Re: [galaxy-user] RNA-DNA converter in Fasta format

2013-09-22 Thread Hoang, Thanh 
Thank you Bjoern,
I figured it out. Just use Fastx nucleotide exchanger.in Fastx-toolkit
Thanh


On Sun, Sep 22, 2013 at 4:51 AM, Björn Grüning 
bjoern.gruen...@pharmazie.uni-freiburg.de wrote:

 Hi Thanh,

 under FASTA manipulation I have one tool das is called RNA/DNA
 converter. If it is not available in your instance you need to install
 the FASTX-toolkit wrappers. These are available in the Tool Shed.

 Hope that helps,
 Bjoern


  Hi all,
  I want to to map my sequencing reads to miRNA reference database .
  Anyone know how to convert RNA to DNA in FASTA format ( U to T) .
  Thanks
  Thanh
 
 
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[galaxy-user] History will not load?

2013-09-22 Thread Maria Hoffman 
Hello,
I have been having trouble with Galaxy since yesterday. I have been trying
to run cuffdiff which has been waiting to run since Friday afternoon and
now my history will not even load (red error message shows up).
Any incite would be much appreciated.
Maria
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[galaxy-user] non-coding RNA annotation

2013-09-22 Thread Hoang, Thanh 
Hi all,
I am analyzing my small RNA sequencing data on mouse tissue. Does anyone
know where to download annotation file for non-coding RNA?
Thanks
Thanh
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