[galaxy-user] Isochore as Genome coordinates ?

2013-06-08 Thread Abdullah Al Mahmud
Hi,

In my account I have uploaded a file name iso_mm10.bed. The bed files
contains coordinates of 6018 isochores of mouse genome mm10. I want to
extract GC% of each scores with the list of genes present in each isochores.

I tried using extract features, geecee, and many other tools from galaxy.
But every time either it said error or no peak.

I will be grateful to you if you kindly give me an idea about how to solve
this problem.

Abdullah

-- 
Abdullah Al Mahmud, PhD
Postdoctoral fellow,
University of Montreal,
Lab. of Dr. Jacques Michaud
CHU Sainte-Justine Research Center,
Montreal, Quebec, Canada.
abdullah.al.mah...@umontreal.ca
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[galaxy-user] Generating gff file

2012-04-02 Thread Abdullah Al Mahmud
Hi,

Is it possible to generate gff file in galaxy which I can use in Seqmonk?

Abdullah

-- 
Abdullah Al Mahmud, PhD
Postdoctoral fellow
University of Montreal
Lab of Dr. Jacques Michaud
CHU Sainte-Justine Research Center,
3175, Cote-Sainte-Catherine, A-709
Montreal, Quebec, H3T 1C5, Canada.
abdullah.al.mah...@umontreal.ca
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The Galaxy User list should be used for the discussion of
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at usegalaxy.org.  Please keep all replies on the list by
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