Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

[mabernard]

 Dear all,

I work on many RADSeq projects, and I'm using Stacks for doing this. I
developpe(d) some scripts to describe the result, compute descriptive
statistics 

So I'm really interested to participate to this Hackathon, to give autonomy
to biologist.

So I'm in to  but not at the date you propose  sorry.
Is the possible the week before (between 7th and 11th) or 2 weeks later
(between 29th to 1st)?

Have a nice day

Maria

Gildas Le Corguillé  a écrit :


Hi All,

I have some knowledges about RADSeq ... at least about the
bioinformatics part. This technology is growing up in my lab (marine
science) and I'm involve in few of those projects.

So I'm in!

Gildas

Le 23/11/2015 20:59, Tiago Antao a écrit :

On Mon, 23 Nov 2015 18:03:05 +
John Chilton  wrote:


Someone should create an tools-iuc issue for this, I will certainly
participate also. I don't know anything RADSeq (or really much about
any kind of Seq) but I suspect I can find a way to help if there is a
TODO or ideas list that is tracked on github.


I am surrounded by RADSeq specialists (including some of the people
that developed the technology).
I will contact them to get a list of things needed (TODO) and probably
try to convince one of them to introduce the technology.
Unfortunately the geekiest of them all is not a big Galaxy fan, I am
afraid.

Tiago
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--
-
Gildas Le Corguillé - Bioinformatician/Bioanalyste
Plateforme ABiMS (Analyses and Bioinformatics for Marine Science)

Station Biologique de Roscoff - UPMC/CNRS - FR2424
Place Georges Teissier 29680 Roscoff FRANCE
tel: +33 2 98 29 23 81


http://abims.sb-roscoff.fr--
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[galaxy-dev] Does anybody know if ts (a task scheduler) is supported under Galaxy.

[Shane Kelly]

Hi,
I am looking for a simple task scheduler to use with Galaxy and
initially picked Torque, but since my server is a single box, Torque
would appear to be overkill?

Can I have any input from anyone who may have used it?

Thanks for any response
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Re: [galaxy-dev] Does anybody know if ts (a task scheduler) is supported under Galaxy.

[Eric Rasche]

I'd also recommend HTCondor.
Very easy to set up on debian/ubuntu, apt-get has a quick questionnaire that 
gets you up and running.

Cheers,
Eric

On 11/24/2015 11:46 AM, Björn Grüning wrote:
> Hi Shane,
>
> would Slurm work for you?
>
> http://slurm.schedmd.com/
>
> Cheers,
> Bjoern
>
> Am 24.11.2015 um 13:12 schrieb Shane Kelly:
> > Hi,
> > I am looking for a simple task scheduler to use with Galaxy and
> > initially picked Torque, but since my server is a single box, Torque
> > would appear to be overkill?
> >
> > Can I have any input from anyone who may have used it?
> >
> > Thanks for any response
> > ___
> > Please keep all replies on the list by using "reply all"
> > in your mail client.  To manage your subscriptions to this
> > and other Galaxy lists, please use the interface at:
> >   https://lists.galaxyproject.org/
> >
> > To search Galaxy mailing lists use the unified search at:
> >   http://galaxyproject.org/search/mailinglists/
> >
> ___
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>
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>

-- 
Eric Rasche
Programmer II

Center for Phage Technology
Rm 312A, BioBio
Texas A University
College Station, TX 77843
404-692-2048
e...@tamu.edu

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Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

[Björn Grüning]

Am 24.11.2015 um 20:36 schrieb Tiago Antao:
> On Tue, 24 Nov 2015 10:38:05 +0100
> mabernard  wrote:
> 
>> So I'm in to  but not at the date you propose  sorry.
>> Is the possible the week before (between 7th and 11th) or 2 weeks
>> later (between 29th to 1st)?
> 
> What about the 7th and 8th (March)?

What about a github issue and a doodle link?

> Is this OK for everybody?
> 
> 
> Thanks,
> Tiago
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Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

[Gildas Le Corguillé]

Hi All,

I have some knowledges about RADSeq ... at least about the 
bioinformatics part. This technology is growing up in my lab (marine 
science) and I'm involve in few of those projects.


So I'm in!

Gildas



Le 23/11/2015 20:59, Tiago Antao a écrit :

On Mon, 23 Nov 2015 18:03:05 +
John Chilton  wrote:


Someone should create an tools-iuc issue for this, I will certainly
participate also. I don't know anything RADSeq (or really much about
any kind of Seq) but I suspect I can find a way to help if there is a
TODO or ideas list that is tracked on github.


I am surrounded by RADSeq specialists (including some of the people
that developed the technology).
I will contact them to get a list of things needed (TODO) and probably
try to convince one of them to introduce the technology.
Unfortunately the geekiest of them all is not a big Galaxy fan, I am
afraid.

Tiago
___
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and other Galaxy lists, please use the interface at:
   https://lists.galaxyproject.org/

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--
-
Gildas Le Corguillé - Bioinformatician/Bioanalyste
Plateforme ABiMS (Analyses and Bioinformatics for Marine Science)

Station Biologique de Roscoff - UPMC/CNRS - FR2424
Place Georges Teissier 29680 Roscoff FRANCE
tel: +33 2 98 29 23 81
http://abims.sb-roscoff.fr
--

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