Re: [galaxy-user] Xgrid and Galaxy

2011-08-22 Thread Carlos Borroto
Hi Paul,

If you manage to get Xgrid working with galaxy, please share your
success, as I would love to try it.

But know that you can use SGE on Mac OS X. I was able to get it
working by following this blog post and screencast:
http://www.bioteam.net/2010/02/grid-engine-6-2-on-mac-os-x/

I tried to compile SGE by myself, but couldn't, so I used this binaries:
http://biote.am/sge/

--Carlos

On Fri, Aug 19, 2011 at 4:14 AM, Roman Valls brainst...@nopcode.org wrote:
 I'm no expert on MacOS but since Xgrid seems to have an opensource DRMAA
 implementation, it *might* be possible (with some
 integration/programming efforts):

 http://edbaskerville.com/2006/08/22/xgriddrmaa-011-with-examples/

 This blog author might help you if you run into issues..

 Hope that helps !

 On 2011-08-16 22:26, Paul Cantalupo wrote:
 Hello,

 I'm trying to determine if Galaxy will work with Xgrid to set up a
 small cluster of Mac's for next-gen sequencing projects. I saw on
 http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Production%20Server
 that Galaxy supports Torque PBS or Sun Grid. I don't think that Sun
 Grid runs on Snow Leopard and I don't know about Torque. Snow Leopard
 already comes with Xgrid so I was hoping to use it.

 Thank you for your help,


 Paul Cantalupo
 University of Pittsburgh
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[galaxy-user] Xgrid and Galaxy

2011-08-18 Thread Paul Cantalupo
Hello,

I'm trying to determine if Galaxy will work with Xgrid to set up a
small cluster of Mac's for next-gen sequencing projects. I saw on
http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Production%20Server
that Galaxy supports Torque PBS or Sun Grid. I don't think that Sun
Grid runs on Snow Leopard and I don't know about Torque. Snow Leopard
already comes with Xgrid so I was hoping to use it.

Thank you for your help,


Paul Cantalupo
University of Pittsburgh
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Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
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use the Galaxy Development list:

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