get:




The tool xml is as follows:


   format="qsamples,qsamplespaired" label="Sample File" help="set of 
sequence files created by the 'select sequence files' tool">

   
   

  
   

...


   

  
 

 
  
   




The user can select a genome (based on the Bioconductor BSgenome 
packages) from the tab delimited fmi__quasr_genomes table, which looks like:


hg19BSg hg19BSg BSgenome Hsapiens (UCSC hg19)   BSgenome.Hsapiens.UCSC.hg19
hg18BSg hg18BSg BSgenome Hsapiens (UCSC hg18)   BSgenome.Hsapiens.UCSC.hg18
ce10BSg ce10BSg BSgenome Celegans (UCSC ce10)   BSgenome.Celegans.UCSC.ce10
ce6BSg  ce6BSg  BSgenome Celegans (UCSC ce6)BSgenome.Celegans.UCSC.ce6
...


The tool works:
 - it displays the available genomes (BSgenome Hsapiens (UCSC hg19), 
hg18BSg hg18BSg BSgenome Hsapiens (UCSC hg18), etc)
 - once the job is submitted, it uses the right Bioconductor package 
(BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg18, etc)


However, instead of the dbkey (hg19BSg, hg18BSg, etc) I get:




Has anything changed with the 'action' tag since release 15.10? which 
makes this simple xml no longer working?


I have to admit, it does look different than the example on the wiki 
(https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax#A.3Cactions.3E_tag_set 
). I tried the code from the wiki which is based on the bowtie_wrapper 
(https://github.com/galaxyproject/tools-devteam/blob/master/tools/bowtie_wrappers/bowtie_wrapper.xml) 
as well:



  

  column="1" offset="0">
 compare="startswith" keep="False"/>

 
 

  


but it results in the same kind of error:



Thank you very much for any help/comments

Regards, Hans-Rudolf







--



Hans-Rudolf Hotz, PhD
Bioinformatics Support

Friedrich Miescher Institute for Biomedical Research
Maulbeerstrasse 66
4058 Basel/Switzerland
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Re: [galaxy-dev] problems with 'action type="metadata" name="dbkey"' in tool xml

Re: [galaxy-dev] problems with 'action type="metadata" name="dbkey"' in tool xml

Re: [galaxy-dev] problems with 'action type="metadata" name="dbkey"' in tool xml

Re: [galaxy-dev] problems with 'action type="metadata" name="dbkey"' in tool xml

Re: [galaxy-dev] problems with 'action type="metadata" name="dbkey"' in tool xml

Re: [galaxy-dev] problems with 'action type="metadata" name="dbkey"' in tool xml

[galaxy-dev] problems with 'action type="metadata" name="dbkey"' in tool xml

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