The confidence intervals provided by Cufflinks/Cuffdiff are a good place to
start; any confidence interval that includes 0 should be looked on skeptically.
Good luck,
J.
On Jul 3, 2013, at 2:52 PM, Hoang, Thanh wrote:
Hi all,
I have been working on RNA-seq data analysis using TopHat and Cuffdiff. One
of the problem I have is to define the cutoff RPKM value to tell whether a
gene is expressed from the background noise?.
Could anybody give me a suggestion?
Thank you
Thanh
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