from:"Alexey Shvetsov"

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/pymol/

2024-05-17 Thread Alexey Shvetsov

commit: dfe0f62750dadf6273bd4146db194c7165181781
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Fri May 17 19:20:35 2024 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Fri May 17 19:20:35 2024 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=dfe0f627

sci-chemistry/pymol: Update to 3.0.0 and drop old

Closes: https://bugs.gentoo.org/862441
Closes: https://bugs.gentoo.org/910511
Closes: https://bugs.gentoo.org/929762
Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/pymol/Manifest   |   2 +-
 sci-chemistry/pymol/pymol-2.5.0-r3.ebuild  | 100 -
 .../{pymol-2.5.0-r5.ebuild => pymol-3.0.0.ebuild}  |   9 +-
 3 files changed, 6 insertions(+), 105 deletions(-)

diff --git a/sci-chemistry/pymol/Manifest b/sci-chemistry/pymol/Manifest
index 2c6723b71c25..2ef25b2b27fa 100644
--- a/sci-chemistry/pymol/Manifest
+++ b/sci-chemistry/pymol/Manifest
@@ -1,2 +1,2 @@
 DIST pymol-1.8.4.0.png.xz 19528 BLAKE2B 
f3d23d4cedca3d8bb96b20646a548da4be570697e3346a11b01c5c3599b536ba4697be08472dfa8a4f6533167defc1a37a1de332931a73857319cb28fd42cd2b
 SHA512 
40bb0d3f226476f6e047b5361956aad955232a97641474765eaa5204f0539aee3810e0266213618a45364f9f31f6eb18380b17e0c79f64065f7b62a9016caa7c
-DIST pymol-2.5.0.tar.gz 10470268 BLAKE2B 
ad3721432001053be93afe755f531ae47348213b042e84dae33cd79580428c9ac3d00629afa0222e4081807dc80e2dd69c3963a457666b5975b6263b988d02d9
 SHA512 
19f21b8f735fda5314abf202d56f3c81c7251bf6ef0df73ccee534d9c08035f4ef6155ffb68e09d7717a0fb5ba7289bbfa440691bea4cec0de7199c9e858ea91
+DIST pymol-3.0.0.tar.gz 29510174 BLAKE2B 
b67818e408045e386e44a203f29cd94a0ce34ec706776d29f78f1720bdc5c79d88f3b3e178882295b5a636d97fe70ff49eb1b021a9a6b96f0f4216bc392219d1
 SHA512 
eab05a46220339a05d8d4facdce6bfa08c6fc8a858a7b228236ef6c4054207059ef0f53a26bedebe4084a74b510015937fb4477f99612b21412cd75bf0c376a2

diff --git a/sci-chemistry/pymol/pymol-2.5.0-r3.ebuild 
b/sci-chemistry/pymol/pymol-2.5.0-r3.ebuild
deleted file mode 100644
index 317350640580..
--- a/sci-chemistry/pymol/pymol-2.5.0-r3.ebuild
+++ /dev/null
@@ -1,100 +0,0 @@
-# Copyright 1999-2024 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{9..11} )
-DISTUTILS_USE_SETUPTOOLS=no
-DISTUTILS_EXT=1
-
-inherit desktop flag-o-matic xdg distutils-r1
-
-DESCRIPTION="A Python-extensible molecular graphics system"
-HOMEPAGE="https://www.pymol.org/;
-SRC_URI="
-   https://dev.gentoo.org/~pacho/${PN}/${PN}-1.8.4.0.png.xz
-   https://github.com/schrodinger/pymol-open-source/archive/v${PV}.tar.gz 
-> ${P}.tar.gz
-   "
-LICENSE="BitstreamVera BSD freedist HPND OFL-1.0 public-domain UoI-NCSA" 
#844991
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos"
-IUSE="+netcdf web"
-
-DEPEND="
-   dev-cpp/msgpack-cxx
-   dev-libs/mmtf-cpp
-   dev-python/pyopengl[${PYTHON_USEDEP}]
-   dev-python/PyQt5[opengl,${PYTHON_USEDEP}]
-   dev-python/numpy[${PYTHON_USEDEP}]
-   dev-python/pmw[${PYTHON_USEDEP}]
-   media-libs/freetype:2
-   media-libs/glew:0=
-   media-libs/glm
-   media-libs/libpng:0=
-   media-video/mpeg-tools
-   sys-libs/zlib
-   netcdf? ( sci-libs/netcdf:0= )
-"
-RDEPEND="${DEPEND}
-   sci-chemistry/chemical-mime-data
-"
-
-S="${WORKDIR}"/${PN}-open-source-${PV}
-
-python_prepare_all() {
-   sed \
-   -e "s:\"/usr:\"${EPREFIX}/usr:g" \
-   -e "/ext_comp_args.*+=/s:\[.*\]$:\[\]:g" \
-   -i setup.py || die
-
-   sed \
-   -e "s:/opt/local:${EPREFIX}/usr:g" \
-   -e '/ext_comp_args/s:\[.*\]:[]:g' \
-   -i setup.py || die
-   sed \
-   -e "s:\['msgpackc'\]:\['msgpack'\]:g" \
-   -i setup.py || die
-
-   append-cxxflags -std=c++0x
-
-   distutils-r1_python_prepare_all
-}
-
-python_configure_all() {
-   use !netcdf && DISTUTILS_ARGS=( --no-vmd-plugins )
-}
-
-python_install() {
-   distutils-r1_python_install \
-   --pymol-path="${EPREFIX}/usr/share/pymol"
-
-   sed \
-   -e '1i#!/usr/bin/env python' \
-   "${D}/$(python_get_sitedir)"/pymol/__init__.py > "${T}"/${PN} 
|| die
-   python_doscript "${T}"/${PN}
-}
-
-python_install_all() {
-   distutils-r1_python_install_all
-
-   # These environment variables should not go in the wrapper script, or 
else
-   # it will be impossible to use the PyMOL libraries from Python.
-   cat >> "${T}"/20pymol <<- EOF || die
-   PYMOL_PATH="${EPREFIX}/usr/share/pymol"
-   PYMOL_DATA="${EPREFIX}/usr/share/pymol/data"
-   PYMOL_S

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2024-05-17 Thread Alexey Shvetsov

commit: 1fd789f0a0a98b5048aeab92667a374e5c420fb6
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Fri May 17 06:56:22 2024 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Fri May 17 06:57:05 2024 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1fd789f0

sci-chemistry/gromacs: add 2024.2

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/Manifest  |   3 +
 sci-chemistry/gromacs/gromacs-2024.2.ebuild | 335 
 2 files changed, 338 insertions(+)

diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest
index e49864e592ec..ded1c93522be 100644
--- a/sci-chemistry/gromacs/Manifest
+++ b/sci-chemistry/gromacs/Manifest
@@ -3,16 +3,19 @@ DIST gromacs-2021.7.tar.gz 38028032 BLAKE2B 
2dc1b15ca8692ca5cf4ad1c7a266b9e2ced0
 DIST gromacs-2022.6.tar.gz 40330705 BLAKE2B 
fdafbd5b2a92d6022dec3e79e961fef220f1eba42850916e7cb70ef459a8d9c6ebc8c1bbe3c105f5b23161dd5c552ec00505d7c0036649b782cf52c311498743
 SHA512 
91217394f534ca8f78f73189059712e1c2cd354b658722f23768b12748f7bfaf1a5e95227c5ed1b69c1a9b72c3174e9600a712c157ea2f27156387efb823dd67
 DIST gromacs-2023.4.tar.gz 42044149 BLAKE2B 
2c13a04ddbfc167a7887d44bb6fdacde4ece4e8cf2ba920f453fc6150423c3cae39cd1afe0eebb52b9fbc72fe37fee527c83227a0f3fe21b289655b5c1cd29c5
 SHA512 
7913348d0da25e095b795123894f4e2007f66cf2455664edeb7bc1edc09f2e0da9911bc9501e3001278ab59917ccef838c485e6b6533c1c816c54c6dbd56350c
 DIST gromacs-2024.1.tar.gz 42324773 BLAKE2B 
6600c802c39bf7c36d8e388ced202504dcceb3ec018d5f48af4f55e43dd170157a9b6335ce1b20a73623d05a391787936c2ab6ee48ab031d17078256eb7153c5
 SHA512 
fea88fac28ec142201eec1cea984eabd9db43346254ac555954a13fdbae5a5b00281a17efc8dba8ab0ac42794e3cce41b314c5cb36fb4292a1c6d2668b2ba192
+DIST gromacs-2024.2.tar.gz 42367929 BLAKE2B 
3ffdbc075c3b92d1200376b45b0599eafc15454830f0a5b1c1e250a50d8fcd16a6a904c5f04979328b1afc89e6c77b15df44d9c240425507bafe0689107bf9a0
 SHA512 
aa6c0ae3849d6e58ae43ffef6ef90d06f62e53ab70047c643c90e9f3ac7305c2d52bb5c9da02b174a6244e8a6adfb6d205d1c9d22312709a1b358923f5d10741
 DIST gromacs-2024.tar.gz 42455653 BLAKE2B 
86446c5e95f9ddaf718126c409389730ee1642f36c3e0d844eb4b3a640c275e7979581365dacb57ac66daec296bbd94be6d5c0376f7255d3d3950f6759f8d69a
 SHA512 
d64bf3cbe579003ce37dfd3d27c68746a04360d9d5491c638f3f2bd9af2c938504b0c9710c62e85225370ddf5418e6ebc2422033e46af5eee6e4aaa53699fed7
 DIST manual-2020.7.pdf 11850780 BLAKE2B 
38594e87993badfbbcf47d6010a7f67d3c3426dab85e1462916b4d62be27b5764953f912cf2b71ee24877e0bfa27b3f74431da2da81b4977d58cb66b2cc795a3
 SHA512 
4f184f2c90e0bac01a48069cc546cd5b04fa5f543f90dd2d68c6d17be278152fd09456b6a6c5c8236f8fb85a174d6ec7a1c7b44d437b4e6fea5d0ada73cec0f6
 DIST manual-2021.7.pdf 12256526 BLAKE2B 
6f298d7dac142f66914bbc2ea7d6ca70c4aeafaf33ccf12336d5cec64b1f1097b5332c767bb411ccef706ec6184479a84bcf59bda21c4249d45d8ce3dea08e79
 SHA512 
197765accb8ab6c5f1cc94b2697ff1817e157d85fa231dfe36a85036076e04da2a8035de66aba4f46c6dd7f553176357b94c92e1da5d1dabc574c627deee5279
 DIST manual-2022.6.pdf 13081140 BLAKE2B 
e7ae3f23ddc076c295be2c464fe2177d6d6848d070ee5eba2b572e996ae08adead898ec6432b123802907f64983aa4d2e17426be8d540c48d12398a479519f9e
 SHA512 
4724888b3c33c4fa4a035d5fb2f8c51496f67e1ee312676510d5ba74bc3cc1571e71e84464585b87ad0133e8e736343ae382bf8f7b556633f86a99560213d271
 DIST manual-2023.4.pdf 13572503 BLAKE2B 
f9985c6ceed2dd66d49c9e9817651b0250994aacb571a552dde6b82a7c02471409cc34622d216290e8ceb3934cf4f51d98d95e1c1f584d1deb5e64c3e02c4b04
 SHA512 
b42e53f405a8ff4387970e4a1a199452bcb11befbf492cbd78b81229db2b0991e5c0c549162937e83eec79b15c71b441474b1338ed9050fdd132ae2ba09175b6
 DIST manual-2024.1.pdf 13651959 BLAKE2B 
d76e112d3d22e6638e733dec7db713aa65e16099e98935e0bfe8842966a51a04ca370e9afb62ad5b30f3adced1c67574a21445b61f3ce5a753e5d8680f87967e
 SHA512 
3f1aa3433095983cf7ce5c54383bc384d25d9f3b22357e0360639f619c740df37ec0c827ccc9d48b8f93e3877315ee82f740c486b231f777e1be35e44fd823fe
+DIST manual-2024.2.pdf 13664758 BLAKE2B 
05138a16f4173d4b9a2c855ebccb021ca52d6d556f93a4d1536aaa687edcfd887c20a86a36cbafc245566e6de3bf4a940d082fe1d88bbab16df9d7d6e59fa8a0
 SHA512 
1c5691cbbd416142ed92124d543c8a60afbef78d82b303aec773f0a930c22f97f492250610090e42497bacdff5cb007ccdc18e62f98e3d8c63359d2c7810624c
 DIST manual-2024.pdf 13644437 BLAKE2B 
19d547686d5c5be5e1236aba648e8afb174b281802ab76e020466953ab5d2dd98701f21eb4736cb449b61960b5b7aadce6711b2b0309a41dd1997d7383bce09e
 SHA512 
b00048651f1f81f9024ba5c4c02ad66d2b07eb7b816f0489568fb64859cac515b885a5cb4640c8b5bd7c3620655a7ebc5fc2e4e4cbb8e952ffb0c9b5815ae661
 DIST regressiontests-2020.7.tar.gz 48541487 BLAKE2B 
255608b52158c6c01e7c7c4dcf075128ecf22b2f26d32e8c203de8a4bc69c60ec95f49cf8ccd64abc3073c5e8dca9d6b01daed9dfb8f67bce2dd068ed01acd05
 SHA512 
2458582f94f3c9f4e1454824ce3940b4f5b6cb2151d06846c42e7a9448296fd2a6df4f53be9624e0d3317d2b59f89bb5348eb8b2970d7b46ac22ca989ef3458a
 DIST regressiontests-2021.7.tar.gz 4853750

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/modeller/files/, sci-chemistry/modeller/

2024-05-17 Thread Alexey Shvetsov

commit: 32e720fc4ab6c8c11c86f1518cad6b0cb77d4dbf
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Fri May 17 06:54:45 2024 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Fri May 17 06:57:05 2024 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=32e720fc

sci-chemistry/modeller: add 10.5, drop 9.25

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/modeller/Manifest|  2 +-
 .../modeller/files/modeller-10.5-fix-except.patch  | 29 ++
 .../{modeller-9.25.ebuild => modeller-10.5.ebuild} | 15 ++-
 3 files changed, 37 insertions(+), 9 deletions(-)

diff --git a/sci-chemistry/modeller/Manifest b/sci-chemistry/modeller/Manifest
index e3d097b4b75d..7f12b0817212 100644
--- a/sci-chemistry/modeller/Manifest
+++ b/sci-chemistry/modeller/Manifest
@@ -1 +1 @@
-DIST modeller-9.25.tar.gz 44820658 BLAKE2B 
b3e8a3cc8cc70689a25bc5ed2eee294d67bef8eea9ed4b64d41aba3a27c0bc428ae58e74d734da0eaab7e4fabb213d098b9ba66b9569557159ac7d4a58244b0a
 SHA512 
93f273aba0ec0f884cde5bbcc24769a09386bfc6bf1744d80001e41924b1a682225ba3c554fb9898ef3bfd1fd8451f9458bb92431b20f2f51b01781e79686c91
+DIST modeller-10.5.tar.gz 38272541 BLAKE2B 
9c71a9f1e4c34c91852db73ebf86f71cf355217d6889566ff6840dc6874d4906b989a36f3dd642ba4e4d1fe671c1a15753a33e7fabb53adc9182c76fe4fdb6c4
 SHA512 
666c5367a14084438c96b68ba0779ebd97ca831a4a6538f66e54b63657c8e13b85931c2de8300311f1df7d02907b2ec61f27f95b0704f2c6a313b6baee56febc

diff --git a/sci-chemistry/modeller/files/modeller-10.5-fix-except.patch 
b/sci-chemistry/modeller/files/modeller-10.5-fix-except.patch
new file mode 100644
index ..f480a8229bf9
--- /dev/null
+++ b/sci-chemistry/modeller/files/modeller-10.5-fix-except.patch
@@ -0,0 +1,29 @@
+--- a/modlib/modeller/top_interpreter/__init__.py  2024-03-27 
15:52:04.005550025 +0300
 b/modlib/modeller/top_interpreter/__init__.py  2024-03-27 
15:54:00.776897686 +0300
+@@ -65,7 +65,7 @@
+ if len(line) > 0:
+ try:
+ self._parse_top_ini_line(line.split(None, 4), vars)
+-except TypeError, detail:  # noqa: E999
++except (TypeError, detail):  # noqa: E999
+ mod_log_write("read_top__E> " + str(detail))
+ mod_log_write(" top.ini line: " + line)
+ raise
+@@ -115,7 +115,7 @@
+ try:
+ fh = self._open_include_file(
+ self.variables['include_file'])
+-except IOError, detail:
++except (IOError, detail):
+ mod_log_write("runlines__E> " + str(detail))
+ mod_log_write(" TOP Command line: " + line)
+ raise
+@@ -162,7 +162,7 @@
+ indxca = self._run_top_cmd(cmd, indxca, lines, callstack,
+subrout)
+ _modeller.mod_top_post()
+-except (IndexError, SyntaxError, TypeError), detail:
++except (IndexError, SyntaxError, TypeError, detail):
+ mod_log_write("runlines__E> " + str(detail))
+ mod_log_write(" TOP Command line: " + line)
+ raise

diff --git a/sci-chemistry/modeller/modeller-9.25.ebuild 
b/sci-chemistry/modeller/modeller-10.5.ebuild
similarity index 93%
rename from sci-chemistry/modeller/modeller-9.25.ebuild
rename to sci-chemistry/modeller/modeller-10.5.ebuild
index 1401279be237..80718ec876c8 100644
--- a/sci-chemistry/modeller/modeller-9.25.ebuild
+++ b/sci-chemistry/modeller/modeller-10.5.ebuild
@@ -1,10 +1,11 @@
-# Copyright 1999-2023 Gentoo Authors
+# Copyright 1999-2024 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
 
-PYTHON_COMPAT=( python3_{9..10} )
-DISTUTILS_USE_SETUPTOOLS=no
+PYTHON_COMPAT=( python3_{10..12} )
+DISTUTILS_USE_PEP517=setuptools
+DISTUTILS_EXT=1
 
 inherit distutils-r1
 
@@ -13,14 +14,15 @@ HOMEPAGE="https://salilab.org/modeller/;
 SRC_URI="https://salilab.org/${PN}/${PV}/${P}.tar.gz;
 
 LICENSE="modeller"
+SLOT="0"
 KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
 IUSE="doc examples"
-SLOT="0"
 
 RESTRICT="mirror"
 
 DEPEND=">=dev-lang/swig-1.3"
-RDEPEND=""
+
+PATCHES=( "${FILESDIR}/${P}-fix-except.patch" )
 
 INPATH="${EPREFIX}"/opt/modeller${ver}
 
@@ -40,8 +42,6 @@ pkg_setup() {
 python_prepare_all() {
sed "s:i386-intel8:${EXECTYPE}:g" -i src/swig/setup.py || die
rm -rf modlib/modeller/python_library || die
-   sed -i '1 i\#!/usr/bin/python' bin/modslave.py || die
-   2to3 -w -n modlib/modeller || die
distutils-r1_python_prepare_all
 }
 
@@ -77,7 +77,6 @@ python_install_all() {

[gentoo-commits] repo/gentoo:master commit in: dev-python/pmw/

2024-03-27 Thread Alexey Shvetsov

commit: 79d4d97f2d8d6299bec282110448c078af577050
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Wed Mar 27 12:23:48 2024 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Wed Mar 27 12:24:58 2024 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=79d4d97f

dev-python/pmw: add 2.1.1

Closes: https://bugs.gentoo.org/905446
Signed-off-by: Alexey Shvetsov  gentoo.org>

 dev-python/pmw/Manifest |  1 +
 dev-python/pmw/pmw-2.1.1.ebuild | 43 +
 2 files changed, 44 insertions(+)

diff --git a/dev-python/pmw/Manifest b/dev-python/pmw/Manifest
index 42cbe402c60e..db7c6f3cc171 100644
--- a/dev-python/pmw/Manifest
+++ b/dev-python/pmw/Manifest
@@ -1 +1,2 @@
 DIST Pmw-2.0.1.tar.gz 830448 BLAKE2B 
c78fef1570a34b9784f936f16856c4450164d8a232770e59cc084c1113888af8ee002cd1c7ddeadcddaacb5eae9ff58fcbfc270fc066875523e31a9d26770cd3
 SHA512 
99654e961aa40a64eebc08fe473e94da0ce431e6465255c68c251dfd544a51edef1a5d97dfd89ce756eb5f7fcf917dbef27f646ba9451ab72f3d460daa09a556
+DIST Pmw-2.1.1.tar.gz 1077119 BLAKE2B 
3e78796489d996df8fbcaca119f03b718f5457d38af175232c055c1c94e6c98c3f198e3dd0859a4af1cc88f36df83ed57c0d8ee67f90362a8590de5a37d2f669
 SHA512 
7f4c3181b0ae546f9f89cf666917fd9ea0161a2c4a4e6b5756e0aeb543fcd3ed4598c83e294b04312fea6a386b06b370668b4400f1497cc8b2fc2ab19a3fdd3d

diff --git a/dev-python/pmw/pmw-2.1.1.ebuild b/dev-python/pmw/pmw-2.1.1.ebuild
new file mode 100644
index ..b9c3e6317b8c
--- /dev/null
+++ b/dev-python/pmw/pmw-2.1.1.ebuild
@@ -0,0 +1,43 @@
+# Copyright 1999-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=setuptools
+PYPI_NO_NORMALIZE=1
+PYPI_PN=${PN^}
+PYTHON_COMPAT=( python3_{10..12} )
+PYTHON_REQ_USE="tk"
+
+inherit distutils-r1 virtualx pypi
+
+DESCRIPTION="Toolkit for building high-level compound Python widgets using the 
Tkinter module"
+HOMEPAGE="https://pypi.org/project/Pmw/;
+
+LICENSE="BSD"
+SLOT="py3"
+KEYWORDS="~alpha ~amd64 ~ia64 ~ppc ~sparc ~x86 ~amd64-linux ~x86-linux 
~x64-macos"
+IUSE="doc test"
+# https://sourceforge.net/p/pmw/bugs/39/
+RESTRICT="test"
+
+DEPEND="!dev-python/pmw:0"
+RDEPEND="${DEPEND}"
+
+python_test() {
+   VIRTUALX_COMMAND="${PYTHON}"
+   cd "${BUILD_DIR}/lib/Pmw/Pmw_${PV//./_}/" || die
+   cp tests/{flagup.bmp,earthris.gif} . || die
+   for test in tests/*_test.py; do
+   echo "running test "$test
+   PYTHONPATH=tests:../../ virtx emake -j1 $test || die
+   done
+}
+
+python_install_all() {
+   local DIR="Pmw/Pmw_${PV//./_}"
+
+   use doc && HTML_DOCS=( "${DIR}"/doc/. )
+
+   distutils-r1_python_install_all
+}

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/autodock_vina/

2024-03-26 Thread Alexey Shvetsov

commit: e946f4c6951ed2ea86b806b3bef37b8c5ba7af01
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Tue Mar  5 10:57:33 2024 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Tue Mar 26 10:53:17 2024 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e946f4c6

sci-chemistry/autodock_vina: add github upstream metadata

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/autodock_vina/metadata.xml | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/sci-chemistry/autodock_vina/metadata.xml 
b/sci-chemistry/autodock_vina/metadata.xml
index f29cb87a5701..ec0a09453889 100644
--- a/sci-chemistry/autodock_vina/metadata.xml
+++ b/sci-chemistry/autodock_vina/metadata.xml
@@ -17,4 +17,7 @@
multithreading
Journal of Computational Chemistry 31 (2010) 455-461

+   
+   ccsb-scripps/AutoDock-Vina
+

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/autodock_vina/files/, sci-chemistry/autodock_vina/

2024-03-26 Thread Alexey Shvetsov

commit: c2eae57dd0815a47e8c59e0c6dbcda1eea67f949
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Tue Mar  5 10:56:54 2024 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Tue Mar 26 10:53:06 2024 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c2eae57d

sci-chemistry/autodock_vina: add 1.2.5

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/autodock_vina/Manifest   |  1 +
 .../autodock_vina/autodock_vina-1.2.5.ebuild   | 50 +
 .../files/autodock_vina-1.2.5-gentoo.patch | 64 ++
 3 files changed, 115 insertions(+)

diff --git a/sci-chemistry/autodock_vina/Manifest 
b/sci-chemistry/autodock_vina/Manifest
index 67f2032d2856..e4088c449178 100644
--- a/sci-chemistry/autodock_vina/Manifest
+++ b/sci-chemistry/autodock_vina/Manifest
@@ -1 +1,2 @@
+DIST autodock_vina-1.2.5.tar.gz 24158966 BLAKE2B 
c11493fcb35d409b97f639c4da48967d5df450781d412d80a951b95162555f4b1dfba809a01062136a7f0664c0b9a01a42b5403ee1d278a57afd669cf1f96321
 SHA512 
d36908e5833d22bcbc4dae353ef32b905d6eb46511302f7583a291398bfadff5e75fc99ce7b380860578b2257e5c32434cc75b1ca51fafb4b5f12d9477a878e9
 DIST autodock_vina_1_1_2.tgz 67366 BLAKE2B 
dc754bf522795ebfbfcf89a2df4e3761d941c1f0ce05cf56898720c1e855f5dd00fd2a583f5a8d218fa2e738d37e014a9b3239b9aa989b9018a6a33f8f0bd02c
 SHA512 
f704af322ebc192117c49d0cf8a3f217105beccb7b47d6361665470894ef7a9f91fc4b5f07cc9aff56e497bfa80953e40e39090c8394a095c61597756e333ae9

diff --git a/sci-chemistry/autodock_vina/autodock_vina-1.2.5.ebuild 
b/sci-chemistry/autodock_vina/autodock_vina-1.2.5.ebuild
new file mode 100644
index ..e9edf1f9c991
--- /dev/null
+++ b/sci-chemistry/autodock_vina/autodock_vina-1.2.5.ebuild
@@ -0,0 +1,50 @@
+# Copyright 1999-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit flag-o-matic toolchain-funcs
+
+MY_PN=AutoDock-Vina
+
+DESCRIPTION="Program for drug discovery, molecular docking and virtual 
screening"
+HOMEPAGE="http://vina.scripps.edu/;
+SRC_URI="https://github.com/ccsb-scripps/AutoDock-Vina/archive/refs/tags/v${PV}.tar.gz
 -> ${P}.tar.gz"
+
+S="${WORKDIR}/${MY_PN}-${PV}/build/linux/release"
+
+LICENSE="Apache-2.0"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="debug"
+
+RDEPEND="dev-libs/boost:="
+DEPEND="${RDEPEND}"
+
+PATCHES=(
+   "${FILESDIR}"/${P}-gentoo.patch
+)
+
+src_prepare() {
+   cd "${WORKDIR}/${MY_PN}-${PV}" || die
+   pwd
+   sed -e "s:VERSION:\"${PV}\":g" \
+   -i src/main/main.cpp \
+   -i src/split/split.cpp || die
+   default
+}
+
+src_configure() {
+   append-cxxflags -DBOOST_FILESYSTEM_VERSION=3 
-DBOOST_TIMER_ENABLE_DEPRECATED -std=c++14
+}
+
+src_compile() {
+   emake \
+   BASE="${EPREFIX}"/usr/ \
+   GPP="$(tc-getCXX)" \
+   C_OPTIONS=$(usex debug '' -DNDEBUG)
+}
+
+src_install() {
+   dobin vina{,_split}
+}

diff --git a/sci-chemistry/autodock_vina/files/autodock_vina-1.2.5-gentoo.patch 
b/sci-chemistry/autodock_vina/files/autodock_vina-1.2.5-gentoo.patch
new file mode 100644
index ..e7bf1d5007ff
--- /dev/null
+++ b/sci-chemistry/autodock_vina/files/autodock_vina-1.2.5-gentoo.patch
@@ -0,0 +1,64 @@
+diff -urN AutoDock-Vina-1.2.5.orig/build/linux/debug/Makefile 
AutoDock-Vina-1.2.5/build/linux/debug/Makefile
+--- AutoDock-Vina-1.2.5.orig/build/linux/debug/Makefile2024-03-05 
13:23:49.210511903 +0300
 AutoDock-Vina-1.2.5/build/linux/debug/Makefile 2024-03-05 
13:25:34.028499976 +0300
+@@ -1,7 +1,7 @@
+ BASE=/usr
+ BOOST_VERSION=
+ BOOST_INCLUDE = $(BASE)/include
+-C_PLATFORM=-static -pthread
++C_PLATFORM=-pthread
+ GPP=g++
+ C_OPTIONS= -g -std=gnu++11
+ BOOST_LIB_VERSION=
+diff -urN AutoDock-Vina-1.2.5.orig/build/linux/release/Makefile 
AutoDock-Vina-1.2.5/build/linux/release/Makefile
+--- AutoDock-Vina-1.2.5.orig/build/linux/release/Makefile  2024-03-05 
13:23:49.213845279 +0300
 AutoDock-Vina-1.2.5/build/linux/release/Makefile   2024-03-05 
13:26:10.285621339 +0300
+@@ -1,7 +1,7 @@
+ BASE=/usr/local
+ BOOST_VERSION=
+ BOOST_INCLUDE = $(BASE)/include
+-C_PLATFORM=-static -pthread
++C_PLATFORM=-pthread
+ GPP=g++
+ C_OPTIONS= -O3 -DNDEBUG -std=c++11
+ BOOST_LIB_VERSION=
+diff -urN AutoDock-Vina-1.2.5.orig/build/makefile_common 
AutoDock-Vina-1.2.5/build/makefile_common
+--- AutoDock-Vina-1.2.5.orig/build/makefile_common 2024-03-05 
13:23:49.213845279 +0300
 AutoDock-Vina-1.2.5/build/makefile_common  2024-03-05 13:28:30.557370911 
+0300
+@@ -14,7 +14,7 @@
+ #CC = ${GPP} ${C_PLATFORM} -ansi -pedantic -Wno-long-long ${C_OPTIONS} 
$(INCFLAGS)
+ CC = ${GPP} ${C_PLATFORM} -ansi -Wno-long-long ${C_OPTIONS} $(INCFLAGS)
+ 
+-LDFLAGS = -L$(BASE)/lib -L.
++LDFLAGS = -L.
+ 
+ # test if boost_thread-m

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/autodock_vina/

2024-03-02 Thread Alexey Shvetsov

commit: 8ff06565cfa9e2d6114008541f2fae2c23f9e12c
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Sat Mar  2 21:14:38 2024 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Sat Mar  2 21:14:38 2024 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8ff06565

sci-chemistry/autodock_vina: Fix build with recent boost

Closes: https://bugs.gentoo.org/913037
Closes: https://bugs.gentoo.org/924622
Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/autodock_vina/autodock_vina-1.1.2-r1.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-chemistry/autodock_vina/autodock_vina-1.1.2-r1.ebuild 
b/sci-chemistry/autodock_vina/autodock_vina-1.1.2-r1.ebuild
index a6495591339a..63810da09284 100644
--- a/sci-chemistry/autodock_vina/autodock_vina-1.1.2-r1.ebuild
+++ b/sci-chemistry/autodock_vina/autodock_vina-1.1.2-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2023 Gentoo Authors
+# Copyright 1999-2024 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
@@ -33,7 +33,7 @@ src_prepare() {
 }
 
 src_configure() {
-   append-cxxflags -DBOOST_FILESYSTEM_VERSION=3 -std=c++11
+   append-cxxflags -DBOOST_FILESYSTEM_VERSION=3 
-DBOOST_TIMER_ENABLE_DEPRECATED -std=c++14
 }
 
 src_compile() {

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2024-02-29 Thread Alexey Shvetsov

commit: 6c2b695c5b63e8e097173bda873a4b2e649ecbde
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Thu Feb 29 19:56:43 2024 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Feb 29 19:56:43 2024 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6c2b695c

sci-chemistry/gromacs: add 2023.4, drop 2023.3

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/Manifest  | 6 +++---
 .../gromacs/{gromacs-2023.3.ebuild => gromacs-2023.4.ebuild}| 0
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest
index 6a6d847781b0..fc5ddbd370bd 100644
--- a/sci-chemistry/gromacs/Manifest
+++ b/sci-chemistry/gromacs/Manifest
@@ -3,7 +3,7 @@ DIST gromacs-2019.6.tar.gz 33446147 BLAKE2B 
adc21fb6b841b06d499607f8c0166a673645
 DIST gromacs-2020.7.tar.gz 29175554 BLAKE2B 
98f1aa415946f8eb113febc81105f0c1b0919b96fc3c55a0ab83bf3950ff509b81eade92e645adb0bc2b407df239e20cf3f19828b6e08616437c8693c1fddcc8
 SHA512 
1d375c44cec38445e56cea252623b5b6c565680268999d4b6c14d6dc38759a27227655b2d29efaab9f9115d3677b446cb555e11cddafa0dc10c4827caaa2477b
 DIST gromacs-2021.7.tar.gz 38028032 BLAKE2B 
2dc1b15ca8692ca5cf4ad1c7a266b9e2ced064d34a63cef61fea69e48231dd0310cfd8484d29c56cdb599f795d7655959f40038ac933b46ad2841d57bf2b3646
 SHA512 
ca478533da3bcb377fda30682660db8eb13beef6456fac6013a1a97ec3be60b5594567412e1e2a31392e484f9a40a22da1f12336f4738cf0422ff4f3e8814609
 DIST gromacs-2022.6.tar.gz 40330705 BLAKE2B 
fdafbd5b2a92d6022dec3e79e961fef220f1eba42850916e7cb70ef459a8d9c6ebc8c1bbe3c105f5b23161dd5c552ec00505d7c0036649b782cf52c311498743
 SHA512 
91217394f534ca8f78f73189059712e1c2cd354b658722f23768b12748f7bfaf1a5e95227c5ed1b69c1a9b72c3174e9600a712c157ea2f27156387efb823dd67
-DIST gromacs-2023.3.tar.gz 42071770 BLAKE2B 
dea0f6b0ccd67bfa4fc58c06bd3eda6d17a7f4b1c6746c2743860cf00ba514884a27140b65b7830ca340c233510ace1734ecc09e393be3e9761e31b9e4abfeb6
 SHA512 
016181be78887b0e31bc7fd124ac7c25c923c6bab1ffe43d3b4a744ae68203bb9d9f976c4c81bce344f4ea8e9d610ebd5b631b2202fcd6cfefd8c1ad0ebfe10d
+DIST gromacs-2023.4.tar.gz 42044149 BLAKE2B 
2c13a04ddbfc167a7887d44bb6fdacde4ece4e8cf2ba920f453fc6150423c3cae39cd1afe0eebb52b9fbc72fe37fee527c83227a0f3fe21b289655b5c1cd29c5
 SHA512 
7913348d0da25e095b795123894f4e2007f66cf2455664edeb7bc1edc09f2e0da9911bc9501e3001278ab59917ccef838c485e6b6533c1c816c54c6dbd56350c
 DIST gromacs-2024.1.tar.gz 42324773 BLAKE2B 
6600c802c39bf7c36d8e388ced202504dcceb3ec018d5f48af4f55e43dd170157a9b6335ce1b20a73623d05a391787936c2ab6ee48ab031d17078256eb7153c5
 SHA512 
fea88fac28ec142201eec1cea984eabd9db43346254ac555954a13fdbae5a5b00281a17efc8dba8ab0ac42794e3cce41b314c5cb36fb4292a1c6d2668b2ba192
 DIST gromacs-2024.tar.gz 42455653 BLAKE2B 
86446c5e95f9ddaf718126c409389730ee1642f36c3e0d844eb4b3a640c275e7979581365dacb57ac66daec296bbd94be6d5c0376f7255d3d3950f6759f8d69a
 SHA512 
d64bf3cbe579003ce37dfd3d27c68746a04360d9d5491c638f3f2bd9af2c938504b0c9710c62e85225370ddf5418e6ebc2422033e46af5eee6e4aaa53699fed7
 DIST manual-2018.8.pdf 10025023 BLAKE2B 
afb0a6e6a72d78df743fcb57e7c1716848589e571dd35167b957a9b407ca27978ccfb6cb9e0df9c9439b888f352501a00ba32281ed1e0b4193bd606f1d77152e
 SHA512 
b1972f7ce965bfc9377542993c5943ea4868a8ed23a969d4203264746d6bea3a7a65c6379196ece37fd6d68ec7ec80f827bde87d1049284af7082759a124f1d5
@@ -11,7 +11,7 @@ DIST manual-2019.6.pdf 12702376 BLAKE2B 
c350127bc06a9eb3dee73da39037c84daeb89500
 DIST manual-2020.7.pdf 11850780 BLAKE2B 
38594e87993badfbbcf47d6010a7f67d3c3426dab85e1462916b4d62be27b5764953f912cf2b71ee24877e0bfa27b3f74431da2da81b4977d58cb66b2cc795a3
 SHA512 
4f184f2c90e0bac01a48069cc546cd5b04fa5f543f90dd2d68c6d17be278152fd09456b6a6c5c8236f8fb85a174d6ec7a1c7b44d437b4e6fea5d0ada73cec0f6
 DIST manual-2021.7.pdf 12256526 BLAKE2B 
6f298d7dac142f66914bbc2ea7d6ca70c4aeafaf33ccf12336d5cec64b1f1097b5332c767bb411ccef706ec6184479a84bcf59bda21c4249d45d8ce3dea08e79
 SHA512 
197765accb8ab6c5f1cc94b2697ff1817e157d85fa231dfe36a85036076e04da2a8035de66aba4f46c6dd7f553176357b94c92e1da5d1dabc574c627deee5279
 DIST manual-2022.6.pdf 13081140 BLAKE2B 
e7ae3f23ddc076c295be2c464fe2177d6d6848d070ee5eba2b572e996ae08adead898ec6432b123802907f64983aa4d2e17426be8d540c48d12398a479519f9e
 SHA512 
4724888b3c33c4fa4a035d5fb2f8c51496f67e1ee312676510d5ba74bc3cc1571e71e84464585b87ad0133e8e736343ae382bf8f7b556633f86a99560213d271
-DIST manual-2023.3.pdf 13565055 BLAKE2B 
0332b5c4de863e9f33d7ae7404741ee8f7f503ee0d2dc723e9cc42e9fd3fb8fc74313b43589cbfc7127daec24b721ba79a3c53ff509e718992ccbde14889ea2f
 SHA512 
144220f18bfab6fefec738a7af743bd01733a896c853963ce113354da05514941862412786f0e2183de77634b31b334814d42daae87a9009ec028ed87685
+DIST manual-2023.4.pdf 13572503 BLAKE2B 
f9985c6ceed2dd66d49c9e9817651b0250994aacb571a552dde6b82a7c02471409cc34622d216290e8ceb3934cf4f51d98d95e1c1f584d1deb5e64c3e02c

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2024-02-29 Thread Alexey Shvetsov

commit: 947fdb1e06eb1ba7cdc4673cf70f0c6a1692c4bb
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Thu Feb 29 19:44:54 2024 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Feb 29 19:44:54 2024 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=947fdb1e

sci-chemistry/gromacs: drop 2021.6

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/Manifest  |   3 -
 sci-chemistry/gromacs/gromacs-2021.6.ebuild | 352 
 2 files changed, 355 deletions(-)

diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest
index 95187d4a9a54..6a6d847781b0 100644
--- a/sci-chemistry/gromacs/Manifest
+++ b/sci-chemistry/gromacs/Manifest
@@ -1,7 +1,6 @@
 DIST gromacs-2018.8.tar.gz 29913703 BLAKE2B 
8780032305928067fbfe1559efe9eedc4d47e27ab2f6ab54d6dba39edfcbeefbee4673d8910009048a850620b5a08ba8feb622db652c439cfa50a149ec5f0015
 SHA512 
6717895942f2ab7b54019511ed2aebadadde8e96d3c4b7414bb9168ffe418432d2dee330192e199f7b9d2f665c71f5d4f1ef0911aa7243d525a2ca182ef5b122
 DIST gromacs-2019.6.tar.gz 33446147 BLAKE2B 
adc21fb6b841b06d499607f8c0166a673645ef5af0b40bd823d0fff5ea24397e6301c5e1e0070986ae1ce1deba8a42052b66da148b071c1e21f2fe3908fee275
 SHA512 
7c227a9539e5775d5d128ae9e872a24181d79cdcd2852b86453597987e8d7332ecec371da65d089f6e610c54aafbccc8824ce298743383dd6240719ebee692a8
 DIST gromacs-2020.7.tar.gz 29175554 BLAKE2B 
98f1aa415946f8eb113febc81105f0c1b0919b96fc3c55a0ab83bf3950ff509b81eade92e645adb0bc2b407df239e20cf3f19828b6e08616437c8693c1fddcc8
 SHA512 
1d375c44cec38445e56cea252623b5b6c565680268999d4b6c14d6dc38759a27227655b2d29efaab9f9115d3677b446cb555e11cddafa0dc10c4827caaa2477b
-DIST gromacs-2021.6.tar.gz 38012702 BLAKE2B 
023ae37dc53643758afa050fd179cd66f3c6d6266f6afceee5eb35c890a3ae284956f2bc2409156d6e1fa03a7f23f7b04c27e1820547fd5f147b344d94da7d40
 SHA512 
65d7874e5cd838ce4f29d033c66304738ccc30f1987f9f8541725058b2fc4551302a399f6ce773e81ac9485963187c48feaf92c71789f4c345c82bd335f806a7
 DIST gromacs-2021.7.tar.gz 38028032 BLAKE2B 
2dc1b15ca8692ca5cf4ad1c7a266b9e2ced064d34a63cef61fea69e48231dd0310cfd8484d29c56cdb599f795d7655959f40038ac933b46ad2841d57bf2b3646
 SHA512 
ca478533da3bcb377fda30682660db8eb13beef6456fac6013a1a97ec3be60b5594567412e1e2a31392e484f9a40a22da1f12336f4738cf0422ff4f3e8814609
 DIST gromacs-2022.6.tar.gz 40330705 BLAKE2B 
fdafbd5b2a92d6022dec3e79e961fef220f1eba42850916e7cb70ef459a8d9c6ebc8c1bbe3c105f5b23161dd5c552ec00505d7c0036649b782cf52c311498743
 SHA512 
91217394f534ca8f78f73189059712e1c2cd354b658722f23768b12748f7bfaf1a5e95227c5ed1b69c1a9b72c3174e9600a712c157ea2f27156387efb823dd67
 DIST gromacs-2023.3.tar.gz 42071770 BLAKE2B 
dea0f6b0ccd67bfa4fc58c06bd3eda6d17a7f4b1c6746c2743860cf00ba514884a27140b65b7830ca340c233510ace1734ecc09e393be3e9761e31b9e4abfeb6
 SHA512 
016181be78887b0e31bc7fd124ac7c25c923c6bab1ffe43d3b4a744ae68203bb9d9f976c4c81bce344f4ea8e9d610ebd5b631b2202fcd6cfefd8c1ad0ebfe10d
@@ -10,7 +9,6 @@ DIST gromacs-2024.tar.gz 42455653 BLAKE2B 
86446c5e95f9ddaf718126c409389730ee1642
 DIST manual-2018.8.pdf 10025023 BLAKE2B 
afb0a6e6a72d78df743fcb57e7c1716848589e571dd35167b957a9b407ca27978ccfb6cb9e0df9c9439b888f352501a00ba32281ed1e0b4193bd606f1d77152e
 SHA512 
b1972f7ce965bfc9377542993c5943ea4868a8ed23a969d4203264746d6bea3a7a65c6379196ece37fd6d68ec7ec80f827bde87d1049284af7082759a124f1d5
 DIST manual-2019.6.pdf 12702376 BLAKE2B 
c350127bc06a9eb3dee73da39037c84daeb89500e23cb131bd19a150bf60602d4dde7611e0c6f0f344af4093e96a899303dac71b4df56fd0c44c3a48a56606b7
 SHA512 
dfdff67c2c1c9ce1f1c236b7686c5331b0fe86951da6c98eddd6a3e748815e0be0a9653ae4318469fcdd913c4e7c355d64a997cc80b9d9fbe6282ef6d98e61eb
 DIST manual-2020.7.pdf 11850780 BLAKE2B 
38594e87993badfbbcf47d6010a7f67d3c3426dab85e1462916b4d62be27b5764953f912cf2b71ee24877e0bfa27b3f74431da2da81b4977d58cb66b2cc795a3
 SHA512 
4f184f2c90e0bac01a48069cc546cd5b04fa5f543f90dd2d68c6d17be278152fd09456b6a6c5c8236f8fb85a174d6ec7a1c7b44d437b4e6fea5d0ada73cec0f6
-DIST manual-2021.6.pdf 12256595 BLAKE2B 
5d808e38571b38c1f6e0d115f6e604238206cc001f59d05ed855e80c324c0e6fd7767adb723b3d0edd1267ae5973a3b83b76bd04d2dc99769e6440600d8e2146
 SHA512 
64fe56422d7417f6f61b10346c99e24c3f423f0cedc3794e0809250282bc87ef692b47ae6c3f95ad7994aa3860ed82035cbacc76eb78a2f54a29052a05260af2
 DIST manual-2021.7.pdf 12256526 BLAKE2B 
6f298d7dac142f66914bbc2ea7d6ca70c4aeafaf33ccf12336d5cec64b1f1097b5332c767bb411ccef706ec6184479a84bcf59bda21c4249d45d8ce3dea08e79
 SHA512 
197765accb8ab6c5f1cc94b2697ff1817e157d85fa231dfe36a85036076e04da2a8035de66aba4f46c6dd7f553176357b94c92e1da5d1dabc574c627deee5279
 DIST manual-2022.6.pdf 13081140 BLAKE2B 
e7ae3f23ddc076c295be2c464fe2177d6d6848d070ee5eba2b572e996ae08adead898ec6432b123802907f64983aa4d2e17426be8d540c48d12398a479519f9e
 SHA512 
4724888b3c33c4fa4a035d5fb2f8c51496f67e1ee312676510d5ba74bc3cc1571e71e84464585b87ad0133e8e736343ae382bf8f7b556633f86a99560213d271
 DIST manual-2023.3.pdf 1356505

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2024-02-29 Thread Alexey Shvetsov

commit: 6f41d89cd7d9db011c7f63ca92e7468e3a14ec9e
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Thu Feb 29 19:43:41 2024 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Feb 29 19:43:41 2024 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6f41d89c

sci-chemistry/gromacs: drop 2023.1-r1, 2023.2

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/Manifest |   6 -
 sci-chemistry/gromacs/gromacs-2023.1-r1.ebuild | 335 -
 sci-chemistry/gromacs/gromacs-2023.2.ebuild| 335 -
 3 files changed, 676 deletions(-)

diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest
index 719de00e3ba2..6a240bd34e99 100644
--- a/sci-chemistry/gromacs/Manifest
+++ b/sci-chemistry/gromacs/Manifest
@@ -5,8 +5,6 @@ DIST gromacs-2021.6.tar.gz 38012702 BLAKE2B 
023ae37dc53643758afa050fd179cd66f3c6
 DIST gromacs-2021.7.tar.gz 38028032 BLAKE2B 
2dc1b15ca8692ca5cf4ad1c7a266b9e2ced064d34a63cef61fea69e48231dd0310cfd8484d29c56cdb599f795d7655959f40038ac933b46ad2841d57bf2b3646
 SHA512 
ca478533da3bcb377fda30682660db8eb13beef6456fac6013a1a97ec3be60b5594567412e1e2a31392e484f9a40a22da1f12336f4738cf0422ff4f3e8814609
 DIST gromacs-2022.5.tar.gz 40362776 BLAKE2B 
e77c96cd995fb6c8284bcf9728e2f95e265911f643c69d00cc5910c6d22ada41293a1cb74033e708957776551b253453f64dba46497d68b2f73c675e94f30ddd
 SHA512 
79310d6fd39a160e7bbc661a04540c9bcb89f40c133d1031ca16998ef0a67fc4a023f57950b22793f0c91b5fe47fd78cb2e7afedb50fe9251b1c920c9267344d
 DIST gromacs-2022.6.tar.gz 40330705 BLAKE2B 
fdafbd5b2a92d6022dec3e79e961fef220f1eba42850916e7cb70ef459a8d9c6ebc8c1bbe3c105f5b23161dd5c552ec00505d7c0036649b782cf52c311498743
 SHA512 
91217394f534ca8f78f73189059712e1c2cd354b658722f23768b12748f7bfaf1a5e95227c5ed1b69c1a9b72c3174e9600a712c157ea2f27156387efb823dd67
-DIST gromacs-2023.1.tar.gz 41934072 BLAKE2B 
6d04642ba37a8563fafc10e0be83e33aab5ce25ef43ec2c9555e84328096bbe61426558a1433b086028f3c6637a5b3ae82241e67f206c0dd0b5254f5ec27ae4c
 SHA512 
4bddbbc56f26487db9d35f371d65725289d1355dc4c295d32698499e05eb74e31d4db579fc1f665edb55a68b002bddacf37c0f05d3f970bc149990d434b1
-DIST gromacs-2023.2.tar.gz 41930578 BLAKE2B 
ee115ba45711867ced4ad08cede0e87dffd7c4e7a45ff3ee0c06b2f46b0dec838e4b532e092ce3abd993e231ca7d517d9941b371fd6d9d64d581862dc67c449c
 SHA512 
9bc17f310e6be6fd51b7c07bde0b58e8fa15085b2c073eb7bed0db917646586dee5d7cf9b4b178e9b4cedd40d4bcd967edcc4b26debaec6f4ca94399b13b9186
 DIST gromacs-2023.3.tar.gz 42071770 BLAKE2B 
dea0f6b0ccd67bfa4fc58c06bd3eda6d17a7f4b1c6746c2743860cf00ba514884a27140b65b7830ca340c233510ace1734ecc09e393be3e9761e31b9e4abfeb6
 SHA512 
016181be78887b0e31bc7fd124ac7c25c923c6bab1ffe43d3b4a744ae68203bb9d9f976c4c81bce344f4ea8e9d610ebd5b631b2202fcd6cfefd8c1ad0ebfe10d
 DIST gromacs-2024.1.tar.gz 42324773 BLAKE2B 
6600c802c39bf7c36d8e388ced202504dcceb3ec018d5f48af4f55e43dd170157a9b6335ce1b20a73623d05a391787936c2ab6ee48ab031d17078256eb7153c5
 SHA512 
fea88fac28ec142201eec1cea984eabd9db43346254ac555954a13fdbae5a5b00281a17efc8dba8ab0ac42794e3cce41b314c5cb36fb4292a1c6d2668b2ba192
 DIST gromacs-2024.tar.gz 42455653 BLAKE2B 
86446c5e95f9ddaf718126c409389730ee1642f36c3e0d844eb4b3a640c275e7979581365dacb57ac66daec296bbd94be6d5c0376f7255d3d3950f6759f8d69a
 SHA512 
d64bf3cbe579003ce37dfd3d27c68746a04360d9d5491c638f3f2bd9af2c938504b0c9710c62e85225370ddf5418e6ebc2422033e46af5eee6e4aaa53699fed7
@@ -17,8 +15,6 @@ DIST manual-2021.6.pdf 12256595 BLAKE2B 
5d808e38571b38c1f6e0d115f6e604238206cc00
 DIST manual-2021.7.pdf 12256526 BLAKE2B 
6f298d7dac142f66914bbc2ea7d6ca70c4aeafaf33ccf12336d5cec64b1f1097b5332c767bb411ccef706ec6184479a84bcf59bda21c4249d45d8ce3dea08e79
 SHA512 
197765accb8ab6c5f1cc94b2697ff1817e157d85fa231dfe36a85036076e04da2a8035de66aba4f46c6dd7f553176357b94c92e1da5d1dabc574c627deee5279
 DIST manual-2022.5.pdf 13081119 BLAKE2B 
7a0ffd086d98527d42da4a22984d8351ad7861e32951e8b65c88e7d0df1559303750886ae31a7c158b4e22f616f6dd5deed9a63b0ed114bb1e0adfda9350a487
 SHA512 
707869ee6052f1b7f75376b0f78fcc4859035234957cc740bd770ea3bea3a591f7fc1fbc0b8526baab48eebfa506d03927df94ddc9c412c75dc2f2864574dd82
 DIST manual-2022.6.pdf 13081140 BLAKE2B 
e7ae3f23ddc076c295be2c464fe2177d6d6848d070ee5eba2b572e996ae08adead898ec6432b123802907f64983aa4d2e17426be8d540c48d12398a479519f9e
 SHA512 
4724888b3c33c4fa4a035d5fb2f8c51496f67e1ee312676510d5ba74bc3cc1571e71e84464585b87ad0133e8e736343ae382bf8f7b556633f86a99560213d271
-DIST manual-2023.1.pdf 13526498 BLAKE2B 
a9aabcb722954c9c83a8f5945c85e634b0b82ace8b9b077c3f2b9ff432ca71d3e2d5ca2dd52d6ce489d77d3d4ca7b41d75e5566205bb8855caa650fa2722e5ec
 SHA512 
b6ca6c822ac5b3cbe3c84d8fd51d3ed465268c00bb5f96e2afa557d45f9c534b0de278f33a0fdf43080c9c619344b98cd71847e17b297a789eec4c8b42dea7b2
-DIST manual-2023.2.pdf 13547562 BLAKE2B 
17155c82d968003706f974e2fb513dced28987e4630c455674d4088dcb827136e2b7b66836a2bf7f9be472254c11ab4ec98cace1462e85a7a18b0f1eb176078

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2024-02-29 Thread Alexey Shvetsov

commit: 58ab10a00adc19c35f22eee686599099d92a8996
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Thu Feb 29 19:47:37 2024 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Feb 29 19:47:37 2024 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=58ab10a0

sci-chemistry/gromacs: drop 2022.

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/gromacs-2022..ebuild | 333 -
 1 file changed, 333 deletions(-)

diff --git a/sci-chemistry/gromacs/gromacs-2022..ebuild 
b/sci-chemistry/gromacs/gromacs-2022..ebuild
deleted file mode 100644
index 8ebb3ae9a8dd..
--- a/sci-chemistry/gromacs/gromacs-2022..ebuild
+++ /dev/null
@@ -1,333 +0,0 @@
-# Copyright 1999-2024 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-CMAKE_MAKEFILE_GENERATOR="ninja"
-
-PYTHON_COMPAT=( python3_{10..12} )
-
-DISTUTILS_OPTIONAL=1
-DISTUTILS_USE_PEP517=no
-DISTUTILS_SINGLE_IMPL=1
-
-inherit bash-completion-r1 cmake cuda distutils-r1 flag-o-matic 
readme.gentoo-r1 toolchain-funcs xdg-utils
-
-if [[ ${PV} = ** ]]; then
-   EGIT_REPO_URI="
-   https://gitlab.com/gromacs/gromacs.git
-   https://github.com/gromacs/gromacs.git
-   "
-   [[ ${PV} =  ]] && EGIT_BRANCH="master" || 
EGIT_BRANCH="release-${PV:0:4}"
-   inherit git-r3
-else
-   SRC_URI="
-   https://ftp.gromacs.org/gromacs/${P}.tar.gz
-   doc? ( https://ftp.gromacs.org/manual/manual-${PV}.pdf )
-   test? ( 
https://ftp.gromacs.org/regressiontests/regressiontests-${PV}.tar.gz )"
-   # since 2022 arm support was dropped (but not arm64)
-   KEYWORDS="~amd64 -arm ~arm64 ~x86 ~amd64-linux ~x86-linux ~x64-macos"
-fi
-
-ACCE_IUSE="cpu_flags_x86_sse2 cpu_flags_x86_sse4_1 cpu_flags_x86_fma4 
cpu_flags_x86_avx cpu_flags_x86_avx2 cpu_flags_x86_avx512f cpu_flags_arm_neon"
-
-DESCRIPTION="The ultimate molecular dynamics simulation package"
-HOMEPAGE="https://www.gromacs.org/;
-
-# see COPYING for details
-# https://repo.or.cz/w/gromacs.git/blob/HEAD:/COPYING
-#base,vmd plugins, fftpack from numpy,  blas/lapck from netlib,
memtestG80 library,  mpi_thread lib
-LICENSE="LGPL-2.1 UoI-NCSA !mkl? ( !fftw? ( BSD ) !blas? ( BSD ) !lapack? ( 
BSD ) ) cuda? ( LGPL-3 ) threads? ( BSD )"
-SLOT="0/${PV}"
-IUSE="blas clang clang-cuda cuda  +custom-cflags +doc build-manual 
double-precision +fftw +gmxapi +gmxapi-legacy +hwloc lapack mkl mpi +offensive 
opencl openmp +python +single-precision test +threads +tng ${ACCE_IUSE}"
-
-CDEPEND="
-   blas? ( virtual/blas )
-   cuda? ( >=dev-util/nvidia-cuda-toolkit-11:=[profiler] )
-   opencl? ( virtual/opencl )
-   fftw? ( sci-libs/fftw:3.0= )
-   hwloc? ( sys-apps/hwloc:= )
-   lapack? ( virtual/lapack )
-   mkl? ( sci-libs/mkl )
-   mpi? ( virtual/mpi[cxx] )
-   sci-libs/lmfit:=
-   >=dev-cpp/muParser-2.3:=
-   ${PYTHON_DEPS}
-   "
-BDEPEND="${CDEPEND}
-   virtual/pkgconfig
-   clang? ( >=sys-devel/clang-6:* )
-   build-manual? (
-   app-text/doxygen
-   $(python_gen_cond_dep '
-   dev-python/sphinx[${PYTHON_USEDEP}]
-   ')
-   media-gfx/mscgen
-   media-gfx/graphviz
-   dev-texlive/texlive-latex
-   dev-texlive/texlive-latexextra
-   media-gfx/imagemagick
-   )"
-RDEPEND="${CDEPEND}
-   https://gitlab.com/gromacs/gromacs-regressiontests.git; \
-   EGIT_BRANCH="${EGIT_BRANCH}" \
-   EGIT_CHECKOUT_DIR="${WORKDIR}/regressiontests"\
-   git-r3_src_unpack
-   fi
-   fi
-}
-
-src_prepare() {
-   #notes/todos
-   # -on apple: there is framework support
-
-   xdg_environment_reset #591952
-
-   # we can use clang as default
-   if use clang && ! tc-is-clang ; then
-   export CC=${CHOST}-clang
-   export CXX=${CHOST}-clang++
-   else
-   tc-export CXX CC
-   fi
-   # clang-cuda need to filter mfpmath
-   if use clang-cuda ; then
-   filter-mfpmath sse
-   filter-mfpmath i386
-   fi
-
-   cmake_src_prepare
-
-   use cuda && cuda_src_prepare
-
-   GMX_DIRS=""
-   use single-precision && GMX_DIRS+=" float"
-   use double-precision && GMX_DIRS+=" double"
-
-   if use test; then
-   for x in ${GMX_DIRS}; do
-   mkdir -p "${WORKDIR}/${P}_${x}" || die
-   cp -al "${WORKDIR}/regressiontests"* 
"${WORK

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2024-02-29 Thread Alexey Shvetsov

commit: e3b4663c9633b9293415c05486cbc7eaa7f63e7d
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Thu Feb 29 19:44:21 2024 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Feb 29 19:44:21 2024 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e3b4663c

sci-chemistry/gromacs: drop 2022.5-r1

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/Manifest |   3 -
 sci-chemistry/gromacs/gromacs-2022.5-r1.ebuild | 333 -
 2 files changed, 336 deletions(-)

diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest
index 6a240bd34e99..95187d4a9a54 100644
--- a/sci-chemistry/gromacs/Manifest
+++ b/sci-chemistry/gromacs/Manifest
@@ -3,7 +3,6 @@ DIST gromacs-2019.6.tar.gz 33446147 BLAKE2B 
adc21fb6b841b06d499607f8c0166a673645
 DIST gromacs-2020.7.tar.gz 29175554 BLAKE2B 
98f1aa415946f8eb113febc81105f0c1b0919b96fc3c55a0ab83bf3950ff509b81eade92e645adb0bc2b407df239e20cf3f19828b6e08616437c8693c1fddcc8
 SHA512 
1d375c44cec38445e56cea252623b5b6c565680268999d4b6c14d6dc38759a27227655b2d29efaab9f9115d3677b446cb555e11cddafa0dc10c4827caaa2477b
 DIST gromacs-2021.6.tar.gz 38012702 BLAKE2B 
023ae37dc53643758afa050fd179cd66f3c6d6266f6afceee5eb35c890a3ae284956f2bc2409156d6e1fa03a7f23f7b04c27e1820547fd5f147b344d94da7d40
 SHA512 
65d7874e5cd838ce4f29d033c66304738ccc30f1987f9f8541725058b2fc4551302a399f6ce773e81ac9485963187c48feaf92c71789f4c345c82bd335f806a7
 DIST gromacs-2021.7.tar.gz 38028032 BLAKE2B 
2dc1b15ca8692ca5cf4ad1c7a266b9e2ced064d34a63cef61fea69e48231dd0310cfd8484d29c56cdb599f795d7655959f40038ac933b46ad2841d57bf2b3646
 SHA512 
ca478533da3bcb377fda30682660db8eb13beef6456fac6013a1a97ec3be60b5594567412e1e2a31392e484f9a40a22da1f12336f4738cf0422ff4f3e8814609
-DIST gromacs-2022.5.tar.gz 40362776 BLAKE2B 
e77c96cd995fb6c8284bcf9728e2f95e265911f643c69d00cc5910c6d22ada41293a1cb74033e708957776551b253453f64dba46497d68b2f73c675e94f30ddd
 SHA512 
79310d6fd39a160e7bbc661a04540c9bcb89f40c133d1031ca16998ef0a67fc4a023f57950b22793f0c91b5fe47fd78cb2e7afedb50fe9251b1c920c9267344d
 DIST gromacs-2022.6.tar.gz 40330705 BLAKE2B 
fdafbd5b2a92d6022dec3e79e961fef220f1eba42850916e7cb70ef459a8d9c6ebc8c1bbe3c105f5b23161dd5c552ec00505d7c0036649b782cf52c311498743
 SHA512 
91217394f534ca8f78f73189059712e1c2cd354b658722f23768b12748f7bfaf1a5e95227c5ed1b69c1a9b72c3174e9600a712c157ea2f27156387efb823dd67
 DIST gromacs-2023.3.tar.gz 42071770 BLAKE2B 
dea0f6b0ccd67bfa4fc58c06bd3eda6d17a7f4b1c6746c2743860cf00ba514884a27140b65b7830ca340c233510ace1734ecc09e393be3e9761e31b9e4abfeb6
 SHA512 
016181be78887b0e31bc7fd124ac7c25c923c6bab1ffe43d3b4a744ae68203bb9d9f976c4c81bce344f4ea8e9d610ebd5b631b2202fcd6cfefd8c1ad0ebfe10d
 DIST gromacs-2024.1.tar.gz 42324773 BLAKE2B 
6600c802c39bf7c36d8e388ced202504dcceb3ec018d5f48af4f55e43dd170157a9b6335ce1b20a73623d05a391787936c2ab6ee48ab031d17078256eb7153c5
 SHA512 
fea88fac28ec142201eec1cea984eabd9db43346254ac555954a13fdbae5a5b00281a17efc8dba8ab0ac42794e3cce41b314c5cb36fb4292a1c6d2668b2ba192
@@ -13,7 +12,6 @@ DIST manual-2019.6.pdf 12702376 BLAKE2B 
c350127bc06a9eb3dee73da39037c84daeb89500
 DIST manual-2020.7.pdf 11850780 BLAKE2B 
38594e87993badfbbcf47d6010a7f67d3c3426dab85e1462916b4d62be27b5764953f912cf2b71ee24877e0bfa27b3f74431da2da81b4977d58cb66b2cc795a3
 SHA512 
4f184f2c90e0bac01a48069cc546cd5b04fa5f543f90dd2d68c6d17be278152fd09456b6a6c5c8236f8fb85a174d6ec7a1c7b44d437b4e6fea5d0ada73cec0f6
 DIST manual-2021.6.pdf 12256595 BLAKE2B 
5d808e38571b38c1f6e0d115f6e604238206cc001f59d05ed855e80c324c0e6fd7767adb723b3d0edd1267ae5973a3b83b76bd04d2dc99769e6440600d8e2146
 SHA512 
64fe56422d7417f6f61b10346c99e24c3f423f0cedc3794e0809250282bc87ef692b47ae6c3f95ad7994aa3860ed82035cbacc76eb78a2f54a29052a05260af2
 DIST manual-2021.7.pdf 12256526 BLAKE2B 
6f298d7dac142f66914bbc2ea7d6ca70c4aeafaf33ccf12336d5cec64b1f1097b5332c767bb411ccef706ec6184479a84bcf59bda21c4249d45d8ce3dea08e79
 SHA512 
197765accb8ab6c5f1cc94b2697ff1817e157d85fa231dfe36a85036076e04da2a8035de66aba4f46c6dd7f553176357b94c92e1da5d1dabc574c627deee5279
-DIST manual-2022.5.pdf 13081119 BLAKE2B 
7a0ffd086d98527d42da4a22984d8351ad7861e32951e8b65c88e7d0df1559303750886ae31a7c158b4e22f616f6dd5deed9a63b0ed114bb1e0adfda9350a487
 SHA512 
707869ee6052f1b7f75376b0f78fcc4859035234957cc740bd770ea3bea3a591f7fc1fbc0b8526baab48eebfa506d03927df94ddc9c412c75dc2f2864574dd82
 DIST manual-2022.6.pdf 13081140 BLAKE2B 
e7ae3f23ddc076c295be2c464fe2177d6d6848d070ee5eba2b572e996ae08adead898ec6432b123802907f64983aa4d2e17426be8d540c48d12398a479519f9e
 SHA512 
4724888b3c33c4fa4a035d5fb2f8c51496f67e1ee312676510d5ba74bc3cc1571e71e84464585b87ad0133e8e736343ae382bf8f7b556633f86a99560213d271
 DIST manual-2023.3.pdf 13565055 BLAKE2B 
0332b5c4de863e9f33d7ae7404741ee8f7f503ee0d2dc723e9cc42e9fd3fb8fc74313b43589cbfc7127daec24b721ba79a3c53ff509e718992ccbde14889ea2f
 SHA512 
144220f18bfab6fefec738a7af743bd01733a896c853963ce113354da05514941862412786f0e2183de77634b31b334814d42daae87a9009ec028ed87

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2024-02-29 Thread Alexey Shvetsov

commit: bbf793a8f83fe4273bbb39802d697cb2db33510c
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Thu Feb 29 19:41:27 2024 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Feb 29 19:41:27 2024 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=bbf793a8

sci-chemistry/gromacs: add 2024.1

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/Manifest  |   3 +
 sci-chemistry/gromacs/gromacs-2024.1.ebuild | 335 
 2 files changed, 338 insertions(+)

diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest
index cfcc1c3e8f72..719de00e3ba2 100644
--- a/sci-chemistry/gromacs/Manifest
+++ b/sci-chemistry/gromacs/Manifest
@@ -8,6 +8,7 @@ DIST gromacs-2022.6.tar.gz 40330705 BLAKE2B 
fdafbd5b2a92d6022dec3e79e961fef220f1
 DIST gromacs-2023.1.tar.gz 41934072 BLAKE2B 
6d04642ba37a8563fafc10e0be83e33aab5ce25ef43ec2c9555e84328096bbe61426558a1433b086028f3c6637a5b3ae82241e67f206c0dd0b5254f5ec27ae4c
 SHA512 
4bddbbc56f26487db9d35f371d65725289d1355dc4c295d32698499e05eb74e31d4db579fc1f665edb55a68b002bddacf37c0f05d3f970bc149990d434b1
 DIST gromacs-2023.2.tar.gz 41930578 BLAKE2B 
ee115ba45711867ced4ad08cede0e87dffd7c4e7a45ff3ee0c06b2f46b0dec838e4b532e092ce3abd993e231ca7d517d9941b371fd6d9d64d581862dc67c449c
 SHA512 
9bc17f310e6be6fd51b7c07bde0b58e8fa15085b2c073eb7bed0db917646586dee5d7cf9b4b178e9b4cedd40d4bcd967edcc4b26debaec6f4ca94399b13b9186
 DIST gromacs-2023.3.tar.gz 42071770 BLAKE2B 
dea0f6b0ccd67bfa4fc58c06bd3eda6d17a7f4b1c6746c2743860cf00ba514884a27140b65b7830ca340c233510ace1734ecc09e393be3e9761e31b9e4abfeb6
 SHA512 
016181be78887b0e31bc7fd124ac7c25c923c6bab1ffe43d3b4a744ae68203bb9d9f976c4c81bce344f4ea8e9d610ebd5b631b2202fcd6cfefd8c1ad0ebfe10d
+DIST gromacs-2024.1.tar.gz 42324773 BLAKE2B 
6600c802c39bf7c36d8e388ced202504dcceb3ec018d5f48af4f55e43dd170157a9b6335ce1b20a73623d05a391787936c2ab6ee48ab031d17078256eb7153c5
 SHA512 
fea88fac28ec142201eec1cea984eabd9db43346254ac555954a13fdbae5a5b00281a17efc8dba8ab0ac42794e3cce41b314c5cb36fb4292a1c6d2668b2ba192
 DIST gromacs-2024.tar.gz 42455653 BLAKE2B 
86446c5e95f9ddaf718126c409389730ee1642f36c3e0d844eb4b3a640c275e7979581365dacb57ac66daec296bbd94be6d5c0376f7255d3d3950f6759f8d69a
 SHA512 
d64bf3cbe579003ce37dfd3d27c68746a04360d9d5491c638f3f2bd9af2c938504b0c9710c62e85225370ddf5418e6ebc2422033e46af5eee6e4aaa53699fed7
 DIST manual-2018.8.pdf 10025023 BLAKE2B 
afb0a6e6a72d78df743fcb57e7c1716848589e571dd35167b957a9b407ca27978ccfb6cb9e0df9c9439b888f352501a00ba32281ed1e0b4193bd606f1d77152e
 SHA512 
b1972f7ce965bfc9377542993c5943ea4868a8ed23a969d4203264746d6bea3a7a65c6379196ece37fd6d68ec7ec80f827bde87d1049284af7082759a124f1d5
 DIST manual-2019.6.pdf 12702376 BLAKE2B 
c350127bc06a9eb3dee73da39037c84daeb89500e23cb131bd19a150bf60602d4dde7611e0c6f0f344af4093e96a899303dac71b4df56fd0c44c3a48a56606b7
 SHA512 
dfdff67c2c1c9ce1f1c236b7686c5331b0fe86951da6c98eddd6a3e748815e0be0a9653ae4318469fcdd913c4e7c355d64a997cc80b9d9fbe6282ef6d98e61eb
@@ -19,6 +20,7 @@ DIST manual-2022.6.pdf 13081140 BLAKE2B 
e7ae3f23ddc076c295be2c464fe2177d6d6848d0
 DIST manual-2023.1.pdf 13526498 BLAKE2B 
a9aabcb722954c9c83a8f5945c85e634b0b82ace8b9b077c3f2b9ff432ca71d3e2d5ca2dd52d6ce489d77d3d4ca7b41d75e5566205bb8855caa650fa2722e5ec
 SHA512 
b6ca6c822ac5b3cbe3c84d8fd51d3ed465268c00bb5f96e2afa557d45f9c534b0de278f33a0fdf43080c9c619344b98cd71847e17b297a789eec4c8b42dea7b2
 DIST manual-2023.2.pdf 13547562 BLAKE2B 
17155c82d968003706f974e2fb513dced28987e4630c455674d4088dcb827136e2b7b66836a2bf7f9be472254c11ab4ec98cace1462e85a7a18b0f1eb1760781
 SHA512 
b8026422fb367bf58d6ddb727afe2f1b208c9abb4eb513d85d395a19a82a7fcf362390f4ae5718fa17b0aeb7bf2c90567f40913fdc3cfc51c63d3757ab5a4905
 DIST manual-2023.3.pdf 13565055 BLAKE2B 
0332b5c4de863e9f33d7ae7404741ee8f7f503ee0d2dc723e9cc42e9fd3fb8fc74313b43589cbfc7127daec24b721ba79a3c53ff509e718992ccbde14889ea2f
 SHA512 
144220f18bfab6fefec738a7af743bd01733a896c853963ce113354da05514941862412786f0e2183de77634b31b334814d42daae87a9009ec028ed87685
+DIST manual-2024.1.pdf 13651959 BLAKE2B 
d76e112d3d22e6638e733dec7db713aa65e16099e98935e0bfe8842966a51a04ca370e9afb62ad5b30f3adced1c67574a21445b61f3ce5a753e5d8680f87967e
 SHA512 
3f1aa3433095983cf7ce5c54383bc384d25d9f3b22357e0360639f619c740df37ec0c827ccc9d48b8f93e3877315ee82f740c486b231f777e1be35e44fd823fe
 DIST manual-2024.pdf 13644437 BLAKE2B 
19d547686d5c5be5e1236aba648e8afb174b281802ab76e020466953ab5d2dd98701f21eb4736cb449b61960b5b7aadce6711b2b0309a41dd1997d7383bce09e
 SHA512 
b00048651f1f81f9024ba5c4c02ad66d2b07eb7b816f0489568fb64859cac515b885a5cb4640c8b5bd7c3620655a7ebc5fc2e4e4cbb8e952ffb0c9b5815ae661
 DIST regressiontests-2018.8.tar.gz 67855469 BLAKE2B 
34c9b339f6229f483afbb5192ee6ba8b8f72d5c26907a853af9c53dfece0d88739e48f6b44b78d1c010f988f9385d077285300522164f533a5861e9dda879275
 SHA512 
3642389d27bd1942cd0f091c940ae97b197b94856a387fe581dc516b0d4169480f16551d4ba357f9282b3337d605c286d51dd38112ac87c826dda63490483

[gentoo-commits] repo/gentoo:master commit in: media-libs/kimageannotator/

2024-02-27 Thread Alexey Shvetsov

commit: 1b6122c94ad85633acc517dca5ac1b9759c33f03
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Tue Feb 27 20:15:02 2024 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Tue Feb 27 20:15:02 2024 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1b6122c9

media-libs/kimageannotator: Add missing deps

Bug: https://github.com/ksnip/kImageAnnotator/issues/335
Signed-off-by: Alexey Shvetsov  gentoo.org>

 ...kimageannotator-0.7.0.ebuild => kimageannotator-0.7.0-r1.ebuild} | 6 +-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/media-libs/kimageannotator/kimageannotator-0.7.0.ebuild 
b/media-libs/kimageannotator/kimageannotator-0.7.0-r1.ebuild
similarity index 86%
rename from media-libs/kimageannotator/kimageannotator-0.7.0.ebuild
rename to media-libs/kimageannotator/kimageannotator-0.7.0-r1.ebuild
index 44f907d31853..1093de12ccd1 100644
--- a/media-libs/kimageannotator/kimageannotator-0.7.0.ebuild
+++ b/media-libs/kimageannotator/kimageannotator-0.7.0-r1.ebuild
@@ -3,7 +3,6 @@
 
 EAPI=8
 
-VIRTUALX_REQUIRED="test"
 inherit cmake
 
 MY_PN=kImageAnnotator
@@ -25,8 +24,10 @@ RDEPEND="
dev-qt/qtbase:6[gui,widgets]
dev-qt/qtsvg:6
>=media-libs/kcolorpicker-0.3.0
+   x11-libs/libX11
 "
 DEPEND="${RDEPEND}
+   x11-base/xorg-proto
test? (
dev-cpp/gtest
dev-qt/qtbase:6
@@ -44,6 +45,9 @@ src_configure() {
cmake_src_configure
 }
 
+# one test is failing KeyInputHelperTest
+# upstream bug https://github.com/ksnip/kImageAnnotator/issues/335
+
 src_test() {
local -x QT_QPA_PLATFORM=offscreen
BUILD_DIR="${BUILD_DIR}/tests" cmake_src_test

[gentoo-commits] proj/kde:master commit in: kde-apps/gwenview/

2024-02-24 Thread Alexey Shvetsov

commit: af905492fcde419994f0285a774ed9479b278f63
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Sat Feb 24 11:18:42 2024 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Sat Feb 24 11:18:42 2024 +
URL:https://gitweb.gentoo.org/proj/kde.git/commit/?id=af905492

kde-apps/gwenview: sort deps

Signed-off-by: Alexey Shvetsov  gentoo.org>

 kde-apps/gwenview/gwenview-24.02.0.ebuild   | 5 ++---
 kde-apps/gwenview/gwenview-24.02.49..ebuild | 5 ++---
 kde-apps/gwenview/gwenview-.ebuild  | 5 ++---
 3 files changed, 6 insertions(+), 9 deletions(-)

diff --git a/kde-apps/gwenview/gwenview-24.02.0.ebuild 
b/kde-apps/gwenview/gwenview-24.02.0.ebuild
index 613641e365..ca9a5380c4 100644
--- a/kde-apps/gwenview/gwenview-24.02.0.ebuild
+++ b/kde-apps/gwenview/gwenview-24.02.0.ebuild
@@ -22,7 +22,6 @@ IUSE="activities fits +mpris raw semantic-desktop share X"
 RESTRICT="test"
 
 # slot op: includes qpa/qplatformnativeinterface.h
-# TODO: When Qt6 version available: >=media-libs/kimageannotator-0.5.0, 
media-libs/kcolorpicker
 COMMON_DEPEND="
dev-libs/wayland
>=dev-qt/qtbase-${QTMIN}:6=[gui,widgets]
@@ -46,11 +45,11 @@ COMMON_DEPEND="
>=kde-frameworks/kxmlgui-${KFMIN}:6
>=kde-frameworks/solid-${KFMIN}:6
media-gfx/exiv2:=
+   >=media-libs/kimageannotator-0.7.0
+   >=media-libs/kcolorpicker-0.3.0
media-libs/lcms:2
media-libs/libjpeg-turbo:=
media-libs/libpng:0=
-   >=media-libs/kimageannotator-0.7.0
-   >=media-libs/kcolorpicker-0.3.0
>=media-libs/phonon-4.12.0[qt6]
media-libs/tiff:=
activities? ( kde-plasma/plasma-activities:6 )

diff --git a/kde-apps/gwenview/gwenview-24.02.49..ebuild 
b/kde-apps/gwenview/gwenview-24.02.49..ebuild
index c21d67ba47..c89021abea 100644
--- a/kde-apps/gwenview/gwenview-24.02.49..ebuild
+++ b/kde-apps/gwenview/gwenview-24.02.49..ebuild
@@ -22,7 +22,6 @@ IUSE="activities fits +mpris raw semantic-desktop share X"
 RESTRICT="test"
 
 # slot op: includes qpa/qplatformnativeinterface.h
-# TODO: When Qt6 version available: >=media-libs/kimageannotator-0.5.0, 
media-libs/kcolorpicker
 COMMON_DEPEND="
dev-libs/wayland
>=dev-qt/qtbase-${QTMIN}:6=[gui,widgets]
@@ -46,11 +45,11 @@ COMMON_DEPEND="
>=kde-frameworks/kxmlgui-${KFMIN}:6
>=kde-frameworks/solid-${KFMIN}:6
media-gfx/exiv2:=
+   >=media-libs/kimageannotator-0.7.0
+   >=media-libs/kcolorpicker-0.3.0
media-libs/lcms:2
media-libs/libjpeg-turbo:=
media-libs/libpng:0=
-   >=media-libs/kimageannotator-0.7.0
-   >=media-libs/kcolorpicker-0.3.0
>=media-libs/phonon-4.12.0[qt6]
media-libs/tiff:=
activities? ( kde-plasma/plasma-activities:6 )

diff --git a/kde-apps/gwenview/gwenview-.ebuild 
b/kde-apps/gwenview/gwenview-.ebuild
index c21d67ba47..c89021abea 100644
--- a/kde-apps/gwenview/gwenview-.ebuild
+++ b/kde-apps/gwenview/gwenview-.ebuild
@@ -22,7 +22,6 @@ IUSE="activities fits +mpris raw semantic-desktop share X"
 RESTRICT="test"
 
 # slot op: includes qpa/qplatformnativeinterface.h
-# TODO: When Qt6 version available: >=media-libs/kimageannotator-0.5.0, 
media-libs/kcolorpicker
 COMMON_DEPEND="
dev-libs/wayland
>=dev-qt/qtbase-${QTMIN}:6=[gui,widgets]
@@ -46,11 +45,11 @@ COMMON_DEPEND="
>=kde-frameworks/kxmlgui-${KFMIN}:6
>=kde-frameworks/solid-${KFMIN}:6
media-gfx/exiv2:=
+   >=media-libs/kimageannotator-0.7.0
+   >=media-libs/kcolorpicker-0.3.0
media-libs/lcms:2
media-libs/libjpeg-turbo:=
media-libs/libpng:0=
-   >=media-libs/kimageannotator-0.7.0
-   >=media-libs/kcolorpicker-0.3.0
>=media-libs/phonon-4.12.0[qt6]
media-libs/tiff:=
activities? ( kde-plasma/plasma-activities:6 )

[gentoo-commits] proj/kde:master commit in: media-libs/kcolorpicker/, media-libs/kimageannotator/

2024-02-24 Thread Alexey Shvetsov

commit: d80c0b41990dff3db14d17107a8e7fd8aefd8996
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Sat Feb 24 11:16:11 2024 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Sat Feb 24 11:16:11 2024 +
URL:https://gitweb.gentoo.org/proj/kde.git/commit/?id=d80c0b41

media-libs/*: moved to tree

Signed-off-by: Alexey Shvetsov  gentoo.org>

 media-libs/kcolorpicker/kcolorpicker-0.3.0.ebuild  | 40 --
 media-libs/kcolorpicker/metadata.xml   | 11 -
 .../kimageannotator/kimageannotator-0.7.0.ebuild   | 47 --
 media-libs/kimageannotator/metadata.xml| 11 -
 4 files changed, 109 deletions(-)

diff --git a/media-libs/kcolorpicker/kcolorpicker-0.3.0.ebuild 
b/media-libs/kcolorpicker/kcolorpicker-0.3.0.ebuild
deleted file mode 100644
index c17d7e03ba..00
--- a/media-libs/kcolorpicker/kcolorpicker-0.3.0.ebuild
+++ /dev/null
@@ -1,40 +0,0 @@
-# Copyright 2020-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-VIRTUALX_REQUIRED="test"
-inherit cmake virtualx
-
-MY_PN=kColorPicker
-MY_P="${MY_PN}-${PV}"
-
-DESCRIPTION="Qt based color picker with popup menu"
-HOMEPAGE="https://github.com/ksnip/kColorPicker;
-SRC_URI="https://github.com/ksnip/${MY_PN}/archive/v${PV}.tar.gz -> 
${MY_P}.tar.gz"
-
-LICENSE="LGPL-3+"
-SLOT="0"
-KEYWORDS="~amd64 ~arm64 ~loong ~ppc64 ~riscv ~x86"
-IUSE="test"
-
-RDEPEND="
-   dev-qt/qtbase:6[gui,widgets]
-"
-DEPEND="${RDEPEND}
-   test? ( dev-qt/qtbase:6[test] )
-"
-
-S="${WORKDIR}/${MY_P}"
-
-src_configure() {
-   local mycmakeargs=(
-   -DBUILD_TESTS=$(usex test)
-   -DBUILD_WITH_QT6=ON
-   )
-   cmake_src_configure
-}
-
-src_test() {
-   virtx cmake_src_test
-}

diff --git a/media-libs/kcolorpicker/metadata.xml 
b/media-libs/kcolorpicker/metadata.xml
deleted file mode 100644
index 37a4113b8c..00
--- a/media-libs/kcolorpicker/metadata.xml
+++ /dev/null
@@ -1,11 +0,0 @@
-
-https://www.gentoo.org/dtd/metadata.dtd;>
-
-   
-   k...@gentoo.org
-   Gentoo KDE Project
-   
-   
-   ksnip/kColorPicker
-   
-

diff --git a/media-libs/kimageannotator/kimageannotator-0.7.0.ebuild 
b/media-libs/kimageannotator/kimageannotator-0.7.0.ebuild
deleted file mode 100644
index 75ecf9d3a4..00
--- a/media-libs/kimageannotator/kimageannotator-0.7.0.ebuild
+++ /dev/null
@@ -1,47 +0,0 @@
-# Copyright 2020-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-VIRTUALX_REQUIRED="test"
-inherit cmake virtualx
-
-MY_PN=kImageAnnotator
-MY_P="${MY_PN}-${PV}"
-
-DESCRIPTION="Tool for annotating images"
-HOMEPAGE="https://github.com/ksnip/kImageAnnotator;
-SRC_URI="https://github.com/ksnip/${MY_PN}/archive/v${PV}.tar.gz -> 
${MY_P}.tar.gz"
-S="${WORKDIR}/${MY_P}"
-
-LICENSE="LGPL-3+"
-SLOT="0"
-KEYWORDS="~amd64 ~arm64 ~loong ~ppc64 ~riscv ~x86"
-IUSE="test"
-
-RDEPEND="
-   dev-qt/qtbase:6[gui,widgets]
-   dev-qt/qtsvg:6
-   >=media-libs/kcolorpicker-0.3.0
-"
-DEPEND="${RDEPEND}
-   test? (
-   dev-qt/qtbase:6[test]
-   dev-cpp/gtest
-   )
-"
-BDEPEND="
-   dev-qt/qttools:6[linguist]
-"
-
-src_configure() {
-   local mycmakeargs=(
-   -DBUILD_TESTS=$(usex test)
-   -DBUILD_WITH_QT6=ON
-   )
-   cmake_src_configure
-}
-
-src_test() {
-   BUILD_DIR="${BUILD_DIR}/tests" virtx cmake_src_test
-}

diff --git a/media-libs/kimageannotator/metadata.xml 
b/media-libs/kimageannotator/metadata.xml
deleted file mode 100644
index 722b028b1f..00
--- a/media-libs/kimageannotator/metadata.xml
+++ /dev/null
@@ -1,11 +0,0 @@
-
-https://www.gentoo.org/dtd/metadata.dtd;>
-
-   
-   k...@gentoo.org
-   Gentoo KDE Project
-   
-   
-   ksnip/kImageAnnotator
-   
-

[gentoo-commits] repo/gentoo:master commit in: media-libs/kimageannotator/files/, media-libs/kimageannotator/

2024-02-24 Thread Alexey Shvetsov

commit: 3521346f75b35bd657d18ec59049813314752ad4
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Sat Feb 24 11:09:58 2024 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Sat Feb 24 11:13:33 2024 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3521346f

media-libs/kimageannotator: Version bump and restrict deps

Signed-off-by: Alexey Shvetsov  gentoo.org>

 media-libs/kimageannotator/Manifest|   1 +
 .../kimageannotator-0.7.0-fix-qt6-tests.patch  | 117 +
 .../kimageannotator/kimageannotator-0.6.0.ebuild   |   3 +-
 .../kimageannotator/kimageannotator-0.6.1.ebuild   |   3 +-
 ...r-0.6.1.ebuild => kimageannotator-0.7.0.ebuild} |  29 ++---
 media-libs/kimageannotator/metadata.xml|   7 ++
 6 files changed, 145 insertions(+), 15 deletions(-)

diff --git a/media-libs/kimageannotator/Manifest 
b/media-libs/kimageannotator/Manifest
index 2abeecfad611..bcf546abf17a 100644
--- a/media-libs/kimageannotator/Manifest
+++ b/media-libs/kimageannotator/Manifest
@@ -1,2 +1,3 @@
 DIST kImageAnnotator-0.6.0.tar.gz 257662 BLAKE2B 
3736d0e862f1d3f3f9728e4d4d611c7e406d40fe022a2441b1a80355997d86a194064ecade63b7657d3cbf1f63364b8b74654d9c92d809ac056b7dc999d97415
 SHA512 
5782acd552af2297813164c0612810ec0d2127c174773040d99ec9d281f3575832b06667736a5521e88fa2d57ea6410e42a5d95232cb2dbdd9608917e5d6e896
 DIST kImageAnnotator-0.6.1.tar.gz 264176 BLAKE2B 
dfbfb50d2187572b0e68f1a699e91391fbb1fbc36f9b44f3ad97cab9e4ab3329e20ae4abe7fc68f1cf8dfd1960f2b03b3d6a6c949b4a7102b0c22d35690b8e05
 SHA512 
92ec8ff06011856e98e5624f9c3d98227e10991385fa41e110187db9b5d7b8de075199844e886618668040b69f8910be51b8cf55a009fac8887954c5b7695b25
+DIST kImageAnnotator-0.7.0.tar.gz 266849 BLAKE2B 
eda6428caf37dedc24f613e513c970a94a0b25f37ea62953a9cf4b7afe3abd01b487f5a19f1c7baa34d9f31dfa0aaefed192f23ca2e3e1f06964cc6e4a951888
 SHA512 
e2a6d3014476fcb6e8838c0d0aa72e4bf5ccf6fbe1314ee6c1f44bb4299c6bd1b04be305e1039628f55e5e5e1626899329d9b93314c1f1fd2870bafaf0a8e2ff

diff --git 
a/media-libs/kimageannotator/files/kimageannotator-0.7.0-fix-qt6-tests.patch 
b/media-libs/kimageannotator/files/kimageannotator-0.7.0-fix-qt6-tests.patch
new file mode 100644
index ..985bf108c1a3
--- /dev/null
+++ b/media-libs/kimageannotator/files/kimageannotator-0.7.0-fix-qt6-tests.patch
@@ -0,0 +1,117 @@
+From dbcb28f4fe8deb5ce83d45907f97516eade74420 Mon Sep 17 00:00:00 2001
+From: Heiko Becker 
+Date: Tue, 6 Feb 2024 18:47:20 +
+Subject: [PATCH] Fix building the tests with Qt 6 (#332)
+
+* Remove usage of QTEST_ADD_GPU_BLACKLIST_SUPPORT_DEFS
+
+According to commit 641eb4a96552615d898512723e2093abcaf7fbc1 in
+qtbase.git they serve no purpose anymore and were subsequently removed
+in Qt6.
+
+Closes #331.
+
+* Replace QLatin1Literal with QStringLiteral
+
+The former is deprecated and was removed from Qt6.
+---
+ .../annotations/core/AnnotationPropertiesFactoryTest.cpp  | 2 +-
+ tests/gui/annotator/tabs/AnnotationTabContextMenuTest.cpp | 6 +++---
+ tests/utils/TestRunner.h  | 8 
+ tests/widgets/settingsPicker/StickerPickerTest.cpp| 4 ++--
+ 4 files changed, 6 insertions(+), 14 deletions(-)
+
+diff --git a/tests/annotations/core/AnnotationPropertiesFactoryTest.cpp 
b/tests/annotations/core/AnnotationPropertiesFactoryTest.cpp
+index 77b43057..ce5047ef 100644
+--- a/tests/annotations/core/AnnotationPropertiesFactoryTest.cpp
 b/tests/annotations/core/AnnotationPropertiesFactoryTest.cpp
+@@ -199,7 +199,7 @@ void 
AnnotationPropertiesFactoryTest::TestCreate_Should_SetToolFontBasedOnSettin
+ void 
AnnotationPropertiesFactoryTest::TestCreate_Should_StickerPathBasedOnSettings()
+ {
+   auto tool = Tools::Sticker;
+-  auto path = QLatin1Literal("/my/path/to/sticker");
++  auto path = QStringLiteral("/my/path/to/sticker");
+   MockDefaultParameters parameters;
+   auto settingsProvider = new MockSettingsProvider();
+   settingsProvider->setSticker(path);
+diff --git a/tests/gui/annotator/tabs/AnnotationTabContextMenuTest.cpp 
b/tests/gui/annotator/tabs/AnnotationTabContextMenuTest.cpp
+index 0c4904de..a5c86d7f 100644
+--- a/tests/gui/annotator/tabs/AnnotationTabContextMenuTest.cpp
 b/tests/gui/annotator/tabs/AnnotationTabContextMenuTest.cpp
+@@ -40,8 +40,8 @@ void 
AnnotationTabContextMenuTest::TestCustomActionTriggered_Should_CallInnerAct
+ void 
AnnotationTabContextMenuTest::TestAddCustomActions_Should_SetTextIconAndToolTipInOuterAction()
 
+ {
+ QAction customAction;
+-customAction.setText(QLatin1Literal("LaLa"));
+-customAction.setToolTip(QLatin1Literal("Hello Hello"));
++customAction.setText(QStringLiteral("LaLa"));
++customAction.setToolTip(QStringLiteral("Hello Hello"));
+ customAction.setIcon(QIcon());
+ QWidget parent;
+ AnnotationTabContextMenu menu();
+@@ -68,4 +68,4 @@ void 
AnnotationTabCo

[gentoo-commits] repo/gentoo:master commit in: kde-apps/gwenview/

2024-02-24 Thread Alexey Shvetsov

commit: 9b16675c6941c2306e06be0aeb4e696fde560980
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Sat Feb 24 11:13:16 2024 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Sat Feb 24 11:13:33 2024 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=9b16675c

kde-apps/gwenview: Restrict deps

Signed-off-by: Alexey Shvetsov  gentoo.org>

 kde-apps/gwenview/gwenview-23.08.4.ebuild | 4 +++-
 kde-apps/gwenview/gwenview-23.08.5.ebuild | 4 +++-
 2 files changed, 6 insertions(+), 2 deletions(-)

diff --git a/kde-apps/gwenview/gwenview-23.08.4.ebuild 
b/kde-apps/gwenview/gwenview-23.08.4.ebuild
index 679c54c8d039..496e5bb95e14 100644
--- a/kde-apps/gwenview/gwenview-23.08.4.ebuild
+++ b/kde-apps/gwenview/gwenview-23.08.4.ebuild
@@ -47,8 +47,10 @@ COMMON_DEPEND="
>=kde-frameworks/kxmlgui-${KFMIN}:5
>=kde-frameworks/solid-${KFMIN}:5
media-gfx/exiv2:=
-   media-libs/kcolorpicker
+   >=media-libs/kcolorpicker-0.2.0
+   =media-libs/kimageannotator-0.5.0
+

[gentoo-commits] repo/gentoo:master commit in: media-libs/kcolorpicker/

2024-02-24 Thread Alexey Shvetsov

commit: a348750f984298be2189227a2958ac19e925247d
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Sat Feb 24 11:04:04 2024 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Sat Feb 24 11:13:33 2024 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a348750f

media-libs/kcolorpicker: add 0.3.0

Signed-off-by: Alexey Shvetsov  gentoo.org>

 media-libs/kcolorpicker/Manifest  |  1 +
 media-libs/kcolorpicker/kcolorpicker-0.3.0.ebuild | 40 +++
 media-libs/kcolorpicker/metadata.xml  |  7 
 3 files changed, 48 insertions(+)

diff --git a/media-libs/kcolorpicker/Manifest b/media-libs/kcolorpicker/Manifest
index 274afcdb904f..f57a68494be2 100644
--- a/media-libs/kcolorpicker/Manifest
+++ b/media-libs/kcolorpicker/Manifest
@@ -1 +1,2 @@
 DIST kColorPicker-0.2.0.tar.gz 12735 BLAKE2B 
39b0c80ec5b498800dd251901b0bd57c839693f071185afacefa8d5a715ff18f2297c50486d98871471c40e0904a07ff40198b548d9368937b120a1eef07929f
 SHA512 
44f9f317ebe5dd3131a9e44071f9f5b397b0d5cceece566f3ecf19932c8e36dafe1a434e623239421bead9413f0859bc3380174d7f14843770691e4d15a956eb
+DIST kColorPicker-0.3.0.tar.gz 12998 BLAKE2B 
18c8f36b3efe1fa3c4ae9fb0e9d7497393561d66287e7ce6b5139e0182ddc69866685a85f4794afb7c861fcb824bfebb4f3c4badf148b4c8aa8b88b7b3483db2
 SHA512 
9f370ad8de0f23116f513e14ca22cb368cb5eaea53484388ca5ca0b7abc81d5071379cb84f8128f806c9ffa051ad29a95e42d4c1d30ba93034c0ae9fd785bb8c

diff --git a/media-libs/kcolorpicker/kcolorpicker-0.3.0.ebuild 
b/media-libs/kcolorpicker/kcolorpicker-0.3.0.ebuild
new file mode 100644
index ..7910473385cc
--- /dev/null
+++ b/media-libs/kcolorpicker/kcolorpicker-0.3.0.ebuild
@@ -0,0 +1,40 @@
+# Copyright 2020-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+VIRTUALX_REQUIRED="test"
+inherit cmake virtualx
+
+MY_PN=kColorPicker
+MY_P="${MY_PN}-${PV}"
+
+DESCRIPTION="Qt based color picker with popup menu"
+HOMEPAGE="https://github.com/ksnip/kColorPicker;
+SRC_URI="https://github.com/ksnip/${MY_PN}/archive/v${PV}.tar.gz -> 
${MY_P}.tar.gz"
+
+LICENSE="LGPL-3+"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~loong ~ppc64 ~riscv ~x86"
+IUSE="test"
+
+RDEPEND="
+   dev-qt/qtbase:6[gui,widgets]
+"
+DEPEND="${RDEPEND}
+   test? ( dev-qt/qtbase:6[test] )
+"
+
+S="${WORKDIR}/${MY_P}"
+
+src_configure() {
+   local mycmakeargs=(
+   -DBUILD_TESTS=$(usex test)
+   -DBUILD_WITH_QT6=ON
+   )
+   cmake_src_configure
+}
+
+src_test() {
+   virtx cmake_src_test
+}

diff --git a/media-libs/kcolorpicker/metadata.xml 
b/media-libs/kcolorpicker/metadata.xml
index b9657fa6506a..6714b2f40edc 100644
--- a/media-libs/kcolorpicker/metadata.xml
+++ b/media-libs/kcolorpicker/metadata.xml
@@ -9,8 +9,15 @@
proxy-ma...@gentoo.org
Proxy Maintainers

+   
+   k...@gentoo.org
+   Gentoo KDE Project
+   
QToolButton with color popup menu with lets 
you
select a color. The popup features a color dialog button which 
can be
used to add custom colors to the popup menu.

+   
+   ksnip/kColorPicker
+

[gentoo-commits] proj/kde:master commit in: kde-apps/gwenview/

2024-02-24 Thread Alexey Shvetsov

commit: 54d0efc2e8f1ca6be53ddbaaccd40fa8846eb727
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Sat Feb 24 08:49:29 2024 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Sat Feb 24 08:49:29 2024 +
URL:https://gitweb.gentoo.org/proj/kde.git/commit/?id=54d0efc2

kde-apps/gwenview: Add required dep kimageannotator

Signed-off-by: Alexey Shvetsov  gentoo.org>

 kde-apps/gwenview/gwenview-24.02.0.ebuild   | 2 ++
 kde-apps/gwenview/gwenview-24.02.49..ebuild | 2 ++
 kde-apps/gwenview/gwenview-.ebuild  | 2 ++
 3 files changed, 6 insertions(+)

diff --git a/kde-apps/gwenview/gwenview-24.02.0.ebuild 
b/kde-apps/gwenview/gwenview-24.02.0.ebuild
index 6504b5e1f9..613641e365 100644
--- a/kde-apps/gwenview/gwenview-24.02.0.ebuild
+++ b/kde-apps/gwenview/gwenview-24.02.0.ebuild
@@ -49,6 +49,8 @@ COMMON_DEPEND="
media-libs/lcms:2
media-libs/libjpeg-turbo:=
media-libs/libpng:0=
+   >=media-libs/kimageannotator-0.7.0
+   >=media-libs/kcolorpicker-0.3.0
>=media-libs/phonon-4.12.0[qt6]
media-libs/tiff:=
activities? ( kde-plasma/plasma-activities:6 )

diff --git a/kde-apps/gwenview/gwenview-24.02.49..ebuild 
b/kde-apps/gwenview/gwenview-24.02.49..ebuild
index 9d9d7a583b..c21d67ba47 100644
--- a/kde-apps/gwenview/gwenview-24.02.49..ebuild
+++ b/kde-apps/gwenview/gwenview-24.02.49..ebuild
@@ -49,6 +49,8 @@ COMMON_DEPEND="
media-libs/lcms:2
media-libs/libjpeg-turbo:=
media-libs/libpng:0=
+   >=media-libs/kimageannotator-0.7.0
+   >=media-libs/kcolorpicker-0.3.0
>=media-libs/phonon-4.12.0[qt6]
media-libs/tiff:=
activities? ( kde-plasma/plasma-activities:6 )

diff --git a/kde-apps/gwenview/gwenview-.ebuild 
b/kde-apps/gwenview/gwenview-.ebuild
index 9d9d7a583b..c21d67ba47 100644
--- a/kde-apps/gwenview/gwenview-.ebuild
+++ b/kde-apps/gwenview/gwenview-.ebuild
@@ -49,6 +49,8 @@ COMMON_DEPEND="
media-libs/lcms:2
media-libs/libjpeg-turbo:=
media-libs/libpng:0=
+   >=media-libs/kimageannotator-0.7.0
+   >=media-libs/kcolorpicker-0.3.0
>=media-libs/phonon-4.12.0[qt6]
media-libs/tiff:=
activities? ( kde-plasma/plasma-activities:6 )

[gentoo-commits] proj/kde:master commit in: media-libs/kcolorpicker/

2024-02-24 Thread Alexey Shvetsov

commit: 09c7a4f75282b7783b53c22af2385598be354ea3
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Sat Feb 24 08:45:19 2024 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Sat Feb 24 08:45:19 2024 +
URL:https://gitweb.gentoo.org/proj/kde.git/commit/?id=09c7a4f7

media-libs/kcolorpicker: new package, add 0.3.0

Signed-off-by: Alexey Shvetsov  gentoo.org>

 media-libs/kcolorpicker/kcolorpicker-0.3.0.ebuild | 40 +++
 media-libs/kcolorpicker/metadata.xml  | 11 +++
 2 files changed, 51 insertions(+)

diff --git a/media-libs/kcolorpicker/kcolorpicker-0.3.0.ebuild 
b/media-libs/kcolorpicker/kcolorpicker-0.3.0.ebuild
new file mode 100644
index 00..c17d7e03ba
--- /dev/null
+++ b/media-libs/kcolorpicker/kcolorpicker-0.3.0.ebuild
@@ -0,0 +1,40 @@
+# Copyright 2020-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+VIRTUALX_REQUIRED="test"
+inherit cmake virtualx
+
+MY_PN=kColorPicker
+MY_P="${MY_PN}-${PV}"
+
+DESCRIPTION="Qt based color picker with popup menu"
+HOMEPAGE="https://github.com/ksnip/kColorPicker;
+SRC_URI="https://github.com/ksnip/${MY_PN}/archive/v${PV}.tar.gz -> 
${MY_P}.tar.gz"
+
+LICENSE="LGPL-3+"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~loong ~ppc64 ~riscv ~x86"
+IUSE="test"
+
+RDEPEND="
+   dev-qt/qtbase:6[gui,widgets]
+"
+DEPEND="${RDEPEND}
+   test? ( dev-qt/qtbase:6[test] )
+"
+
+S="${WORKDIR}/${MY_P}"
+
+src_configure() {
+   local mycmakeargs=(
+   -DBUILD_TESTS=$(usex test)
+   -DBUILD_WITH_QT6=ON
+   )
+   cmake_src_configure
+}
+
+src_test() {
+   virtx cmake_src_test
+}

diff --git a/media-libs/kcolorpicker/metadata.xml 
b/media-libs/kcolorpicker/metadata.xml
new file mode 100644
index 00..37a4113b8c
--- /dev/null
+++ b/media-libs/kcolorpicker/metadata.xml
@@ -0,0 +1,11 @@
+
+https://www.gentoo.org/dtd/metadata.dtd;>
+
+   
+   k...@gentoo.org
+   Gentoo KDE Project
+   
+   
+   ksnip/kColorPicker
+   
+

[gentoo-commits] proj/kde:master commit in: media-libs/kimageannotator/

2024-02-24 Thread Alexey Shvetsov

commit: 586de8dc601d1bdde441e33c22a10637605758ed
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Sat Feb 24 08:47:42 2024 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Sat Feb 24 08:47:42 2024 +
URL:https://gitweb.gentoo.org/proj/kde.git/commit/?id=586de8dc

media-libs/kimageannotator: new package, add 0.7.0

Signed-off-by: Alexey Shvetsov  gentoo.org>

 .../kimageannotator/kimageannotator-0.7.0.ebuild   | 47 ++
 media-libs/kimageannotator/metadata.xml| 11 +
 2 files changed, 58 insertions(+)

diff --git a/media-libs/kimageannotator/kimageannotator-0.7.0.ebuild 
b/media-libs/kimageannotator/kimageannotator-0.7.0.ebuild
new file mode 100644
index 00..75ecf9d3a4
--- /dev/null
+++ b/media-libs/kimageannotator/kimageannotator-0.7.0.ebuild
@@ -0,0 +1,47 @@
+# Copyright 2020-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+VIRTUALX_REQUIRED="test"
+inherit cmake virtualx
+
+MY_PN=kImageAnnotator
+MY_P="${MY_PN}-${PV}"
+
+DESCRIPTION="Tool for annotating images"
+HOMEPAGE="https://github.com/ksnip/kImageAnnotator;
+SRC_URI="https://github.com/ksnip/${MY_PN}/archive/v${PV}.tar.gz -> 
${MY_P}.tar.gz"
+S="${WORKDIR}/${MY_P}"
+
+LICENSE="LGPL-3+"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~loong ~ppc64 ~riscv ~x86"
+IUSE="test"
+
+RDEPEND="
+   dev-qt/qtbase:6[gui,widgets]
+   dev-qt/qtsvg:6
+   >=media-libs/kcolorpicker-0.3.0
+"
+DEPEND="${RDEPEND}
+   test? (
+   dev-qt/qtbase:6[test]
+   dev-cpp/gtest
+   )
+"
+BDEPEND="
+   dev-qt/qttools:6[linguist]
+"
+
+src_configure() {
+   local mycmakeargs=(
+   -DBUILD_TESTS=$(usex test)
+   -DBUILD_WITH_QT6=ON
+   )
+   cmake_src_configure
+}
+
+src_test() {
+   BUILD_DIR="${BUILD_DIR}/tests" virtx cmake_src_test
+}

diff --git a/media-libs/kimageannotator/metadata.xml 
b/media-libs/kimageannotator/metadata.xml
new file mode 100644
index 00..722b028b1f
--- /dev/null
+++ b/media-libs/kimageannotator/metadata.xml
@@ -0,0 +1,11 @@
+
+https://www.gentoo.org/dtd/metadata.dtd;>
+
+   
+   k...@gentoo.org
+   Gentoo KDE Project
+   
+   
+   ksnip/kImageAnnotator
+   
+

[gentoo-commits] repo/gentoo:master commit in: /

2024-02-17 Thread Alexey Shvetsov

commit: 64f0396fbb2a5bb39a6f558b79586ee090fbfaf7
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Sat Feb 17 11:05:07 2024 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Sat Feb 17 11:05:07 2024 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=64f0396f

.mailmap: add my emails

Signed-off-by: Alexey Shvetsov  gentoo.org>

 .mailmap | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.mailmap b/.mailmap
index ad6d04a44462..8b55e37bc5e2 100644
--- a/.mailmap
+++ b/.mailmap
@@ -2,6 +2,7 @@
 # before joining and after retiring, as well as the usual uses of .mailmap.
 # See gitmailmap(5) for format details.
 # Please keep this list sorted. Use "LC_ALL=en_US.utf-8 grep -v '^#' .mailmap 
| sort"
+Alexey Shvetsov  
 Andrew Ammerlaan  
 Andrew Ammerlaan  
 Andrew Ammerlaan

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2024-02-01 Thread Alexey Shvetsov

commit: 58401fa12262cbdaa3029d41d18e9615fdedba3f
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Thu Feb  1 13:06:17 2024 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Feb  1 13:06:17 2024 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=58401fa1

sci-chemistry/gromacs: add 2024, drop 2024_rc

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/Manifest  | 6 +++---
 .../gromacs/{gromacs-2024_rc.ebuild => gromacs-2024.ebuild} | 0
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest
index 6a26873979d3..cfcc1c3e8f72 100644
--- a/sci-chemistry/gromacs/Manifest
+++ b/sci-chemistry/gromacs/Manifest
@@ -8,7 +8,7 @@ DIST gromacs-2022.6.tar.gz 40330705 BLAKE2B 
fdafbd5b2a92d6022dec3e79e961fef220f1
 DIST gromacs-2023.1.tar.gz 41934072 BLAKE2B 
6d04642ba37a8563fafc10e0be83e33aab5ce25ef43ec2c9555e84328096bbe61426558a1433b086028f3c6637a5b3ae82241e67f206c0dd0b5254f5ec27ae4c
 SHA512 
4bddbbc56f26487db9d35f371d65725289d1355dc4c295d32698499e05eb74e31d4db579fc1f665edb55a68b002bddacf37c0f05d3f970bc149990d434b1
 DIST gromacs-2023.2.tar.gz 41930578 BLAKE2B 
ee115ba45711867ced4ad08cede0e87dffd7c4e7a45ff3ee0c06b2f46b0dec838e4b532e092ce3abd993e231ca7d517d9941b371fd6d9d64d581862dc67c449c
 SHA512 
9bc17f310e6be6fd51b7c07bde0b58e8fa15085b2c073eb7bed0db917646586dee5d7cf9b4b178e9b4cedd40d4bcd967edcc4b26debaec6f4ca94399b13b9186
 DIST gromacs-2023.3.tar.gz 42071770 BLAKE2B 
dea0f6b0ccd67bfa4fc58c06bd3eda6d17a7f4b1c6746c2743860cf00ba514884a27140b65b7830ca340c233510ace1734ecc09e393be3e9761e31b9e4abfeb6
 SHA512 
016181be78887b0e31bc7fd124ac7c25c923c6bab1ffe43d3b4a744ae68203bb9d9f976c4c81bce344f4ea8e9d610ebd5b631b2202fcd6cfefd8c1ad0ebfe10d
-DIST gromacs-2024-rc.tar.gz 42467347 BLAKE2B 
ee9e8dd15f5fc4df267678689b2ee22beb1de0a16ed3c620063d25b3e9df2295415dccf03e9aac7b7834e0ccca4ca1aa9b6db68aacc63399f947ed6d40b0025d
 SHA512 
fe2de756b5dfa4d64fd974e3ffd1af561edb6102e42f2443fe27d9c06e6c0ed3afcd31c38ecab4de253e531a1d8a546690e2231ba20a5bdd4bc204491dc1b4fc
+DIST gromacs-2024.tar.gz 42455653 BLAKE2B 
86446c5e95f9ddaf718126c409389730ee1642f36c3e0d844eb4b3a640c275e7979581365dacb57ac66daec296bbd94be6d5c0376f7255d3d3950f6759f8d69a
 SHA512 
d64bf3cbe579003ce37dfd3d27c68746a04360d9d5491c638f3f2bd9af2c938504b0c9710c62e85225370ddf5418e6ebc2422033e46af5eee6e4aaa53699fed7
 DIST manual-2018.8.pdf 10025023 BLAKE2B 
afb0a6e6a72d78df743fcb57e7c1716848589e571dd35167b957a9b407ca27978ccfb6cb9e0df9c9439b888f352501a00ba32281ed1e0b4193bd606f1d77152e
 SHA512 
b1972f7ce965bfc9377542993c5943ea4868a8ed23a969d4203264746d6bea3a7a65c6379196ece37fd6d68ec7ec80f827bde87d1049284af7082759a124f1d5
 DIST manual-2019.6.pdf 12702376 BLAKE2B 
c350127bc06a9eb3dee73da39037c84daeb89500e23cb131bd19a150bf60602d4dde7611e0c6f0f344af4093e96a899303dac71b4df56fd0c44c3a48a56606b7
 SHA512 
dfdff67c2c1c9ce1f1c236b7686c5331b0fe86951da6c98eddd6a3e748815e0be0a9653ae4318469fcdd913c4e7c355d64a997cc80b9d9fbe6282ef6d98e61eb
 DIST manual-2020.7.pdf 11850780 BLAKE2B 
38594e87993badfbbcf47d6010a7f67d3c3426dab85e1462916b4d62be27b5764953f912cf2b71ee24877e0bfa27b3f74431da2da81b4977d58cb66b2cc795a3
 SHA512 
4f184f2c90e0bac01a48069cc546cd5b04fa5f543f90dd2d68c6d17be278152fd09456b6a6c5c8236f8fb85a174d6ec7a1c7b44d437b4e6fea5d0ada73cec0f6
@@ -19,7 +19,7 @@ DIST manual-2022.6.pdf 13081140 BLAKE2B 
e7ae3f23ddc076c295be2c464fe2177d6d6848d0
 DIST manual-2023.1.pdf 13526498 BLAKE2B 
a9aabcb722954c9c83a8f5945c85e634b0b82ace8b9b077c3f2b9ff432ca71d3e2d5ca2dd52d6ce489d77d3d4ca7b41d75e5566205bb8855caa650fa2722e5ec
 SHA512 
b6ca6c822ac5b3cbe3c84d8fd51d3ed465268c00bb5f96e2afa557d45f9c534b0de278f33a0fdf43080c9c619344b98cd71847e17b297a789eec4c8b42dea7b2
 DIST manual-2023.2.pdf 13547562 BLAKE2B 
17155c82d968003706f974e2fb513dced28987e4630c455674d4088dcb827136e2b7b66836a2bf7f9be472254c11ab4ec98cace1462e85a7a18b0f1eb1760781
 SHA512 
b8026422fb367bf58d6ddb727afe2f1b208c9abb4eb513d85d395a19a82a7fcf362390f4ae5718fa17b0aeb7bf2c90567f40913fdc3cfc51c63d3757ab5a4905
 DIST manual-2023.3.pdf 13565055 BLAKE2B 
0332b5c4de863e9f33d7ae7404741ee8f7f503ee0d2dc723e9cc42e9fd3fb8fc74313b43589cbfc7127daec24b721ba79a3c53ff509e718992ccbde14889ea2f
 SHA512 
144220f18bfab6fefec738a7af743bd01733a896c853963ce113354da05514941862412786f0e2183de77634b31b334814d42daae87a9009ec028ed87685
-DIST manual-2024-rc.pdf 13645392 BLAKE2B 
06456a805b7e85924c34d6b940d32e6e9eae1a117e50a02cfe2dd909e79968a69a78eca95ec765671ea30cdc74a1c6c9314dfa2cd8da50ef378f6f7c685e068f
 SHA512 
b20eaea8d6fcd260018bbac76c33e4994f85bd470d6c111ced3b32f0ff805834c4c18020adfc643ec1cf7d10172b5a5a5f4ed404b912ddf25646d16f36e21d54
+DIST manual-2024.pdf 13644437 BLAKE2B 
19d547686d5c5be5e1236aba648e8afb174b281802ab76e020466953ab5d2dd98701f21eb4736cb449b61960b5b7aadce6711b2b0309a41dd1997d7383bc

[gentoo-commits] repo/gentoo:master commit in: media-gfx/prusaslicer/

2024-02-01 Thread Alexey Shvetsov

commit: bf0b0fc0730c2da427db8ccb228c5b0aaf9cb78a
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Thu Feb  1 13:00:44 2024 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Feb  1 13:02:16 2024 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=bf0b0fc0

media-gfx/prusaslicer: add 2.7.1

Signed-off-by: Alexey Shvetsov  gentoo.org>

 media-gfx/prusaslicer/Manifest |  1 +
 media-gfx/prusaslicer/prusaslicer-2.7.1.ebuild | 88 ++
 2 files changed, 89 insertions(+)

diff --git a/media-gfx/prusaslicer/Manifest b/media-gfx/prusaslicer/Manifest
index e0b6484d7d81..a55b73005349 100644
--- a/media-gfx/prusaslicer/Manifest
+++ b/media-gfx/prusaslicer/Manifest
@@ -1,3 +1,4 @@
 DIST prusaslicer-2.5.2.tar.gz 49039089 BLAKE2B 
f1489cac7f23977da30da130faab15336c0f31eee8f197804122e46e62e030a17baf97f744019673e3adc9aff7413380f5c0513fa3d9e3044d56c32d4c95e5b8
 SHA512 
7d17ce358f742ef44725b0b4160be3ddc522d2160d0b467589a1def82b2f478108e4934efb80feff043435b69fe7e81f18146277f67ec1819d9a0150fa9942a2
 DIST prusaslicer-2.6.0.tar.gz 56430180 BLAKE2B 
7d6a0344f558d5788676364262f9e2b878a01e199fa8c95cda87c801c84fd02d5fc9df5a16096d36ec2e02ea54c8189165d524d8e7f73f66526fba6e5c60e55b
 SHA512 
c6133f09ccee5c3c6f1e6e3aebfee749fb0138e830d93ed42b19063b89738162095fa7c017695643b736099750bb56d6bd8174f8bf18a6f0703811703bfb508c
 DIST prusaslicer-2.6.1.tar.gz 58479800 BLAKE2B 
d5bfe09a76c5e1e5d3f5fae350db27db61e1f90465db42b5573314c58d77c89d3c04e67b45c449374570b7c1a0ee13bf7984b011f751a71e3b1414759cc921e9
 SHA512 
2b04eeff4feca2afd560b2fb6a5bbdaae6cabed2180d1416f2e4c7c385a50f859ec334c864a737b7c09eb3fd88f80af68655a0ef25ce9216b16549b16b3020b0
+DIST prusaslicer-2.7.1.tar.gz 64975776 BLAKE2B 
7683e2c97458da6b6f2b0e826f538d556f011e4580246277a926df55a71c5a4668089235b8b13379646e1730d301c446cd5d9116e236986cb29bb322390ba94f
 SHA512 
20037164b8a8853e2f30a5ed613e0da1d02d6fa581c21ef67a51e90af3c33a98eb75e0b3a203adfb8ed7bc67f32de7ea598f3f0ab9c68341738db0c1c1974b3d

diff --git a/media-gfx/prusaslicer/prusaslicer-2.7.1.ebuild 
b/media-gfx/prusaslicer/prusaslicer-2.7.1.ebuild
new file mode 100644
index ..2a926a3e0102
--- /dev/null
+++ b/media-gfx/prusaslicer/prusaslicer-2.7.1.ebuild
@@ -0,0 +1,88 @@
+# Copyright 1999-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+WX_GTK_VER="3.2-gtk3"
+MY_PN="PrusaSlicer"
+MY_PV="$(ver_rs 3 -)"
+
+inherit cmake wxwidgets xdg
+
+DESCRIPTION="A mesh slicer to generate G-code for fused-filament-fabrication 
(3D printers)"
+HOMEPAGE="https://www.prusa3d.com/prusaslicer/;
+SRC_URI="https://github.com/prusa3d/PrusaSlicer/archive/refs/tags/version_${MY_PV}.tar.gz
 -> ${P}.tar.gz"
+
+LICENSE="AGPL-3 Boost-1.0 GPL-2 LGPL-3 MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~x86"
+IUSE="test"
+
+RESTRICT="test"
+
+RDEPEND="
+   dev-cpp/eigen:3
+   dev-cpp/tbb:=
+   dev-libs/boost:=[nls]
+   dev-libs/cereal
+   dev-libs/expat
+   dev-libs/glib:2
+   dev-libs/gmp:=
+   dev-libs/mpfr:=
+   media-gfx/openvdb:=
+   media-gfx/libbgcode
+   net-misc/curl[adns]
+   media-libs/glew:0=
+   media-libs/libjpeg-turbo:=
+   media-libs/libpng:0=
+   media-libs/qhull:=
+   sci-libs/libigl
+   sci-libs/nlopt
+   sci-libs/opencascade:=
+   sci-mathematics/cgal:=
+   sys-apps/dbus
+   sys-libs/zlib:=
+   virtual/opengl
+   x11-libs/gtk+:3
+   >=x11-libs/wxGTK-3.2.2.1-r3:${WX_GTK_VER}[X,opengl]
+   media-libs/nanosvg:=
+"
+DEPEND="${RDEPEND}
+   media-libs/qhull[static-libs]
+"
+
+PATCHES=(
+   "${FILESDIR}/${PN}-2.6.0-libexpat-double-definition-fix.patch"
+   "${FILESDIR}/${PN}-2.6.0-dont-force-link-to-wayland-and-x11.patch"
+)
+
+S="${WORKDIR}/${MY_PN}-version_${MY_PV}"
+
+src_prepare() {
+   sed -i -e 
's/PrusaSlicer-${SLIC3R_VERSION}+UNKNOWN/PrusaSlicer-${SLIC3R_VERSION}+Gentoo/g'
 version.inc || die
+
+   sed -i -e 's/find_package(OpenCASCADE 7.6.2 
REQUIRED)/find_package(OpenCASCADE REQUIRED)/g' \
+   src/occt_wrapper/CMakeLists.txt || die
+   cmake_src_prepare
+}
+
+src_configure() {
+   CMAKE_BUILD_TYPE="Release"
+
+   setup-wxwidgets
+
+   local mycmakeargs=(
+   -DOPENVDB_FIND_MODULE_PATH="/usr/$(get_libdir)/cmake/OpenVDB"
+
+   -DSLIC3R_BUILD_TESTS=$(usex test)
+   -DSLIC3R_FHS=ON
+   -DSLIC3R_GTK=3
+   -DSLIC3R_GUI=ON
+   -DSLIC3R_PCH=OFF
+   -DSLIC3R_STATIC=OFF
+   -DSLIC3R_WX_STABLE=ON
+   -Wno-dev
+   )
+
+   cmake_src_configure
+}

[gentoo-commits] repo/gentoo:master commit in: dev-libs/heatshrink/, dev-libs/heatshrink/files/

2024-02-01 Thread Alexey Shvetsov

commit: 5fbfd251026407e1f93c7542e3828bafce981a52
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Thu Feb  1 12:14:01 2024 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Feb  1 13:02:14 2024 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=5fbfd251

dev-libs/heatshrink: new package, add 0.4.1

Signed-off-by: Alexey Shvetsov  gentoo.org>

 dev-libs/heatshrink/Manifest   |   1 +
 .../heatshrink/files/heatshrink-0.4.1-cmake.patch  | 108 +
 dev-libs/heatshrink/heatshrink-0.4.1.ebuild|  16 +++
 dev-libs/heatshrink/metadata.xml   |  16 +++
 4 files changed, 141 insertions(+)

diff --git a/dev-libs/heatshrink/Manifest b/dev-libs/heatshrink/Manifest
new file mode 100644
index ..b2379309357b
--- /dev/null
+++ b/dev-libs/heatshrink/Manifest
@@ -0,0 +1 @@
+DIST heatshrink-0.4.1.tar.gz 36945 BLAKE2B 
526e3f88ddaec8116e5eef1a73a4450454ca808545dfe4a36069be8a0d771ca92c850c51f9b3c3e73f244454ba17d03da8fb0be4849728300c7eb8181e39651e
 SHA512 
bb9610b963da0762b1ac21d0907f3801b525431abff495b66cadc244a2b2b334441de2b14442b722bfeb56cb4459fe4021eae0d0454f9e26a80e6efa11f079d2

diff --git a/dev-libs/heatshrink/files/heatshrink-0.4.1-cmake.patch 
b/dev-libs/heatshrink/files/heatshrink-0.4.1-cmake.patch
new file mode 100644
index ..3230949b84bf
--- /dev/null
+++ b/dev-libs/heatshrink/files/heatshrink-0.4.1-cmake.patch
@@ -0,0 +1,108 @@
+diff -urN heatshrink-0.4.1.orig/CMakeLists.txt heatshrink-0.4.1/CMakeLists.txt
+--- heatshrink-0.4.1.orig/CMakeLists.txt   1970-01-01 03:00:00.0 
+0300
 heatshrink-0.4.1/CMakeLists.txt2024-02-01 15:11:32.356696150 +0300
+@@ -0,0 +1,93 @@
++cmake_minimum_required(VERSION 3.10)
++
++project(heatshrink LANGUAGES C VERSION 0.4.1)
++
++set(CMAKE_C_STANDARD 99)
++set(CMAKE_C_STANDARD_REQUIRED ON)
++set(CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS ON)
++
++add_library(${PROJECT_NAME} heatshrink_decoder.c heatshrink_encoder.c)
++add_library(${PROJECT_NAME}_dynalloc heatshrink_decoder.c 
heatshrink_encoder.c)
++
++find_library(MATH_LIBRARY m) # Business as usual
++if(MATH_LIBRARY)
++target_link_libraries(${PROJECT_NAME} PUBLIC ${MATH_LIBRARY})
++endif()
++
++target_include_directories(${PROJECT_NAME} PUBLIC 
$)
++target_include_directories(${PROJECT_NAME}_dynalloc PUBLIC 
$)
++
++target_compile_definitions(${PROJECT_NAME} PUBLIC HEATSHRINK_DYNAMIC_ALLOC=0)
++target_compile_definitions(${PROJECT_NAME}_dynalloc PUBLIC 
HEATSHRINK_DYNAMIC_ALLOC=1)
++
++if (UNIX)
++  add_executable(${PROJECT_NAME}_cmd heatshrink.c)
++  target_link_libraries(${PROJECT_NAME}_cmd ${PROJECT_NAME}_dynalloc)
++  set_target_properties(${PROJECT_NAME}_cmd PROPERTIES OUTPUT_NAME 
${PROJECT_NAME})
++endif ()
++
++foreach (tgt ${PROJECT_NAME} ${PROJECT_NAME}_dynalloc)
++  set_target_properties(${tgt}
++PROPERTIES
++VERSION ${PROJECT_VERSION}
++SOVERSION ${PROJECT_VERSION})
++endforeach()
++
++# Installation and export:
++
++include(CMakePackageConfigHelpers)
++
++write_basic_package_version_file(
++"${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME}ConfigVersion.cmake"
++VERSION ${PROJECT_VERSION}
++COMPATIBILITY AnyNewerVersion
++)
++
++set(_exported_targets ${PROJECT_NAME} ${PROJECT_NAME}_dynalloc)
++if (UNIX)
++  list(APPEND _exported_targets ${PROJECT_NAME}_cmd)
++endif ()
++
++install(TARGETS ${_exported_targets}
++EXPORT ${PROJECT_NAME}Targets
++)
++
++export(EXPORT ${PROJECT_NAME}Targets 
++   FILE "${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME}Targets.cmake" 
++   NAMESPACE ${PROJECT_NAME}::
++)
++
++include(GNUInstallDirs)
++set(ConfigPackageLocation ${CMAKE_INSTALL_LIBDIR}/cmake/${PROJECT_NAME})
++
++configure_package_config_file(${CMAKE_CURRENT_SOURCE_DIR}/Config.cmake.in
++  "${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME}Config.cmake"
++  INSTALL_DESTINATION ${ConfigPackageLocation}
++)
++
++install(
++FILES
++  heatshrink_common.h
++  heatshrink_config.h
++  heatshrink_encoder.h
++  heatshrink_decoder.h
++DESTINATION
++  include/${PROJECT_NAME}
++  )
++
++install(EXPORT ${PROJECT_NAME}Targets
++  FILE
++${PROJECT_NAME}Targets.cmake
++  NAMESPACE
++${PROJECT_NAME}::
++  DESTINATION
++${ConfigPackageLocation}
++)
++
++install(
++  FILES
++"${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME}Config.cmake"
++"${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME}ConfigVersion.cmake"
++  DESTINATION
++${ConfigPackageLocation}
++)
+\ В конце файла нет новой строки
+diff -urN heatshrink-0.4.1.orig/Config.cmake.in 
heatshrink-0.4.1/Config.cmake.in
+--- heatshrink-0.4.1.orig/Config.cmake.in  1970-01-01 03:00:00.0 
+0300
 heatshrink-0.4.1/Config.cmake.in   2024-02-01 15:11:32.356696150 +0300
+@@ -0,0 +1,5 @@
++@PACKAGE_INIT@
++
++if (EXISTS ${CMAKE_CURRENT_LIST_DIR}/@PROJECT_NAME@Targets.cmake)
++include("${CMAKE_CURRENT_LIST_DIR}/@PROJECT_NAME@Targets.

[gentoo-commits] repo/gentoo:master commit in: media-gfx/libbgcode/

2024-02-01 Thread Alexey Shvetsov

commit: 6da5da70b719e25917cf494b8dba76c53c34827b
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Thu Feb  1 12:33:06 2024 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Feb  1 13:02:16 2024 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6da5da70

media-gfx/libbgcode: new package, add 0.0.20231116

Signed-off-by: Alexey Shvetsov  gentoo.org>

 media-gfx/libbgcode/Manifest  |  1 +
 media-gfx/libbgcode/libbgcode-0.0.20231116.ebuild | 27 +++
 media-gfx/libbgcode/metadata.xml  | 16 ++
 3 files changed, 44 insertions(+)

diff --git a/media-gfx/libbgcode/Manifest b/media-gfx/libbgcode/Manifest
new file mode 100644
index ..edb43024b6f7
--- /dev/null
+++ b/media-gfx/libbgcode/Manifest
@@ -0,0 +1 @@
+DIST libbgcode-0.0.20231116.tar.gz 455134 BLAKE2B 
63c37b7a8189ef5f14539d6e32cc442b91e65a8e0047c1d7cc2b6970a31b2aa02c212c7ed7dec4497392755d64550a28652b04746eaef279d4fb4a8ec58aac12
 SHA512 
605110a0e4ca16fd497dbe8b15f9794a75c19d5d5367320ddacaa621eb1a4370fcc5b8a799440d8b449774595c5bcbcd2d96fcb574707da475ef85764f9760d3

diff --git a/media-gfx/libbgcode/libbgcode-0.0.20231116.ebuild 
b/media-gfx/libbgcode/libbgcode-0.0.20231116.ebuild
new file mode 100644
index ..c0cf7e5f4299
--- /dev/null
+++ b/media-gfx/libbgcode/libbgcode-0.0.20231116.ebuild
@@ -0,0 +1,27 @@
+# Copyright 2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+inherit cmake
+
+LIBBGCODE_COMMIT=bc390aab4427589a6402b4c7f65cf4d0a8f987ec
+
+DESCRIPTION="Prusa Block & Binary G-code reader / writer / converter"
+HOMEPAGE="https://github.com/prusa3d/libbgcode;
+SRC_URI="https://github.com/prusa3d/libbgcode/archive/${LIBBGCODE_COMMIT}.tar.gz
 -> ${P}.tar.gz"
+
+LICENSE="AGPL-3"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~x86"
+
+DEPEND="
+   >=dev-libs/boost-1.82
+   >=dev-libs/heatshrink-0.4.1
+   >=dev-cpp/catch-2.13:0
+   =dev-python/pybind11-2.11
+"
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}/${PN}-${LIBBGCODE_COMMIT}"

diff --git a/media-gfx/libbgcode/metadata.xml b/media-gfx/libbgcode/metadata.xml
new file mode 100644
index ..7850cbb64c43
--- /dev/null
+++ b/media-gfx/libbgcode/metadata.xml
@@ -0,0 +1,16 @@
+
+https://www.gentoo.org/dtd/metadata.dtd;>
+
+   
+   3dpr...@gentoo.org
+   Gentoo 3D Printer Project
+   
+   
+   ale...@gentoo.org
+   Alexey Shvetsov
+   
+   
+   https://github.com/prusa3d/libbgcode/issues
+   prusa3d/libbgcode
+   
+

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2024-01-25 Thread Alexey Shvetsov

commit: bd6f2e88f2a58a354d576c20d96329a56c7e8d60
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Thu Jan 25 17:30:51 2024 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Jan 25 17:31:15 2024 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=bd6f2e88

sci-chemistry/gromacs: add 2023.3

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/Manifest  |   3 +
 sci-chemistry/gromacs/gromacs-2023.3.ebuild | 335 
 2 files changed, 338 insertions(+)

diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest
index 1d234e910a7c..6a26873979d3 100644
--- a/sci-chemistry/gromacs/Manifest
+++ b/sci-chemistry/gromacs/Manifest
@@ -7,6 +7,7 @@ DIST gromacs-2022.5.tar.gz 40362776 BLAKE2B 
e77c96cd995fb6c8284bcf9728e2f95e2659
 DIST gromacs-2022.6.tar.gz 40330705 BLAKE2B 
fdafbd5b2a92d6022dec3e79e961fef220f1eba42850916e7cb70ef459a8d9c6ebc8c1bbe3c105f5b23161dd5c552ec00505d7c0036649b782cf52c311498743
 SHA512 
91217394f534ca8f78f73189059712e1c2cd354b658722f23768b12748f7bfaf1a5e95227c5ed1b69c1a9b72c3174e9600a712c157ea2f27156387efb823dd67
 DIST gromacs-2023.1.tar.gz 41934072 BLAKE2B 
6d04642ba37a8563fafc10e0be83e33aab5ce25ef43ec2c9555e84328096bbe61426558a1433b086028f3c6637a5b3ae82241e67f206c0dd0b5254f5ec27ae4c
 SHA512 
4bddbbc56f26487db9d35f371d65725289d1355dc4c295d32698499e05eb74e31d4db579fc1f665edb55a68b002bddacf37c0f05d3f970bc149990d434b1
 DIST gromacs-2023.2.tar.gz 41930578 BLAKE2B 
ee115ba45711867ced4ad08cede0e87dffd7c4e7a45ff3ee0c06b2f46b0dec838e4b532e092ce3abd993e231ca7d517d9941b371fd6d9d64d581862dc67c449c
 SHA512 
9bc17f310e6be6fd51b7c07bde0b58e8fa15085b2c073eb7bed0db917646586dee5d7cf9b4b178e9b4cedd40d4bcd967edcc4b26debaec6f4ca94399b13b9186
+DIST gromacs-2023.3.tar.gz 42071770 BLAKE2B 
dea0f6b0ccd67bfa4fc58c06bd3eda6d17a7f4b1c6746c2743860cf00ba514884a27140b65b7830ca340c233510ace1734ecc09e393be3e9761e31b9e4abfeb6
 SHA512 
016181be78887b0e31bc7fd124ac7c25c923c6bab1ffe43d3b4a744ae68203bb9d9f976c4c81bce344f4ea8e9d610ebd5b631b2202fcd6cfefd8c1ad0ebfe10d
 DIST gromacs-2024-rc.tar.gz 42467347 BLAKE2B 
ee9e8dd15f5fc4df267678689b2ee22beb1de0a16ed3c620063d25b3e9df2295415dccf03e9aac7b7834e0ccca4ca1aa9b6db68aacc63399f947ed6d40b0025d
 SHA512 
fe2de756b5dfa4d64fd974e3ffd1af561edb6102e42f2443fe27d9c06e6c0ed3afcd31c38ecab4de253e531a1d8a546690e2231ba20a5bdd4bc204491dc1b4fc
 DIST manual-2018.8.pdf 10025023 BLAKE2B 
afb0a6e6a72d78df743fcb57e7c1716848589e571dd35167b957a9b407ca27978ccfb6cb9e0df9c9439b888f352501a00ba32281ed1e0b4193bd606f1d77152e
 SHA512 
b1972f7ce965bfc9377542993c5943ea4868a8ed23a969d4203264746d6bea3a7a65c6379196ece37fd6d68ec7ec80f827bde87d1049284af7082759a124f1d5
 DIST manual-2019.6.pdf 12702376 BLAKE2B 
c350127bc06a9eb3dee73da39037c84daeb89500e23cb131bd19a150bf60602d4dde7611e0c6f0f344af4093e96a899303dac71b4df56fd0c44c3a48a56606b7
 SHA512 
dfdff67c2c1c9ce1f1c236b7686c5331b0fe86951da6c98eddd6a3e748815e0be0a9653ae4318469fcdd913c4e7c355d64a997cc80b9d9fbe6282ef6d98e61eb
@@ -17,6 +18,7 @@ DIST manual-2022.5.pdf 13081119 BLAKE2B 
7a0ffd086d98527d42da4a22984d8351ad7861e3
 DIST manual-2022.6.pdf 13081140 BLAKE2B 
e7ae3f23ddc076c295be2c464fe2177d6d6848d070ee5eba2b572e996ae08adead898ec6432b123802907f64983aa4d2e17426be8d540c48d12398a479519f9e
 SHA512 
4724888b3c33c4fa4a035d5fb2f8c51496f67e1ee312676510d5ba74bc3cc1571e71e84464585b87ad0133e8e736343ae382bf8f7b556633f86a99560213d271
 DIST manual-2023.1.pdf 13526498 BLAKE2B 
a9aabcb722954c9c83a8f5945c85e634b0b82ace8b9b077c3f2b9ff432ca71d3e2d5ca2dd52d6ce489d77d3d4ca7b41d75e5566205bb8855caa650fa2722e5ec
 SHA512 
b6ca6c822ac5b3cbe3c84d8fd51d3ed465268c00bb5f96e2afa557d45f9c534b0de278f33a0fdf43080c9c619344b98cd71847e17b297a789eec4c8b42dea7b2
 DIST manual-2023.2.pdf 13547562 BLAKE2B 
17155c82d968003706f974e2fb513dced28987e4630c455674d4088dcb827136e2b7b66836a2bf7f9be472254c11ab4ec98cace1462e85a7a18b0f1eb1760781
 SHA512 
b8026422fb367bf58d6ddb727afe2f1b208c9abb4eb513d85d395a19a82a7fcf362390f4ae5718fa17b0aeb7bf2c90567f40913fdc3cfc51c63d3757ab5a4905
+DIST manual-2023.3.pdf 13565055 BLAKE2B 
0332b5c4de863e9f33d7ae7404741ee8f7f503ee0d2dc723e9cc42e9fd3fb8fc74313b43589cbfc7127daec24b721ba79a3c53ff509e718992ccbde14889ea2f
 SHA512 
144220f18bfab6fefec738a7af743bd01733a896c853963ce113354da05514941862412786f0e2183de77634b31b334814d42daae87a9009ec028ed87685
 DIST manual-2024-rc.pdf 13645392 BLAKE2B 
06456a805b7e85924c34d6b940d32e6e9eae1a117e50a02cfe2dd909e79968a69a78eca95ec765671ea30cdc74a1c6c9314dfa2cd8da50ef378f6f7c685e068f
 SHA512 
b20eaea8d6fcd260018bbac76c33e4994f85bd470d6c111ced3b32f0ff805834c4c18020adfc643ec1cf7d10172b5a5a5f4ed404b912ddf25646d16f36e21d54
 DIST regressiontests-2018.8.tar.gz 67855469 BLAKE2B 
34c9b339f6229f483afbb5192ee6ba8b8f72d5c26907a853af9c53dfece0d88739e48f6b44b78d1c010f988f9385d077285300522164f533a5861e9dda879275
 SHA512 
3642389d27bd1942cd0f091c940ae97b197b94856a387fe581dc516b0d4169480f16551d4ba357f9282b3337d605c286d51dd38112ac87c826dda63490483

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2024-01-20 Thread Alexey Shvetsov

commit: 2f6c32fed42079926f5ef3b70e3e6593b272dd23
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Sat Jan 20 21:08:34 2024 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Sat Jan 20 21:08:34 2024 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=2f6c32fe

sci-chemistry/gromacs: add 2024_rc, drop 2024_beta

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/Manifest  | 6 +++---
 .../gromacs/{gromacs-2024_beta.ebuild => gromacs-2024_rc.ebuild}| 0
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest
index 1601c97d1e2a..1d234e910a7c 100644
--- a/sci-chemistry/gromacs/Manifest
+++ b/sci-chemistry/gromacs/Manifest
@@ -7,7 +7,7 @@ DIST gromacs-2022.5.tar.gz 40362776 BLAKE2B 
e77c96cd995fb6c8284bcf9728e2f95e2659
 DIST gromacs-2022.6.tar.gz 40330705 BLAKE2B 
fdafbd5b2a92d6022dec3e79e961fef220f1eba42850916e7cb70ef459a8d9c6ebc8c1bbe3c105f5b23161dd5c552ec00505d7c0036649b782cf52c311498743
 SHA512 
91217394f534ca8f78f73189059712e1c2cd354b658722f23768b12748f7bfaf1a5e95227c5ed1b69c1a9b72c3174e9600a712c157ea2f27156387efb823dd67
 DIST gromacs-2023.1.tar.gz 41934072 BLAKE2B 
6d04642ba37a8563fafc10e0be83e33aab5ce25ef43ec2c9555e84328096bbe61426558a1433b086028f3c6637a5b3ae82241e67f206c0dd0b5254f5ec27ae4c
 SHA512 
4bddbbc56f26487db9d35f371d65725289d1355dc4c295d32698499e05eb74e31d4db579fc1f665edb55a68b002bddacf37c0f05d3f970bc149990d434b1
 DIST gromacs-2023.2.tar.gz 41930578 BLAKE2B 
ee115ba45711867ced4ad08cede0e87dffd7c4e7a45ff3ee0c06b2f46b0dec838e4b532e092ce3abd993e231ca7d517d9941b371fd6d9d64d581862dc67c449c
 SHA512 
9bc17f310e6be6fd51b7c07bde0b58e8fa15085b2c073eb7bed0db917646586dee5d7cf9b4b178e9b4cedd40d4bcd967edcc4b26debaec6f4ca94399b13b9186
-DIST gromacs-2024-beta.tar.gz 43450821 BLAKE2B 
76a88058bca3aa2e2d40a262c59016f006d8c1bf168564580f61fe94384c741d832892c07b57893b001ce5ac8dfc1f8b38a5608cf5b7c4e067d4d91c93fc14d8
 SHA512 
b96c18f44cff6941024e70b7b68a801272caf1fc8037668ac1d77dfbfc028e7ee0cf889a469a68a2e8440d810e4c55ef1de38164345ea393237af3f1b789fa7a
+DIST gromacs-2024-rc.tar.gz 42467347 BLAKE2B 
ee9e8dd15f5fc4df267678689b2ee22beb1de0a16ed3c620063d25b3e9df2295415dccf03e9aac7b7834e0ccca4ca1aa9b6db68aacc63399f947ed6d40b0025d
 SHA512 
fe2de756b5dfa4d64fd974e3ffd1af561edb6102e42f2443fe27d9c06e6c0ed3afcd31c38ecab4de253e531a1d8a546690e2231ba20a5bdd4bc204491dc1b4fc
 DIST manual-2018.8.pdf 10025023 BLAKE2B 
afb0a6e6a72d78df743fcb57e7c1716848589e571dd35167b957a9b407ca27978ccfb6cb9e0df9c9439b888f352501a00ba32281ed1e0b4193bd606f1d77152e
 SHA512 
b1972f7ce965bfc9377542993c5943ea4868a8ed23a969d4203264746d6bea3a7a65c6379196ece37fd6d68ec7ec80f827bde87d1049284af7082759a124f1d5
 DIST manual-2019.6.pdf 12702376 BLAKE2B 
c350127bc06a9eb3dee73da39037c84daeb89500e23cb131bd19a150bf60602d4dde7611e0c6f0f344af4093e96a899303dac71b4df56fd0c44c3a48a56606b7
 SHA512 
dfdff67c2c1c9ce1f1c236b7686c5331b0fe86951da6c98eddd6a3e748815e0be0a9653ae4318469fcdd913c4e7c355d64a997cc80b9d9fbe6282ef6d98e61eb
 DIST manual-2020.7.pdf 11850780 BLAKE2B 
38594e87993badfbbcf47d6010a7f67d3c3426dab85e1462916b4d62be27b5764953f912cf2b71ee24877e0bfa27b3f74431da2da81b4977d58cb66b2cc795a3
 SHA512 
4f184f2c90e0bac01a48069cc546cd5b04fa5f543f90dd2d68c6d17be278152fd09456b6a6c5c8236f8fb85a174d6ec7a1c7b44d437b4e6fea5d0ada73cec0f6
@@ -17,7 +17,7 @@ DIST manual-2022.5.pdf 13081119 BLAKE2B 
7a0ffd086d98527d42da4a22984d8351ad7861e3
 DIST manual-2022.6.pdf 13081140 BLAKE2B 
e7ae3f23ddc076c295be2c464fe2177d6d6848d070ee5eba2b572e996ae08adead898ec6432b123802907f64983aa4d2e17426be8d540c48d12398a479519f9e
 SHA512 
4724888b3c33c4fa4a035d5fb2f8c51496f67e1ee312676510d5ba74bc3cc1571e71e84464585b87ad0133e8e736343ae382bf8f7b556633f86a99560213d271
 DIST manual-2023.1.pdf 13526498 BLAKE2B 
a9aabcb722954c9c83a8f5945c85e634b0b82ace8b9b077c3f2b9ff432ca71d3e2d5ca2dd52d6ce489d77d3d4ca7b41d75e5566205bb8855caa650fa2722e5ec
 SHA512 
b6ca6c822ac5b3cbe3c84d8fd51d3ed465268c00bb5f96e2afa557d45f9c534b0de278f33a0fdf43080c9c619344b98cd71847e17b297a789eec4c8b42dea7b2
 DIST manual-2023.2.pdf 13547562 BLAKE2B 
17155c82d968003706f974e2fb513dced28987e4630c455674d4088dcb827136e2b7b66836a2bf7f9be472254c11ab4ec98cace1462e85a7a18b0f1eb1760781
 SHA512 
b8026422fb367bf58d6ddb727afe2f1b208c9abb4eb513d85d395a19a82a7fcf362390f4ae5718fa17b0aeb7bf2c90567f40913fdc3cfc51c63d3757ab5a4905
-DIST manual-2024-beta.pdf 13617069 BLAKE2B 
143d934f9343c0ce30c1f3f7f34868c17993c167cf1360bf0e9491dbf0ad7d062a99c7c7c8284bb950169d36e5a182c7916fae0a0ea470ee94983a6da5cc3f33
 SHA512 
c1b924da57d15034d43f29db34efbd86ee1f12fe0d07f644e5e7e8bf80c7a1e687b955f84fb1c23cfbf6e21731cb0fe01ea9973ab8a873e193a0c8cfeba28d9d
+DIST manual-2024-rc.pdf 13645392 BLAKE2B 
06456a805b7e85924c34d6b940d32e6e9eae1a117e50a02cfe2dd909e79968a69a78eca95ec765671ea30cdc74a1c6c9314dfa2cd8da50ef378f6f7c685e

[gentoo-commits] repo/gentoo:master commit in: dev-embedded/platformio/

2024-01-09 Thread Alexey Shvetsov

commit: 79cf27fdef3bbcf712263c11f8a0be2bd26ffddd
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Tue Jan  9 19:57:09 2024 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Tue Jan  9 19:57:09 2024 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=79cf27fd

dev-embedded/platformio: add 6.1.11, drop 6.1.6-r2

Closes: https://bugs.gentoo.org/907336
Signed-off-by: Alexey Shvetsov  gentoo.org>

 dev-embedded/platformio/Manifest   |  2 +-
 .../{platformio-6.1.6-r2.ebuild => platformio-6.1.11.ebuild}   | 10 +-
 2 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/dev-embedded/platformio/Manifest b/dev-embedded/platformio/Manifest
index f4ae6a7f0739..9434f03835b0 100644
--- a/dev-embedded/platformio/Manifest
+++ b/dev-embedded/platformio/Manifest
@@ -1 +1 @@
-DIST platformio-6.1.6.tar.gz 295288 BLAKE2B 
4508f3eda25cbb2d2bad6881d7041a9bd8bb87b452564b3cabd58bec0506ca10e53b2552eee8ac1984cb429e5ea52c332d863f1c76a10b5106ab238e6506bb87
 SHA512 
879fbc759476118473d13375e4dcdbda901f48f5d0d9bb94bdd3ed09de2563603880b91d102e35eaf144e61cd457b132056e0a8293b762b3566a537f3b886078
+DIST platformio-6.1.11.gh.tar.gz 296333 BLAKE2B 
17672b499eca9c828cd7c6ea6a4c8acea7287f42bb78d4fc5fbd11bb93175bb87d9c2d100270869bc99bc0db550b49c163555ddd8edb17b6b33ccc5f3623f768
 SHA512 
450e3d1dc3b9c8124b6254fbf0a05b207b834aa0661f083ee2915bde5064498b6d5af666ad851b737fa5627ed436db983e038f83ed0437a1e248749a0dcc99ba

diff --git a/dev-embedded/platformio/platformio-6.1.6-r2.ebuild 
b/dev-embedded/platformio/platformio-6.1.11.ebuild
similarity index 93%
rename from dev-embedded/platformio/platformio-6.1.6-r2.ebuild
rename to dev-embedded/platformio/platformio-6.1.11.ebuild
index 5a870f66e445..98da137e5799 100644
--- a/dev-embedded/platformio/platformio-6.1.6-r2.ebuild
+++ b/dev-embedded/platformio/platformio-6.1.11.ebuild
@@ -1,17 +1,17 @@
-# Copyright 1999-2023 Gentoo Authors
+# Copyright 1999-2024 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=8
 
 DISTUTILS_SINGLE_IMPL=1
 DISTUTILS_USE_PEP517=setuptools
-PYTHON_COMPAT=( python3_{9..11} )
+PYTHON_COMPAT=( python3_{10..12} )
 
 inherit distutils-r1 udev
 
 DESCRIPTION="An open source ecosystem for IoT development"
 HOMEPAGE="https://platformio.org/;
-SRC_URI="https://github.com/platformio/platformio-core/archive/refs/tags/v${PV}.tar.gz
 -> ${P}.tar.gz"
+SRC_URI="https://github.com/platformio/platformio-core/archive/refs/tags/v${PV}.tar.gz
 -> ${P}.gh.tar.gz"
 S="${WORKDIR}"/${PN}-core-${PV}
 
 LICENSE="BSD"
@@ -29,11 +29,11 @@ RDEPEND="
=dev-python/zeroconf-0.37[${PYTHON_USEDEP}]
=dev-python/requests-2*[${PYTHON_USEDEP}]
-   >=dev-python/semantic-version-2.9[${PYTHON_USEDEP}]
+   >=dev-python/semantic-version-2.10[${PYTHON_USEDEP}]
=dev-python/pyelftools-0.27[${PYTHON_USEDEP}]
+   >=dev-python/pyelftools-0.30[${PYTHON_USEDEP}]
=dev-python/starlette-0.21[${PYTHON_USEDEP}]

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2023-11-24 Thread Alexey Shvetsov

commit: 53fa1e6acdefa7c210916e1405b3c4a10db80187
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Fri Nov 24 21:38:49 2023 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Fri Nov 24 21:38:49 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=53fa1e6a

sci-chemistry/gromacs: add 2024_beta, 2024.

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/Manifest |   3 +
 sci-chemistry/gromacs/gromacs-2024..ebuild | 335 +
 sci-chemistry/gromacs/gromacs-2024_beta.ebuild | 335 +
 3 files changed, 673 insertions(+)

diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest
index 807a9d5c7481..1601c97d1e2a 100644
--- a/sci-chemistry/gromacs/Manifest
+++ b/sci-chemistry/gromacs/Manifest
@@ -7,6 +7,7 @@ DIST gromacs-2022.5.tar.gz 40362776 BLAKE2B 
e77c96cd995fb6c8284bcf9728e2f95e2659
 DIST gromacs-2022.6.tar.gz 40330705 BLAKE2B 
fdafbd5b2a92d6022dec3e79e961fef220f1eba42850916e7cb70ef459a8d9c6ebc8c1bbe3c105f5b23161dd5c552ec00505d7c0036649b782cf52c311498743
 SHA512 
91217394f534ca8f78f73189059712e1c2cd354b658722f23768b12748f7bfaf1a5e95227c5ed1b69c1a9b72c3174e9600a712c157ea2f27156387efb823dd67
 DIST gromacs-2023.1.tar.gz 41934072 BLAKE2B 
6d04642ba37a8563fafc10e0be83e33aab5ce25ef43ec2c9555e84328096bbe61426558a1433b086028f3c6637a5b3ae82241e67f206c0dd0b5254f5ec27ae4c
 SHA512 
4bddbbc56f26487db9d35f371d65725289d1355dc4c295d32698499e05eb74e31d4db579fc1f665edb55a68b002bddacf37c0f05d3f970bc149990d434b1
 DIST gromacs-2023.2.tar.gz 41930578 BLAKE2B 
ee115ba45711867ced4ad08cede0e87dffd7c4e7a45ff3ee0c06b2f46b0dec838e4b532e092ce3abd993e231ca7d517d9941b371fd6d9d64d581862dc67c449c
 SHA512 
9bc17f310e6be6fd51b7c07bde0b58e8fa15085b2c073eb7bed0db917646586dee5d7cf9b4b178e9b4cedd40d4bcd967edcc4b26debaec6f4ca94399b13b9186
+DIST gromacs-2024-beta.tar.gz 43450821 BLAKE2B 
76a88058bca3aa2e2d40a262c59016f006d8c1bf168564580f61fe94384c741d832892c07b57893b001ce5ac8dfc1f8b38a5608cf5b7c4e067d4d91c93fc14d8
 SHA512 
b96c18f44cff6941024e70b7b68a801272caf1fc8037668ac1d77dfbfc028e7ee0cf889a469a68a2e8440d810e4c55ef1de38164345ea393237af3f1b789fa7a
 DIST manual-2018.8.pdf 10025023 BLAKE2B 
afb0a6e6a72d78df743fcb57e7c1716848589e571dd35167b957a9b407ca27978ccfb6cb9e0df9c9439b888f352501a00ba32281ed1e0b4193bd606f1d77152e
 SHA512 
b1972f7ce965bfc9377542993c5943ea4868a8ed23a969d4203264746d6bea3a7a65c6379196ece37fd6d68ec7ec80f827bde87d1049284af7082759a124f1d5
 DIST manual-2019.6.pdf 12702376 BLAKE2B 
c350127bc06a9eb3dee73da39037c84daeb89500e23cb131bd19a150bf60602d4dde7611e0c6f0f344af4093e96a899303dac71b4df56fd0c44c3a48a56606b7
 SHA512 
dfdff67c2c1c9ce1f1c236b7686c5331b0fe86951da6c98eddd6a3e748815e0be0a9653ae4318469fcdd913c4e7c355d64a997cc80b9d9fbe6282ef6d98e61eb
 DIST manual-2020.7.pdf 11850780 BLAKE2B 
38594e87993badfbbcf47d6010a7f67d3c3426dab85e1462916b4d62be27b5764953f912cf2b71ee24877e0bfa27b3f74431da2da81b4977d58cb66b2cc795a3
 SHA512 
4f184f2c90e0bac01a48069cc546cd5b04fa5f543f90dd2d68c6d17be278152fd09456b6a6c5c8236f8fb85a174d6ec7a1c7b44d437b4e6fea5d0ada73cec0f6
@@ -16,6 +17,7 @@ DIST manual-2022.5.pdf 13081119 BLAKE2B 
7a0ffd086d98527d42da4a22984d8351ad7861e3
 DIST manual-2022.6.pdf 13081140 BLAKE2B 
e7ae3f23ddc076c295be2c464fe2177d6d6848d070ee5eba2b572e996ae08adead898ec6432b123802907f64983aa4d2e17426be8d540c48d12398a479519f9e
 SHA512 
4724888b3c33c4fa4a035d5fb2f8c51496f67e1ee312676510d5ba74bc3cc1571e71e84464585b87ad0133e8e736343ae382bf8f7b556633f86a99560213d271
 DIST manual-2023.1.pdf 13526498 BLAKE2B 
a9aabcb722954c9c83a8f5945c85e634b0b82ace8b9b077c3f2b9ff432ca71d3e2d5ca2dd52d6ce489d77d3d4ca7b41d75e5566205bb8855caa650fa2722e5ec
 SHA512 
b6ca6c822ac5b3cbe3c84d8fd51d3ed465268c00bb5f96e2afa557d45f9c534b0de278f33a0fdf43080c9c619344b98cd71847e17b297a789eec4c8b42dea7b2
 DIST manual-2023.2.pdf 13547562 BLAKE2B 
17155c82d968003706f974e2fb513dced28987e4630c455674d4088dcb827136e2b7b66836a2bf7f9be472254c11ab4ec98cace1462e85a7a18b0f1eb1760781
 SHA512 
b8026422fb367bf58d6ddb727afe2f1b208c9abb4eb513d85d395a19a82a7fcf362390f4ae5718fa17b0aeb7bf2c90567f40913fdc3cfc51c63d3757ab5a4905
+DIST manual-2024-beta.pdf 13617069 BLAKE2B 
143d934f9343c0ce30c1f3f7f34868c17993c167cf1360bf0e9491dbf0ad7d062a99c7c7c8284bb950169d36e5a182c7916fae0a0ea470ee94983a6da5cc3f33
 SHA512 
c1b924da57d15034d43f29db34efbd86ee1f12fe0d07f644e5e7e8bf80c7a1e687b955f84fb1c23cfbf6e21731cb0fe01ea9973ab8a873e193a0c8cfeba28d9d
 DIST regressiontests-2018.8.tar.gz 67855469 BLAKE2B 
34c9b339f6229f483afbb5192ee6ba8b8f72d5c26907a853af9c53dfece0d88739e48f6b44b78d1c010f988f9385d077285300522164f533a5861e9dda879275
 SHA512 
3642389d27bd1942cd0f091c940ae97b197b94856a387fe581dc516b0d4169480f16551d4ba357f9282b3337d605c286d51dd38112ac87c826dda634904836bb
 DIST regressiontests-2019.6.tar.gz 67643195 BLAKE2B 
1e054e24b187946f7ea28090d4f20cf8e1d79a26253f57ba07d130e0773d8541b8a1552a38023d31a68ce8bc62d8e0af1d98609234bb3e7d3e6d567307ebb38

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2023-11-01 Thread Alexey Shvetsov

commit: 6d101a5b09a91583109c2a6f6c2f90f6519987f5
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Wed Nov  1 07:52:45 2023 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Wed Nov  1 07:52:45 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6d101a5b

sci-chemistry/gromacs: enable py3.12

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/gromacs-2020.7-r1.ebuild | 2 +-
 sci-chemistry/gromacs/gromacs-2021.6.ebuild| 2 +-
 sci-chemistry/gromacs/gromacs-2021.7-r1.ebuild | 2 +-
 sci-chemistry/gromacs/gromacs-2022.5-r1.ebuild | 2 +-
 sci-chemistry/gromacs/gromacs-2022.6.ebuild| 2 +-
 sci-chemistry/gromacs/gromacs-2022..ebuild | 2 +-
 sci-chemistry/gromacs/gromacs-2023.1-r1.ebuild | 2 +-
 sci-chemistry/gromacs/gromacs-2023.2.ebuild| 2 +-
 sci-chemistry/gromacs/gromacs-2023..ebuild | 2 +-
 sci-chemistry/gromacs/gromacs-.ebuild  | 2 +-
 10 files changed, 10 insertions(+), 10 deletions(-)

diff --git a/sci-chemistry/gromacs/gromacs-2020.7-r1.ebuild 
b/sci-chemistry/gromacs/gromacs-2020.7-r1.ebuild
index 6d32f835a853..c82b858efd34 100644
--- a/sci-chemistry/gromacs/gromacs-2020.7-r1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2020.7-r1.ebuild
@@ -5,7 +5,7 @@ EAPI=8
 
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
-PYTHON_COMPAT=( python3_{10..11} )
+PYTHON_COMPAT=( python3_{10..12} )
 
 DISTUTILS_OPTIONAL=1
 DISTUTILS_USE_PEP517=no

diff --git a/sci-chemistry/gromacs/gromacs-2021.6.ebuild 
b/sci-chemistry/gromacs/gromacs-2021.6.ebuild
index d2f4420183d2..ea9a704a03f6 100644
--- a/sci-chemistry/gromacs/gromacs-2021.6.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2021.6.ebuild
@@ -5,7 +5,7 @@ EAPI=8
 
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
-PYTHON_COMPAT=( python3_{10..11} )
+PYTHON_COMPAT=( python3_{10..12} )
 
 DISTUTILS_OPTIONAL=1
 DISTUTILS_USE_PEP517=no

diff --git a/sci-chemistry/gromacs/gromacs-2021.7-r1.ebuild 
b/sci-chemistry/gromacs/gromacs-2021.7-r1.ebuild
index 8d0e281a03be..8cdb0ae9c78e 100644
--- a/sci-chemistry/gromacs/gromacs-2021.7-r1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2021.7-r1.ebuild
@@ -5,7 +5,7 @@ EAPI=8
 
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
-PYTHON_COMPAT=( python3_{10..11} )
+PYTHON_COMPAT=( python3_{10..12} )
 
 DISTUTILS_OPTIONAL=1
 DISTUTILS_USE_PEP517=no

diff --git a/sci-chemistry/gromacs/gromacs-2022.5-r1.ebuild 
b/sci-chemistry/gromacs/gromacs-2022.5-r1.ebuild
index ca6fbd98c22b..9a91a5cbac88 100644
--- a/sci-chemistry/gromacs/gromacs-2022.5-r1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2022.5-r1.ebuild
@@ -5,7 +5,7 @@ EAPI=8
 
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
-PYTHON_COMPAT=( python3_{10..11} )
+PYTHON_COMPAT=( python3_{10..12} )
 
 DISTUTILS_OPTIONAL=1
 DISTUTILS_USE_PEP517=no

diff --git a/sci-chemistry/gromacs/gromacs-2022.6.ebuild 
b/sci-chemistry/gromacs/gromacs-2022.6.ebuild
index ca6fbd98c22b..9a91a5cbac88 100644
--- a/sci-chemistry/gromacs/gromacs-2022.6.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2022.6.ebuild
@@ -5,7 +5,7 @@ EAPI=8
 
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
-PYTHON_COMPAT=( python3_{10..11} )
+PYTHON_COMPAT=( python3_{10..12} )
 
 DISTUTILS_OPTIONAL=1
 DISTUTILS_USE_PEP517=no

diff --git a/sci-chemistry/gromacs/gromacs-2022..ebuild 
b/sci-chemistry/gromacs/gromacs-2022..ebuild
index ca6fbd98c22b..9a91a5cbac88 100644
--- a/sci-chemistry/gromacs/gromacs-2022..ebuild
+++ b/sci-chemistry/gromacs/gromacs-2022..ebuild
@@ -5,7 +5,7 @@ EAPI=8
 
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
-PYTHON_COMPAT=( python3_{10..11} )
+PYTHON_COMPAT=( python3_{10..12} )
 
 DISTUTILS_OPTIONAL=1
 DISTUTILS_USE_PEP517=no

diff --git a/sci-chemistry/gromacs/gromacs-2023.1-r1.ebuild 
b/sci-chemistry/gromacs/gromacs-2023.1-r1.ebuild
index e052510b629f..92e8d1b21ec5 100644
--- a/sci-chemistry/gromacs/gromacs-2023.1-r1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2023.1-r1.ebuild
@@ -5,7 +5,7 @@ EAPI=8
 
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
-PYTHON_COMPAT=( python3_{10..11} )
+PYTHON_COMPAT=( python3_{10..12} )
 
 DISTUTILS_OPTIONAL=1
 DISTUTILS_USE_PEP517=no

diff --git a/sci-chemistry/gromacs/gromacs-2023.2.ebuild 
b/sci-chemistry/gromacs/gromacs-2023.2.ebuild
index e052510b629f..92e8d1b21ec5 100644
--- a/sci-chemistry/gromacs/gromacs-2023.2.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2023.2.ebuild
@@ -5,7 +5,7 @@ EAPI=8
 
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
-PYTHON_COMPAT=( python3_{10..11} )
+PYTHON_COMPAT=( python3_{10..12} )
 
 DISTUTILS_OPTIONAL=1
 DISTUTILS_USE_PEP517=no

diff --git a/sci-chemistry/gromacs/gromacs-2023..ebuild 
b/sci-chemistry/gromacs/gromacs-2023..ebuild
index e052510b629f..92e8d1b21ec5 100644
--- a/sci-chemistry/gromacs/gromacs-2023..ebuild
+++ b/sci-chemistry/gromacs/gromacs-2023..ebuild
@@ -5,7 +5,7 @@ EAPI=8
 
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
-PYTHON_COMPAT=( python3_{10..11} )
+PYTHON_COMPAT=( python3_{10..12} )
 
 DISTUTILS_OPTIONAL=1
 DISTUTILS_USE_PEP5

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2023-11-01 Thread Alexey Shvetsov

commit: a976a11bf416436108dadba6b3ab7f50c069beeb
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Wed Nov  1 07:50:55 2023 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Wed Nov  1 07:50:55 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a976a11b

sci-chemistry/gromacs: add quotes for ${HOME}

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/gromacs-2020.7-r1.ebuild | 4 ++--
 sci-chemistry/gromacs/gromacs-2021.6.ebuild| 4 ++--
 sci-chemistry/gromacs/gromacs-2021.7-r1.ebuild | 4 ++--
 sci-chemistry/gromacs/gromacs-2022.5-r1.ebuild | 4 ++--
 sci-chemistry/gromacs/gromacs-2022.6.ebuild| 4 ++--
 sci-chemistry/gromacs/gromacs-2022..ebuild | 4 ++--
 sci-chemistry/gromacs/gromacs-2023.1-r1.ebuild | 4 ++--
 sci-chemistry/gromacs/gromacs-2023.2.ebuild| 4 ++--
 sci-chemistry/gromacs/gromacs-2023..ebuild | 4 ++--
 sci-chemistry/gromacs/gromacs-.ebuild  | 4 ++--
 10 files changed, 20 insertions(+), 20 deletions(-)

diff --git a/sci-chemistry/gromacs/gromacs-2020.7-r1.ebuild 
b/sci-chemistry/gromacs/gromacs-2020.7-r1.ebuild
index deddfa2607d8..6d32f835a853 100644
--- a/sci-chemistry/gromacs/gromacs-2020.7-r1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2020.7-r1.ebuild
@@ -138,8 +138,8 @@ src_prepare() {
DOC_CONTENTS="Gromacs can use sci-chemistry/vmd to read additional file 
formats"
if use build-manual; then
# try to create policy for imagemagik
-   mkdir -p ${HOME}/.config/ImageMagick
-   cat >> ${HOME}/.config/ImageMagick/policy.xml <<- EOF
+   mkdir -p "${HOME}"/.config/ImageMagick
+   cat >> "${HOME}"/.config/ImageMagick/policy.xml <<- EOF



diff --git a/sci-chemistry/gromacs/gromacs-2021.6.ebuild 
b/sci-chemistry/gromacs/gromacs-2021.6.ebuild
index f22757c7a054..d2f4420183d2 100644
--- a/sci-chemistry/gromacs/gromacs-2021.6.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2021.6.ebuild
@@ -138,8 +138,8 @@ src_prepare() {
DOC_CONTENTS="Gromacs can use sci-chemistry/vmd to read additional file 
formats"
if use build-manual; then
# try to create policy for imagemagik
-   mkdir -p ${HOME}/.config/ImageMagick
-   cat >> ${HOME}/.config/ImageMagick/policy.xml <<- EOF
+   mkdir -p "${HOME}"/.config/ImageMagick
+   cat >> "${HOME}"/.config/ImageMagick/policy.xml <<- EOF



diff --git a/sci-chemistry/gromacs/gromacs-2021.7-r1.ebuild 
b/sci-chemistry/gromacs/gromacs-2021.7-r1.ebuild
index 63f1ff82b83b..8d0e281a03be 100644
--- a/sci-chemistry/gromacs/gromacs-2021.7-r1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2021.7-r1.ebuild
@@ -142,8 +142,8 @@ src_prepare() {
DOC_CONTENTS="Gromacs can use sci-chemistry/vmd to read additional file 
formats"
if use build-manual; then
# try to create policy for imagemagik
-   mkdir -p ${HOME}/.config/ImageMagick
-   cat >> ${HOME}/.config/ImageMagick/policy.xml <<- EOF
+   mkdir -p "${HOME}"/.config/ImageMagick
+   cat >> "${HOME}"/.config/ImageMagick/policy.xml <<- EOF



diff --git a/sci-chemistry/gromacs/gromacs-2022.5-r1.ebuild 
b/sci-chemistry/gromacs/gromacs-2022.5-r1.ebuild
index 45b0137cb890..ca6fbd98c22b 100644
--- a/sci-chemistry/gromacs/gromacs-2022.5-r1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2022.5-r1.ebuild
@@ -149,8 +149,8 @@ src_prepare() {
DOC_CONTENTS="Gromacs can use sci-chemistry/vmd to read additional file 
formats"
if use build-manual; then
# try to create policy for imagemagik
-   mkdir -p ${HOME}/.config/ImageMagick
-   cat >> ${HOME}/.config/ImageMagick/policy.xml <<- EOF
+   mkdir -p "${HOME}"/.config/ImageMagick
+   cat >> "${HOME}"/.config/ImageMagick/policy.xml <<- EOF



diff --git a/sci-chemistry/gromacs/gromacs-2022.6.ebuild 
b/sci-chemistry/gromacs/gromacs-2022.6.ebuild
index 45b0137cb890..ca6fbd98c22b 100644
--- a/sci-chemistry/gromacs/gromacs-2022.6.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2022.6.ebuild
@@ -149,8 +149,8 @@ src_prepare() {
DOC_CONTENTS="Gromacs can use sci-chemistry/vmd to read additional file 
formats"
if use build-manual; then
# try to create policy for imagemagik
-   mkdir -p ${HOME}/.config/ImageMagick
-   cat >> ${HOME}/.config/ImageMagick/policy.xml <<- EOF
+   mkdir -p "${HOME}"/.config/ImageMagick
+   cat >> "${HOME}"/.config/ImageMagick/policy.xml

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2023-11-01 Thread Alexey Shvetsov

commit: 459d3befd5266a5a7d2c9ac2d38f18c2cc8041a9
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Wed Nov  1 07:47:01 2023 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Wed Nov  1 07:47:01 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=459d3bef

sci-chemistry/gromacs: disable py3.9

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/gromacs-2020.7-r1.ebuild | 2 +-
 sci-chemistry/gromacs/gromacs-2021.6.ebuild| 2 +-
 sci-chemistry/gromacs/gromacs-2021.7-r1.ebuild | 2 +-
 sci-chemistry/gromacs/gromacs-2022.5-r1.ebuild | 2 +-
 sci-chemistry/gromacs/gromacs-2022.6.ebuild| 2 +-
 sci-chemistry/gromacs/gromacs-2022..ebuild | 2 +-
 sci-chemistry/gromacs/gromacs-2023.1-r1.ebuild | 2 +-
 sci-chemistry/gromacs/gromacs-2023.2.ebuild| 2 +-
 sci-chemistry/gromacs/gromacs-2023..ebuild | 2 +-
 sci-chemistry/gromacs/gromacs-.ebuild  | 2 +-
 10 files changed, 10 insertions(+), 10 deletions(-)

diff --git a/sci-chemistry/gromacs/gromacs-2020.7-r1.ebuild 
b/sci-chemistry/gromacs/gromacs-2020.7-r1.ebuild
index fa307d1e2a3a..deddfa2607d8 100644
--- a/sci-chemistry/gromacs/gromacs-2020.7-r1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2020.7-r1.ebuild
@@ -5,7 +5,7 @@ EAPI=8
 
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
-PYTHON_COMPAT=( python3_{9..11} )
+PYTHON_COMPAT=( python3_{10..11} )
 
 DISTUTILS_OPTIONAL=1
 DISTUTILS_USE_PEP517=no

diff --git a/sci-chemistry/gromacs/gromacs-2021.6.ebuild 
b/sci-chemistry/gromacs/gromacs-2021.6.ebuild
index a81800552ba1..f22757c7a054 100644
--- a/sci-chemistry/gromacs/gromacs-2021.6.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2021.6.ebuild
@@ -5,7 +5,7 @@ EAPI=8
 
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
-PYTHON_COMPAT=( python3_{9..11} )
+PYTHON_COMPAT=( python3_{10..11} )
 
 DISTUTILS_OPTIONAL=1
 DISTUTILS_USE_PEP517=no

diff --git a/sci-chemistry/gromacs/gromacs-2021.7-r1.ebuild 
b/sci-chemistry/gromacs/gromacs-2021.7-r1.ebuild
index 54e14ae80f3a..63f1ff82b83b 100644
--- a/sci-chemistry/gromacs/gromacs-2021.7-r1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2021.7-r1.ebuild
@@ -5,7 +5,7 @@ EAPI=8
 
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
-PYTHON_COMPAT=( python3_{9..11} )
+PYTHON_COMPAT=( python3_{10..11} )
 
 DISTUTILS_OPTIONAL=1
 DISTUTILS_USE_PEP517=no

diff --git a/sci-chemistry/gromacs/gromacs-2022.5-r1.ebuild 
b/sci-chemistry/gromacs/gromacs-2022.5-r1.ebuild
index 1f3dfd9ef14c..45b0137cb890 100644
--- a/sci-chemistry/gromacs/gromacs-2022.5-r1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2022.5-r1.ebuild
@@ -5,7 +5,7 @@ EAPI=8
 
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
-PYTHON_COMPAT=( python3_{9..11} )
+PYTHON_COMPAT=( python3_{10..11} )
 
 DISTUTILS_OPTIONAL=1
 DISTUTILS_USE_PEP517=no

diff --git a/sci-chemistry/gromacs/gromacs-2022.6.ebuild 
b/sci-chemistry/gromacs/gromacs-2022.6.ebuild
index 1f3dfd9ef14c..45b0137cb890 100644
--- a/sci-chemistry/gromacs/gromacs-2022.6.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2022.6.ebuild
@@ -5,7 +5,7 @@ EAPI=8
 
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
-PYTHON_COMPAT=( python3_{9..11} )
+PYTHON_COMPAT=( python3_{10..11} )
 
 DISTUTILS_OPTIONAL=1
 DISTUTILS_USE_PEP517=no

diff --git a/sci-chemistry/gromacs/gromacs-2022..ebuild 
b/sci-chemistry/gromacs/gromacs-2022..ebuild
index 1f3dfd9ef14c..45b0137cb890 100644
--- a/sci-chemistry/gromacs/gromacs-2022..ebuild
+++ b/sci-chemistry/gromacs/gromacs-2022..ebuild
@@ -5,7 +5,7 @@ EAPI=8
 
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
-PYTHON_COMPAT=( python3_{9..11} )
+PYTHON_COMPAT=( python3_{10..11} )
 
 DISTUTILS_OPTIONAL=1
 DISTUTILS_USE_PEP517=no

diff --git a/sci-chemistry/gromacs/gromacs-2023.1-r1.ebuild 
b/sci-chemistry/gromacs/gromacs-2023.1-r1.ebuild
index fa386437a224..6df45cd2e2cb 100644
--- a/sci-chemistry/gromacs/gromacs-2023.1-r1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2023.1-r1.ebuild
@@ -5,7 +5,7 @@ EAPI=8
 
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
-PYTHON_COMPAT=( python3_{9..11} )
+PYTHON_COMPAT=( python3_{10..11} )
 
 DISTUTILS_OPTIONAL=1
 DISTUTILS_USE_PEP517=no

diff --git a/sci-chemistry/gromacs/gromacs-2023.2.ebuild 
b/sci-chemistry/gromacs/gromacs-2023.2.ebuild
index fa386437a224..6df45cd2e2cb 100644
--- a/sci-chemistry/gromacs/gromacs-2023.2.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2023.2.ebuild
@@ -5,7 +5,7 @@ EAPI=8
 
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
-PYTHON_COMPAT=( python3_{9..11} )
+PYTHON_COMPAT=( python3_{10..11} )
 
 DISTUTILS_OPTIONAL=1
 DISTUTILS_USE_PEP517=no

diff --git a/sci-chemistry/gromacs/gromacs-2023..ebuild 
b/sci-chemistry/gromacs/gromacs-2023..ebuild
index fa386437a224..6df45cd2e2cb 100644
--- a/sci-chemistry/gromacs/gromacs-2023..ebuild
+++ b/sci-chemistry/gromacs/gromacs-2023..ebuild
@@ -5,7 +5,7 @@ EAPI=8
 
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
-PYTHON_COMPAT=( python3_{9..11} )
+PYTHON_COMPAT=( python3_{10..11} )
 
 DISTUTILS_OPTIONAL=1
 DISTUTILS_USE_PEP517=no

diff -

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2023-11-01 Thread Alexey Shvetsov

commit: 092428835790462155e3d9090a7d1103a59ca809
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Wed Nov  1 07:38:49 2023 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Wed Nov  1 07:38:49 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=09242883

sci-chemistry/gromacs: Fix urls

Thanks to Andrey Alekseenko

Closes: https://bugs.gentoo.org/910639
Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/gromacs-2018.8-r2.ebuild | 2 +-
 sci-chemistry/gromacs/gromacs-2019.6-r3.ebuild | 2 +-
 sci-chemistry/gromacs/gromacs-2020.7-r1.ebuild | 6 +++---
 sci-chemistry/gromacs/gromacs-2021.6.ebuild| 6 +++---
 sci-chemistry/gromacs/gromacs-2021.7-r1.ebuild | 6 +++---
 sci-chemistry/gromacs/gromacs-2022.5-r1.ebuild | 6 +++---
 sci-chemistry/gromacs/gromacs-2022.6.ebuild| 6 +++---
 sci-chemistry/gromacs/gromacs-2022..ebuild | 6 +++---
 sci-chemistry/gromacs/gromacs-2023.1-r1.ebuild | 6 +++---
 sci-chemistry/gromacs/gromacs-2023.2.ebuild| 6 +++---
 sci-chemistry/gromacs/gromacs-2023..ebuild | 6 +++---
 sci-chemistry/gromacs/gromacs-.ebuild  | 6 +++---
 12 files changed, 32 insertions(+), 32 deletions(-)

diff --git a/sci-chemistry/gromacs/gromacs-2018.8-r2.ebuild 
b/sci-chemistry/gromacs/gromacs-2018.8-r2.ebuild
index 47be575cee41..47501a7b9111 100644
--- a/sci-chemistry/gromacs/gromacs-2018.8-r2.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2018.8-r2.ebuild
@@ -231,7 +231,7 @@ src_install() {
 pkg_postinst() {
einfo
einfo  "Please read and cite gromacs related papers from list:"
-   einfo  "https://www.gromacs.org/Gromacs_papers;
+   einfo  "https://www.gromacs.org/articles.html;
einfo
readme.gentoo_print_elog
 }

diff --git a/sci-chemistry/gromacs/gromacs-2019.6-r3.ebuild 
b/sci-chemistry/gromacs/gromacs-2019.6-r3.ebuild
index d984f873f939..23b83523b057 100644
--- a/sci-chemistry/gromacs/gromacs-2019.6-r3.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2019.6-r3.ebuild
@@ -246,7 +246,7 @@ src_install() {
 pkg_postinst() {
einfo
einfo  "Please read and cite gromacs related papers from list:"
-   einfo  "https://www.gromacs.org/Gromacs_papers;
+   einfo  "https://www.gromacs.org/articles.html;
einfo
readme.gentoo_print_elog
 }

diff --git a/sci-chemistry/gromacs/gromacs-2020.7-r1.ebuild 
b/sci-chemistry/gromacs/gromacs-2020.7-r1.ebuild
index 21bdf25bd343..fa307d1e2a3a 100644
--- a/sci-chemistry/gromacs/gromacs-2020.7-r1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2020.7-r1.ebuild
@@ -17,7 +17,7 @@ if [[ ${PV} = ** ]]; then
EGIT_REPO_URI="
https://gitlab.com/gromacs/gromacs.git
https://github.com/gromacs/gromacs.git
-   git://git.gromacs.org/gromacs.git"
+   "
[[ ${PV} =  ]] && EGIT_BRANCH="master" || 
EGIT_BRANCH="release-${PV:0:4}"
inherit git-r3
 else
@@ -106,7 +106,7 @@ src_unpack() {
else
git-r3_src_unpack
if use test; then
-   
EGIT_REPO_URI="git://git.gromacs.org/regressiontests.git" \
+   
EGIT_REPO_URI="https://gitlab.com/gromacs/gromacs-regressiontests.git; \
EGIT_BRANCH="${EGIT_BRANCH}" \
EGIT_CHECKOUT_DIR="${WORKDIR}/regressiontests"\
git-r3_src_unpack
@@ -341,7 +341,7 @@ src_install() {
 pkg_postinst() {
einfo
einfo  "Please read and cite gromacs related papers from list:"
-   einfo  "https://www.gromacs.org/Gromacs_papers;
+   einfo  "https://www.gromacs.org/articles.html;
einfo
readme.gentoo_print_elog
 }

diff --git a/sci-chemistry/gromacs/gromacs-2021.6.ebuild 
b/sci-chemistry/gromacs/gromacs-2021.6.ebuild
index b385c1a52f04..a81800552ba1 100644
--- a/sci-chemistry/gromacs/gromacs-2021.6.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2021.6.ebuild
@@ -17,7 +17,7 @@ if [[ ${PV} = ** ]]; then
EGIT_REPO_URI="
https://gitlab.com/gromacs/gromacs.git
https://github.com/gromacs/gromacs.git
-   git://git.gromacs.org/gromacs.git"
+   "
[[ ${PV} =  ]] && EGIT_BRANCH="master" || 
EGIT_BRANCH="release-${PV:0:4}"
inherit git-r3
 else
@@ -106,7 +106,7 @@ src_unpack() {
else
git-r3_src_unpack
if use test; then
-   
EGIT_REPO_URI="git://git.gromacs.org/regressiontests.git" \
+   
EGIT_REPO_URI="https://gitlab.com/gromacs/gromacs-regressiontests.git; \
EGIT_BRANCH="${EGIT_BRANCH}" \
EGIT_CHECKOUT_DIR="${WORKDIR}/regressiontests"\

[gentoo-commits] repo/gentoo:master commit in: media-gfx/prusaslicer/

2023-10-24 Thread Alexey Shvetsov

commit: 864a3afe25cc83722526bd2cec62abe002c433af
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Tue Oct 24 20:58:23 2023 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Tue Oct 24 20:58:23 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=864a3afe

media-gfx/prusaslicer: add 2.6.1

Closes: https://bugs.gentoo.org/914756
Signed-off-by: Alexey Shvetsov  gentoo.org>

 media-gfx/prusaslicer/Manifest |  1 +
 media-gfx/prusaslicer/prusaslicer-2.6.1.ebuild | 88 ++
 2 files changed, 89 insertions(+)

diff --git a/media-gfx/prusaslicer/Manifest b/media-gfx/prusaslicer/Manifest
index 967e72f1d40f..e0b6484d7d81 100644
--- a/media-gfx/prusaslicer/Manifest
+++ b/media-gfx/prusaslicer/Manifest
@@ -1,2 +1,3 @@
 DIST prusaslicer-2.5.2.tar.gz 49039089 BLAKE2B 
f1489cac7f23977da30da130faab15336c0f31eee8f197804122e46e62e030a17baf97f744019673e3adc9aff7413380f5c0513fa3d9e3044d56c32d4c95e5b8
 SHA512 
7d17ce358f742ef44725b0b4160be3ddc522d2160d0b467589a1def82b2f478108e4934efb80feff043435b69fe7e81f18146277f67ec1819d9a0150fa9942a2
 DIST prusaslicer-2.6.0.tar.gz 56430180 BLAKE2B 
7d6a0344f558d5788676364262f9e2b878a01e199fa8c95cda87c801c84fd02d5fc9df5a16096d36ec2e02ea54c8189165d524d8e7f73f66526fba6e5c60e55b
 SHA512 
c6133f09ccee5c3c6f1e6e3aebfee749fb0138e830d93ed42b19063b89738162095fa7c017695643b736099750bb56d6bd8174f8bf18a6f0703811703bfb508c
+DIST prusaslicer-2.6.1.tar.gz 58479800 BLAKE2B 
d5bfe09a76c5e1e5d3f5fae350db27db61e1f90465db42b5573314c58d77c89d3c04e67b45c449374570b7c1a0ee13bf7984b011f751a71e3b1414759cc921e9
 SHA512 
2b04eeff4feca2afd560b2fb6a5bbdaae6cabed2180d1416f2e4c7c385a50f859ec334c864a737b7c09eb3fd88f80af68655a0ef25ce9216b16549b16b3020b0

diff --git a/media-gfx/prusaslicer/prusaslicer-2.6.1.ebuild 
b/media-gfx/prusaslicer/prusaslicer-2.6.1.ebuild
new file mode 100644
index ..6661c356d72e
--- /dev/null
+++ b/media-gfx/prusaslicer/prusaslicer-2.6.1.ebuild
@@ -0,0 +1,88 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+WX_GTK_VER="3.2-gtk3"
+MY_PN="PrusaSlicer"
+MY_PV="$(ver_rs 3 -)"
+
+inherit cmake wxwidgets xdg
+
+DESCRIPTION="A mesh slicer to generate G-code for fused-filament-fabrication 
(3D printers)"
+HOMEPAGE="https://www.prusa3d.com/prusaslicer/;
+SRC_URI="https://github.com/prusa3d/PrusaSlicer/archive/refs/tags/version_${MY_PV}.tar.gz
 -> ${P}.tar.gz"
+
+LICENSE="AGPL-3 Boost-1.0 GPL-2 LGPL-3 MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~x86"
+IUSE="test"
+
+RESTRICT="test"
+
+RDEPEND="
+   dev-cpp/eigen:3
+   dev-cpp/tbb:=
+   dev-libs/boost:=[nls]
+   dev-libs/cereal
+   dev-libs/expat
+   dev-libs/glib:2
+   dev-libs/gmp:=
+   dev-libs/mpfr:=
+   media-gfx/openvdb:=
+   net-misc/curl[adns]
+   media-libs/glew:0=
+   media-libs/libjpeg-turbo:=
+   media-libs/libpng:0=
+   media-libs/qhull:=
+   sci-libs/libigl
+   sci-libs/nlopt
+   sci-libs/opencascade:=
+   sci-mathematics/cgal:=
+   sys-apps/dbus
+   sys-libs/zlib:=
+   virtual/opengl
+   x11-libs/gtk+:3
+   >=x11-libs/wxGTK-3.2.2.1-r3:${WX_GTK_VER}[X,opengl]
+   media-libs/nanosvg:=
+"
+DEPEND="${RDEPEND}
+   media-libs/qhull[static-libs]
+"
+
+PATCHES=(
+   "${FILESDIR}/${PN}-2.6.0-libexpat-double-definition-fix.patch"
+   "${FILESDIR}/${PN}-2.6.0-disable-noisy-asserts.patch"
+   "${FILESDIR}/${PN}-2.6.0-dont-force-link-to-wayland-and-x11.patch"
+)
+
+S="${WORKDIR}/${MY_PN}-version_${MY_PV}"
+
+src_prepare() {
+   sed -i -e 
's/PrusaSlicer-${SLIC3R_VERSION}+UNKNOWN/PrusaSlicer-${SLIC3R_VERSION}+Gentoo/g'
 version.inc || die
+
+   sed -i -e 's/find_package(OpenCASCADE 7.6.2 
REQUIRED)/find_package(OpenCASCADE REQUIRED)/g' \
+   src/occt_wrapper/CMakeLists.txt || die
+   cmake_src_prepare
+}
+
+src_configure() {
+   CMAKE_BUILD_TYPE="Release"
+
+   setup-wxwidgets
+
+   local mycmakeargs=(
+   -DOPENVDB_FIND_MODULE_PATH="/usr/$(get_libdir)/cmake/OpenVDB"
+
+   -DSLIC3R_BUILD_TESTS=$(usex test)
+   -DSLIC3R_FHS=ON
+   -DSLIC3R_GTK=3
+   -DSLIC3R_GUI=ON
+   -DSLIC3R_PCH=OFF
+   -DSLIC3R_STATIC=OFF
+   -DSLIC3R_WX_STABLE=ON
+   -Wno-dev
+   )
+
+   cmake_src_configure
+}

[gentoo-commits] repo/gentoo:master commit in: dev-python/pika/

2023-10-14 Thread Alexey Shvetsov

commit: 699369ab69509a679fb48a682bcdba272dbae85c
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Sat Oct 14 06:24:33 2023 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Sat Oct 14 06:24:33 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=699369ab

dev-python/pika: add 1.3.2, drop 1.3.1

Closes: https://bugs.gentoo.org/906121
Signed-off-by: Alexey Shvetsov  gentoo.org>

 dev-python/pika/Manifest | 2 +-
 dev-python/pika/{pika-1.3.1.ebuild => pika-1.3.2.ebuild} | 0
 2 files changed, 1 insertion(+), 1 deletion(-)

diff --git a/dev-python/pika/Manifest b/dev-python/pika/Manifest
index b63cf1411ac3..257b429977e3 100644
--- a/dev-python/pika/Manifest
+++ b/dev-python/pika/Manifest
@@ -1 +1 @@
-DIST pika-1.3.1.gh.tar.gz 321628 BLAKE2B 
c473ec22dc20d0bdf87848b37dbca6d7c1a0581e23e89dbd6b7de382575133ae0c7db6ae505585297fd3253d948df35c74b801ff2a72c8e8cc5a53ddbfabcc48
 SHA512 
5b3b785f74cd11433198dfb9b423daae9f3acac6cee158638ac793d1bd575296d0d6425165f3f00338a65f89f48e1c2795725e7a4f791e815a5837b25c69ba46
+DIST pika-1.3.2.gh.tar.gz 323647 BLAKE2B 
30cd1154bd35708a29a924d6f0f646ebdd3737745ba588e5d56fd2ae6b2a138005352475b346738b5eea66adadedb0c50fa9411f659c4f6c6b81bc9bf048c7fb
 SHA512 
86c1c33db808274052cbe18af68bef685fafa260f692d16dcd3ce6259107c343ebdd3482713a7948583566581defa6037f3344d03b11c50458432d044d8b2057

diff --git a/dev-python/pika/pika-1.3.1.ebuild 
b/dev-python/pika/pika-1.3.2.ebuild
similarity index 100%
rename from dev-python/pika/pika-1.3.1.ebuild
rename to dev-python/pika/pika-1.3.2.ebuild

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/MDAnalysis/

2023-10-14 Thread Alexey Shvetsov

commit: 420e230bc8651f4c6dbc78a97fc9f6b9d26cf83c
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Sat Oct 14 06:17:11 2023 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Sat Oct 14 06:17:11 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=420e230b

sci-chemistry/MDAnalysis: add 2.6.1, drop 2.4.3

Signed-off-by: Alexey Shvetsov  gentoo.org>

 .../MDAnalysis/{MDAnalysis-2.4.3.ebuild => MDAnalysis-2.6.1.ebuild} | 0
 sci-chemistry/MDAnalysis/Manifest   | 2 +-
 2 files changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-chemistry/MDAnalysis/MDAnalysis-2.4.3.ebuild 
b/sci-chemistry/MDAnalysis/MDAnalysis-2.6.1.ebuild
similarity index 100%
rename from sci-chemistry/MDAnalysis/MDAnalysis-2.4.3.ebuild
rename to sci-chemistry/MDAnalysis/MDAnalysis-2.6.1.ebuild

diff --git a/sci-chemistry/MDAnalysis/Manifest 
b/sci-chemistry/MDAnalysis/Manifest
index b24016480d20..7a670797adfa 100644
--- a/sci-chemistry/MDAnalysis/Manifest
+++ b/sci-chemistry/MDAnalysis/Manifest
@@ -1 +1 @@
-DIST MDAnalysis-2.4.3.tar.gz 3747565 BLAKE2B 
733be78aa3e57e8bbb9c291606a86d9100cb904cc587fa3e44c4205596b4da7eb5c2247388655dcd145b45ca6ecb47a3f95d7d659d029232d1febd2ebc99ab51
 SHA512 
0870bc392ef8b8fbae68cf60d1df2f5d413f4d1235ca795421061fd32a8fe97867d5bd610288237a59d1075f31cc43d281ab2f1e7e8bb0767dac7d278b8453d8
+DIST MDAnalysis-2.6.1.tar.gz 4173280 BLAKE2B 
14aae62733ace3eff686f6ba6be8326f86ba24c55e3870aa2e5dd88a858ca0de8d89589a622687bec3aafd332d9ccb5d6e6166eb370f56eaf79af5081f3a003e
 SHA512 
421a27e508bcf7845b0c91f40c01bba4a48bf8ba9a3d3ed50fe555336c96fb1f64bccc5cf3ee048130d2eef9b18b8550ed5f73d3459f8962343ba694d00655bb

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2023-07-13 Thread Alexey Shvetsov

commit: ceb0349f3f4f0a40f6b279ffc6ffc3a6451d0398
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Thu Jul 13 11:04:45 2023 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Jul 13 11:04:45 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ceb0349f

sci-chemistry/gromacs: add 2022.6

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/Manifest  |   3 +
 sci-chemistry/gromacs/gromacs-2022.6.ebuild | 333 
 2 files changed, 336 insertions(+)

diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest
index 978525436fff..2e715fb4bb10 100644
--- a/sci-chemistry/gromacs/Manifest
+++ b/sci-chemistry/gromacs/Manifest
@@ -4,6 +4,7 @@ DIST gromacs-2020.7.tar.gz 29175554 BLAKE2B 
98f1aa415946f8eb113febc81105f0c1b091
 DIST gromacs-2021.6.tar.gz 38012702 BLAKE2B 
023ae37dc53643758afa050fd179cd66f3c6d6266f6afceee5eb35c890a3ae284956f2bc2409156d6e1fa03a7f23f7b04c27e1820547fd5f147b344d94da7d40
 SHA512 
65d7874e5cd838ce4f29d033c66304738ccc30f1987f9f8541725058b2fc4551302a399f6ce773e81ac9485963187c48feaf92c71789f4c345c82bd335f806a7
 DIST gromacs-2021.7.tar.gz 38028032 BLAKE2B 
2dc1b15ca8692ca5cf4ad1c7a266b9e2ced064d34a63cef61fea69e48231dd0310cfd8484d29c56cdb599f795d7655959f40038ac933b46ad2841d57bf2b3646
 SHA512 
ca478533da3bcb377fda30682660db8eb13beef6456fac6013a1a97ec3be60b5594567412e1e2a31392e484f9a40a22da1f12336f4738cf0422ff4f3e8814609
 DIST gromacs-2022.5.tar.gz 40362776 BLAKE2B 
e77c96cd995fb6c8284bcf9728e2f95e265911f643c69d00cc5910c6d22ada41293a1cb74033e708957776551b253453f64dba46497d68b2f73c675e94f30ddd
 SHA512 
79310d6fd39a160e7bbc661a04540c9bcb89f40c133d1031ca16998ef0a67fc4a023f57950b22793f0c91b5fe47fd78cb2e7afedb50fe9251b1c920c9267344d
+DIST gromacs-2022.6.tar.gz 40330705 BLAKE2B 
fdafbd5b2a92d6022dec3e79e961fef220f1eba42850916e7cb70ef459a8d9c6ebc8c1bbe3c105f5b23161dd5c552ec00505d7c0036649b782cf52c311498743
 SHA512 
91217394f534ca8f78f73189059712e1c2cd354b658722f23768b12748f7bfaf1a5e95227c5ed1b69c1a9b72c3174e9600a712c157ea2f27156387efb823dd67
 DIST gromacs-2023.1.tar.gz 41934072 BLAKE2B 
6d04642ba37a8563fafc10e0be83e33aab5ce25ef43ec2c9555e84328096bbe61426558a1433b086028f3c6637a5b3ae82241e67f206c0dd0b5254f5ec27ae4c
 SHA512 
4bddbbc56f26487db9d35f371d65725289d1355dc4c295d32698499e05eb74e31d4db579fc1f665edb55a68b002bddacf37c0f05d3f970bc149990d434b1
 DIST manual-2018.8.pdf 10025023 BLAKE2B 
afb0a6e6a72d78df743fcb57e7c1716848589e571dd35167b957a9b407ca27978ccfb6cb9e0df9c9439b888f352501a00ba32281ed1e0b4193bd606f1d77152e
 SHA512 
b1972f7ce965bfc9377542993c5943ea4868a8ed23a969d4203264746d6bea3a7a65c6379196ece37fd6d68ec7ec80f827bde87d1049284af7082759a124f1d5
 DIST manual-2019.6.pdf 12702376 BLAKE2B 
c350127bc06a9eb3dee73da39037c84daeb89500e23cb131bd19a150bf60602d4dde7611e0c6f0f344af4093e96a899303dac71b4df56fd0c44c3a48a56606b7
 SHA512 
dfdff67c2c1c9ce1f1c236b7686c5331b0fe86951da6c98eddd6a3e748815e0be0a9653ae4318469fcdd913c4e7c355d64a997cc80b9d9fbe6282ef6d98e61eb
@@ -11,6 +12,7 @@ DIST manual-2020.7.pdf 11850780 BLAKE2B 
38594e87993badfbbcf47d6010a7f67d3c3426da
 DIST manual-2021.6.pdf 12256595 BLAKE2B 
5d808e38571b38c1f6e0d115f6e604238206cc001f59d05ed855e80c324c0e6fd7767adb723b3d0edd1267ae5973a3b83b76bd04d2dc99769e6440600d8e2146
 SHA512 
64fe56422d7417f6f61b10346c99e24c3f423f0cedc3794e0809250282bc87ef692b47ae6c3f95ad7994aa3860ed82035cbacc76eb78a2f54a29052a05260af2
 DIST manual-2021.7.pdf 12256526 BLAKE2B 
6f298d7dac142f66914bbc2ea7d6ca70c4aeafaf33ccf12336d5cec64b1f1097b5332c767bb411ccef706ec6184479a84bcf59bda21c4249d45d8ce3dea08e79
 SHA512 
197765accb8ab6c5f1cc94b2697ff1817e157d85fa231dfe36a85036076e04da2a8035de66aba4f46c6dd7f553176357b94c92e1da5d1dabc574c627deee5279
 DIST manual-2022.5.pdf 13081119 BLAKE2B 
7a0ffd086d98527d42da4a22984d8351ad7861e32951e8b65c88e7d0df1559303750886ae31a7c158b4e22f616f6dd5deed9a63b0ed114bb1e0adfda9350a487
 SHA512 
707869ee6052f1b7f75376b0f78fcc4859035234957cc740bd770ea3bea3a591f7fc1fbc0b8526baab48eebfa506d03927df94ddc9c412c75dc2f2864574dd82
+DIST manual-2022.6.pdf 13081140 BLAKE2B 
e7ae3f23ddc076c295be2c464fe2177d6d6848d070ee5eba2b572e996ae08adead898ec6432b123802907f64983aa4d2e17426be8d540c48d12398a479519f9e
 SHA512 
4724888b3c33c4fa4a035d5fb2f8c51496f67e1ee312676510d5ba74bc3cc1571e71e84464585b87ad0133e8e736343ae382bf8f7b556633f86a99560213d271
 DIST manual-2023.1.pdf 13526498 BLAKE2B 
a9aabcb722954c9c83a8f5945c85e634b0b82ace8b9b077c3f2b9ff432ca71d3e2d5ca2dd52d6ce489d77d3d4ca7b41d75e5566205bb8855caa650fa2722e5ec
 SHA512 
b6ca6c822ac5b3cbe3c84d8fd51d3ed465268c00bb5f96e2afa557d45f9c534b0de278f33a0fdf43080c9c619344b98cd71847e17b297a789eec4c8b42dea7b2
 DIST regressiontests-2018.8.tar.gz 67855469 BLAKE2B 
34c9b339f6229f483afbb5192ee6ba8b8f72d5c26907a853af9c53dfece0d88739e48f6b44b78d1c010f988f9385d077285300522164f533a5861e9dda879275
 SHA512 
3642389d27bd1942cd0f091c940ae97b197b94856a387fe581dc516b0d4169480f16551d4ba357f9282b3337d605c286d51dd38112ac87c826dda63490483

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2023-07-13 Thread Alexey Shvetsov

commit: 271798ebe1576910d96885d1ffd981791d5f54f1
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Thu Jul 13 11:05:18 2023 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Jul 13 11:05:18 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=271798eb

sci-chemistry/gromacs: add 2023.2

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/Manifest  |   3 +
 sci-chemistry/gromacs/gromacs-2023.2.ebuild | 335 
 2 files changed, 338 insertions(+)

diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest
index 2e715fb4bb10..807a9d5c7481 100644
--- a/sci-chemistry/gromacs/Manifest
+++ b/sci-chemistry/gromacs/Manifest
@@ -6,6 +6,7 @@ DIST gromacs-2021.7.tar.gz 38028032 BLAKE2B 
2dc1b15ca8692ca5cf4ad1c7a266b9e2ced0
 DIST gromacs-2022.5.tar.gz 40362776 BLAKE2B 
e77c96cd995fb6c8284bcf9728e2f95e265911f643c69d00cc5910c6d22ada41293a1cb74033e708957776551b253453f64dba46497d68b2f73c675e94f30ddd
 SHA512 
79310d6fd39a160e7bbc661a04540c9bcb89f40c133d1031ca16998ef0a67fc4a023f57950b22793f0c91b5fe47fd78cb2e7afedb50fe9251b1c920c9267344d
 DIST gromacs-2022.6.tar.gz 40330705 BLAKE2B 
fdafbd5b2a92d6022dec3e79e961fef220f1eba42850916e7cb70ef459a8d9c6ebc8c1bbe3c105f5b23161dd5c552ec00505d7c0036649b782cf52c311498743
 SHA512 
91217394f534ca8f78f73189059712e1c2cd354b658722f23768b12748f7bfaf1a5e95227c5ed1b69c1a9b72c3174e9600a712c157ea2f27156387efb823dd67
 DIST gromacs-2023.1.tar.gz 41934072 BLAKE2B 
6d04642ba37a8563fafc10e0be83e33aab5ce25ef43ec2c9555e84328096bbe61426558a1433b086028f3c6637a5b3ae82241e67f206c0dd0b5254f5ec27ae4c
 SHA512 
4bddbbc56f26487db9d35f371d65725289d1355dc4c295d32698499e05eb74e31d4db579fc1f665edb55a68b002bddacf37c0f05d3f970bc149990d434b1
+DIST gromacs-2023.2.tar.gz 41930578 BLAKE2B 
ee115ba45711867ced4ad08cede0e87dffd7c4e7a45ff3ee0c06b2f46b0dec838e4b532e092ce3abd993e231ca7d517d9941b371fd6d9d64d581862dc67c449c
 SHA512 
9bc17f310e6be6fd51b7c07bde0b58e8fa15085b2c073eb7bed0db917646586dee5d7cf9b4b178e9b4cedd40d4bcd967edcc4b26debaec6f4ca94399b13b9186
 DIST manual-2018.8.pdf 10025023 BLAKE2B 
afb0a6e6a72d78df743fcb57e7c1716848589e571dd35167b957a9b407ca27978ccfb6cb9e0df9c9439b888f352501a00ba32281ed1e0b4193bd606f1d77152e
 SHA512 
b1972f7ce965bfc9377542993c5943ea4868a8ed23a969d4203264746d6bea3a7a65c6379196ece37fd6d68ec7ec80f827bde87d1049284af7082759a124f1d5
 DIST manual-2019.6.pdf 12702376 BLAKE2B 
c350127bc06a9eb3dee73da39037c84daeb89500e23cb131bd19a150bf60602d4dde7611e0c6f0f344af4093e96a899303dac71b4df56fd0c44c3a48a56606b7
 SHA512 
dfdff67c2c1c9ce1f1c236b7686c5331b0fe86951da6c98eddd6a3e748815e0be0a9653ae4318469fcdd913c4e7c355d64a997cc80b9d9fbe6282ef6d98e61eb
 DIST manual-2020.7.pdf 11850780 BLAKE2B 
38594e87993badfbbcf47d6010a7f67d3c3426dab85e1462916b4d62be27b5764953f912cf2b71ee24877e0bfa27b3f74431da2da81b4977d58cb66b2cc795a3
 SHA512 
4f184f2c90e0bac01a48069cc546cd5b04fa5f543f90dd2d68c6d17be278152fd09456b6a6c5c8236f8fb85a174d6ec7a1c7b44d437b4e6fea5d0ada73cec0f6
@@ -14,6 +15,7 @@ DIST manual-2021.7.pdf 12256526 BLAKE2B 
6f298d7dac142f66914bbc2ea7d6ca70c4aeafaf
 DIST manual-2022.5.pdf 13081119 BLAKE2B 
7a0ffd086d98527d42da4a22984d8351ad7861e32951e8b65c88e7d0df1559303750886ae31a7c158b4e22f616f6dd5deed9a63b0ed114bb1e0adfda9350a487
 SHA512 
707869ee6052f1b7f75376b0f78fcc4859035234957cc740bd770ea3bea3a591f7fc1fbc0b8526baab48eebfa506d03927df94ddc9c412c75dc2f2864574dd82
 DIST manual-2022.6.pdf 13081140 BLAKE2B 
e7ae3f23ddc076c295be2c464fe2177d6d6848d070ee5eba2b572e996ae08adead898ec6432b123802907f64983aa4d2e17426be8d540c48d12398a479519f9e
 SHA512 
4724888b3c33c4fa4a035d5fb2f8c51496f67e1ee312676510d5ba74bc3cc1571e71e84464585b87ad0133e8e736343ae382bf8f7b556633f86a99560213d271
 DIST manual-2023.1.pdf 13526498 BLAKE2B 
a9aabcb722954c9c83a8f5945c85e634b0b82ace8b9b077c3f2b9ff432ca71d3e2d5ca2dd52d6ce489d77d3d4ca7b41d75e5566205bb8855caa650fa2722e5ec
 SHA512 
b6ca6c822ac5b3cbe3c84d8fd51d3ed465268c00bb5f96e2afa557d45f9c534b0de278f33a0fdf43080c9c619344b98cd71847e17b297a789eec4c8b42dea7b2
+DIST manual-2023.2.pdf 13547562 BLAKE2B 
17155c82d968003706f974e2fb513dced28987e4630c455674d4088dcb827136e2b7b66836a2bf7f9be472254c11ab4ec98cace1462e85a7a18b0f1eb1760781
 SHA512 
b8026422fb367bf58d6ddb727afe2f1b208c9abb4eb513d85d395a19a82a7fcf362390f4ae5718fa17b0aeb7bf2c90567f40913fdc3cfc51c63d3757ab5a4905
 DIST regressiontests-2018.8.tar.gz 67855469 BLAKE2B 
34c9b339f6229f483afbb5192ee6ba8b8f72d5c26907a853af9c53dfece0d88739e48f6b44b78d1c010f988f9385d077285300522164f533a5861e9dda879275
 SHA512 
3642389d27bd1942cd0f091c940ae97b197b94856a387fe581dc516b0d4169480f16551d4ba357f9282b3337d605c286d51dd38112ac87c826dda634904836bb
 DIST regressiontests-2019.6.tar.gz 67643195 BLAKE2B 
1e054e24b187946f7ea28090d4f20cf8e1d79a26253f57ba07d130e0773d8541b8a1552a38023d31a68ce8bc62d8e0af1d98609234bb3e7d3e6d567307ebb386
 SHA512 
eacf1c55b982515a305c29459fe80a7cd558a8481e5689962aa956148af542568b1d1ce59c6784ecb0afd4768c2b664afa21e12af2d89ae2b06b1ba

[gentoo-commits] repo/gentoo:master commit in: eclass/

2023-07-03 Thread Alexey Shvetsov

commit: 0cfe2886deb604c98c24d541b1e468a1400b48de
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Mon Jul  3 11:34:27 2023 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Mon Jul  3 13:51:42 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0cfe2886

eclass/kernel-build.eclass: riscv also need dtbs

Signed-off-by: Alexey Shvetsov  gentoo.org>

 eclass/kernel-build.eclass | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/eclass/kernel-build.eclass b/eclass/kernel-build.eclass
index 963e020b3746..2123f165846a 100644
--- a/eclass/kernel-build.eclass
+++ b/eclass/kernel-build.eclass
@@ -188,7 +188,7 @@ kernel-build_src_test() {
debug-print-function ${FUNCNAME} "${@}"
local targets=( modules_install )
# on arm or arm64 you also need dtb
-   if use arm || use arm64; then
+   if use arm || use arm64 || use riscv; then
targets+=( dtbs_install )
fi
 
@@ -216,7 +216,7 @@ kernel-build_src_install() {
# on what kind of installkernel is installed
local targets=( modules_install )
# on arm or arm64 you also need dtb
-   if use arm || use arm64; then
+   if use arm || use arm64 || use riscv; then
targets+=( dtbs_install )
fi

[gentoo-commits] repo/gentoo:master commit in: eclass/

2023-07-03 Thread Alexey Shvetsov

commit: 2a0dca499f38a1f9f6f16076231376dbb1be64aa
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Mon Jul  3 11:35:33 2023 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Mon Jul  3 13:51:48 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=2a0dca49

eclass/kernel-build.eclass: should depend on dtc for arm* and riscv

Signed-off-by: Alexey Shvetsov  gentoo.org>

 eclass/kernel-build.eclass | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/eclass/kernel-build.eclass b/eclass/kernel-build.eclass
index 2123f165846a..0c8eaf3c1cd5 100644
--- a/eclass/kernel-build.eclass
+++ b/eclass/kernel-build.eclass
@@ -39,6 +39,9 @@ BDEPEND="
sys-devel/flex
virtual/libelf
app-alternatives/yacc
+   arm? ( sys-apps/dtc )
+   arm64? ( sys-apps/dtc )
+   riscv? ( sys-apps/dtc )
 "
 
 IUSE="+strip"

[gentoo-commits] repo/gentoo:master commit in: dev-python/sphinx-argparse/

2023-06-29 Thread Alexey Shvetsov

commit: 8d3a79ce9688a74a4ca8b861212223794d213dff
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Wed Jun 28 14:30:56 2023 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Jun 29 06:47:43 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8d3a79ce

dev-python/sphinx-argparse: new package, add 0.4.0

Signed-off-by: Alexey Shvetsov  gentoo.org>

 dev-python/sphinx-argparse/Manifest|  1 +
 dev-python/sphinx-argparse/metadata.xml| 12 
 .../sphinx-argparse/sphinx-argparse-0.4.0.ebuild   | 22 ++
 3 files changed, 35 insertions(+)

diff --git a/dev-python/sphinx-argparse/Manifest 
b/dev-python/sphinx-argparse/Manifest
new file mode 100644
index ..78929c27d15f
--- /dev/null
+++ b/dev-python/sphinx-argparse/Manifest
@@ -0,0 +1 @@
+DIST sphinx_argparse-0.4.0.tar.gz 15020 BLAKE2B 
73118f56ff82d52f04066b9d500aebc77eb5a0fecd03fa69f382c0f2afc0cbffdd395da707cf37b59f039e93935f8d5c3fe0e0f7a2820d3b6509dd78b37b0d74
 SHA512 
b96050da6c02f87c54f9dc9146bed955e99258df740b467575a2b3e9919fa8c4c6d30a736dab24360086bfc0d7d09c4bc7a818700af2c7846eed3a3b99053d65

diff --git a/dev-python/sphinx-argparse/metadata.xml 
b/dev-python/sphinx-argparse/metadata.xml
new file mode 100644
index ..34557e466493
--- /dev/null
+++ b/dev-python/sphinx-argparse/metadata.xml
@@ -0,0 +1,12 @@
+
+http://www.gentoo.org/dtd/metadata.dtd;>
+
+   
+   s...@gentoo.org
+   Gentoo Science Project
+   
+   
+   ashb/sphinx-argparse
+   sphinx-argparse
+   
+

diff --git a/dev-python/sphinx-argparse/sphinx-argparse-0.4.0.ebuild 
b/dev-python/sphinx-argparse/sphinx-argparse-0.4.0.ebuild
new file mode 100644
index ..2b28e7ab59e5
--- /dev/null
+++ b/dev-python/sphinx-argparse/sphinx-argparse-0.4.0.ebuild
@@ -0,0 +1,22 @@
+# Copyright 2020-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{10..12} )
+DISTUTILS_USE_PEP517=poetry
+inherit distutils-r1 pypi
+
+DESCRIPTION="Sphinx extension that automatically documents argparse commands 
and options"
+HOMEPAGE="https://pypi.org/project/sphinx-argparse/;
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~x86"
+
+RDEPEND="
+   dev-python/sphinx[${PYTHON_USEDEP}]
+   dev-python/commonmark[${PYTHON_USEDEP}]
+"
+
+distutils_enable_tests pytest

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2023-06-29 Thread Alexey Shvetsov

commit: ba63fa560b2a404744b3113ec03b9a4523ddf7a7
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Wed Jun 28 14:32:03 2023 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Jun 29 06:47:44 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ba63fa56

sci-chemistry/gromacs: Fix docs build for pdf manual

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/gromacs-2023.1.ebuild| 4 
 sci-chemistry/gromacs/gromacs-2023..ebuild | 4 
 sci-chemistry/gromacs/gromacs-2023.ebuild  | 4 
 sci-chemistry/gromacs/gromacs-.ebuild  | 4 
 4 files changed, 16 insertions(+)

diff --git a/sci-chemistry/gromacs/gromacs-2023.1.ebuild 
b/sci-chemistry/gromacs/gromacs-2023.1.ebuild
index 98c909cdab48..f57ac5829eb7 100644
--- a/sci-chemistry/gromacs/gromacs-2023.1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2023.1.ebuild
@@ -61,6 +61,10 @@ BDEPEND="${CDEPEND}
app-doc/doxygen
$(python_gen_cond_dep '
dev-python/sphinx[${PYTHON_USEDEP}]
+   dev-python/sphinx-copybutton[${PYTHON_USEDEP}]
+   dev-python/sphinx-inline-tabs[${PYTHON_USEDEP}]
+   dev-python/sphinx-argparse[${PYTHON_USEDEP}]
+   dev-python/sphinxcontrib-autoprogram[${PYTHON_USEDEP}]
')
media-gfx/mscgen
media-gfx/graphviz

diff --git a/sci-chemistry/gromacs/gromacs-2023..ebuild 
b/sci-chemistry/gromacs/gromacs-2023..ebuild
index 98c909cdab48..f57ac5829eb7 100644
--- a/sci-chemistry/gromacs/gromacs-2023..ebuild
+++ b/sci-chemistry/gromacs/gromacs-2023..ebuild
@@ -61,6 +61,10 @@ BDEPEND="${CDEPEND}
app-doc/doxygen
$(python_gen_cond_dep '
dev-python/sphinx[${PYTHON_USEDEP}]
+   dev-python/sphinx-copybutton[${PYTHON_USEDEP}]
+   dev-python/sphinx-inline-tabs[${PYTHON_USEDEP}]
+   dev-python/sphinx-argparse[${PYTHON_USEDEP}]
+   dev-python/sphinxcontrib-autoprogram[${PYTHON_USEDEP}]
')
media-gfx/mscgen
media-gfx/graphviz

diff --git a/sci-chemistry/gromacs/gromacs-2023.ebuild 
b/sci-chemistry/gromacs/gromacs-2023.ebuild
index 98c909cdab48..f57ac5829eb7 100644
--- a/sci-chemistry/gromacs/gromacs-2023.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2023.ebuild
@@ -61,6 +61,10 @@ BDEPEND="${CDEPEND}
app-doc/doxygen
$(python_gen_cond_dep '
dev-python/sphinx[${PYTHON_USEDEP}]
+   dev-python/sphinx-copybutton[${PYTHON_USEDEP}]
+   dev-python/sphinx-inline-tabs[${PYTHON_USEDEP}]
+   dev-python/sphinx-argparse[${PYTHON_USEDEP}]
+   dev-python/sphinxcontrib-autoprogram[${PYTHON_USEDEP}]
')
media-gfx/mscgen
media-gfx/graphviz

diff --git a/sci-chemistry/gromacs/gromacs-.ebuild 
b/sci-chemistry/gromacs/gromacs-.ebuild
index 98c909cdab48..f57ac5829eb7 100644
--- a/sci-chemistry/gromacs/gromacs-.ebuild
+++ b/sci-chemistry/gromacs/gromacs-.ebuild
@@ -61,6 +61,10 @@ BDEPEND="${CDEPEND}
app-doc/doxygen
$(python_gen_cond_dep '
dev-python/sphinx[${PYTHON_USEDEP}]
+   dev-python/sphinx-copybutton[${PYTHON_USEDEP}]
+   dev-python/sphinx-inline-tabs[${PYTHON_USEDEP}]
+   dev-python/sphinx-argparse[${PYTHON_USEDEP}]
+   dev-python/sphinxcontrib-autoprogram[${PYTHON_USEDEP}]
')
media-gfx/mscgen
media-gfx/graphviz

[gentoo-commits] repo/gentoo:master commit in: dev-python/sphinxcontrib-autoprogram/

2023-06-29 Thread Alexey Shvetsov

commit: cedfe00e7ad394b149f2f5f9efb1b05f8e63228d
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Wed Jun 28 14:31:21 2023 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Jun 29 06:47:44 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=cedfe00e

dev-python/sphinxcontrib-autoprogram: keyword 0.1.8 for ~arm64

Signed-off-by: Alexey Shvetsov  gentoo.org>

 .../sphinxcontrib-autoprogram/sphinxcontrib-autoprogram-0.1.8.ebuild| 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git 
a/dev-python/sphinxcontrib-autoprogram/sphinxcontrib-autoprogram-0.1.8.ebuild 
b/dev-python/sphinxcontrib-autoprogram/sphinxcontrib-autoprogram-0.1.8.ebuild
index db8164e96833..115a4f879a5d 100644
--- 
a/dev-python/sphinxcontrib-autoprogram/sphinxcontrib-autoprogram-0.1.8.ebuild
+++ 
b/dev-python/sphinxcontrib-autoprogram/sphinxcontrib-autoprogram-0.1.8.ebuild
@@ -17,7 +17,7 @@ HOMEPAGE="
 
 LICENSE="BSD-2"
 SLOT="0"
-KEYWORDS="~amd64 ~x86"
+KEYWORDS="~amd64 ~arm64 ~x86"
 
 RDEPEND="
dev-python/sphinx[${PYTHON_USEDEP}]

[gentoo-commits] repo/gentoo:master commit in: dev-python/sphinx-copybutton/

2023-06-29 Thread Alexey Shvetsov

commit: 752cf8b31a347959e9ad0d06e26fde7181f98c0c
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Wed Jun 28 14:29:16 2023 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Jun 29 06:47:37 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=752cf8b3

dev-python/sphinx-copybutton: new package, add 0.5.2

Signed-off-by: Alexey Shvetsov  gentoo.org>

 dev-python/sphinx-copybutton/Manifest  |  1 +
 dev-python/sphinx-copybutton/metadata.xml  | 15 +++
 .../sphinx-copybutton-0.5.2.ebuild | 22 ++
 3 files changed, 38 insertions(+)

diff --git a/dev-python/sphinx-copybutton/Manifest 
b/dev-python/sphinx-copybutton/Manifest
new file mode 100644
index ..2a1ecd3b7d6a
--- /dev/null
+++ b/dev-python/sphinx-copybutton/Manifest
@@ -0,0 +1 @@
+DIST sphinx-copybutton-0.5.2.tar.gz 23039 BLAKE2B 
5a440865610dbcfc8abc8a10c38832439d5f588a26a8641374cada3cc181a0ba2a19e62b287a296c1879f25342ce8aae1ade080126f837e5ad9291c152a30c6e
 SHA512 
83f61526d8a20f70b0de63a5bad89ed4ae4f3cf5cd589f1a1e2e91f08f4d45a05acf780a4cf3703d4490ab93c9c9bb18c11d3170b8011c2254aab0334940ab2d

diff --git a/dev-python/sphinx-copybutton/metadata.xml 
b/dev-python/sphinx-copybutton/metadata.xml
new file mode 100644
index ..343dee9179fb
--- /dev/null
+++ b/dev-python/sphinx-copybutton/metadata.xml
@@ -0,0 +1,15 @@
+
+https://www.gentoo.org/dtd/metadata.dtd;>
+
+   
+   ale...@gentoo.org
+       Alexey Shvetsov
+   
+   
+   
+   executablebooks/sphinx-copybutton
+   sphinx-copybutton
+   https://sphinx-copybutton.readthedocs.io
+   
https://github.com/executablebooks/sphinx-copybutton/issues
+   
+

diff --git a/dev-python/sphinx-copybutton/sphinx-copybutton-0.5.2.ebuild 
b/dev-python/sphinx-copybutton/sphinx-copybutton-0.5.2.ebuild
new file mode 100644
index ..297c59d28f0d
--- /dev/null
+++ b/dev-python/sphinx-copybutton/sphinx-copybutton-0.5.2.ebuild
@@ -0,0 +1,22 @@
+# Copyright 2022-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+PYPI_NO_NORMALIZE=1
+DISTUTILS_USE_PEP517=setuptools
+PYTHON_COMPAT=( python3_{10..12} )
+
+inherit distutils-r1 pypi
+
+DESCRIPTION="A small sphinx extension to add a \"copy\" button to code blocks"
+HOMEPAGE="https://pypi.org/project/sphinx-copybutton/;
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~x86"
+
+RDEPEND="
+   >=dev-python/sphinx-6.0[${PYTHON_USEDEP}]
+"
+
+distutils_enable_tests pytest

[gentoo-commits] repo/gentoo:master commit in: dev-python/sphinx-inline-tabs/

2023-06-29 Thread Alexey Shvetsov

commit: a152a22d027b130282d8ab5efcd9baa046bf1d97
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Wed Jun 28 14:30:31 2023 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Jun 29 06:47:43 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a152a22d

dev-python/sphinx-inline-tabs: new package, add 2023.4.21

Signed-off-by: Alexey Shvetsov  gentoo.org>

 dev-python/sphinx-inline-tabs/Manifest  |  1 +
 dev-python/sphinx-inline-tabs/metadata.xml  | 15 +++
 .../sphinx-inline-tabs-2023.4.21.ebuild | 21 +
 3 files changed, 37 insertions(+)

diff --git a/dev-python/sphinx-inline-tabs/Manifest 
b/dev-python/sphinx-inline-tabs/Manifest
new file mode 100644
index ..d45863abca58
--- /dev/null
+++ b/dev-python/sphinx-inline-tabs/Manifest
@@ -0,0 +1 @@
+DIST sphinx_inline_tabs-2023.4.21.tar.gz 42664 BLAKE2B 
e7f00bb220a194d6aad2285af793b540233d3a4122c82c34c28d03e62fa463252dff7624470f3abf4e5cd9028c9abfabc0b663fc56acee809bcd10d1bc886038
 SHA512 
d5c856821ca3d2b251733fe200465679dc875d66719851f89b6e38fd1898e40a2bbc97975b6bbdb7bf769fb67038bbb8dd94282504adb0977c57e8d1cf3fde5c

diff --git a/dev-python/sphinx-inline-tabs/metadata.xml 
b/dev-python/sphinx-inline-tabs/metadata.xml
new file mode 100644
index ..aac31acf568d
--- /dev/null
+++ b/dev-python/sphinx-inline-tabs/metadata.xml
@@ -0,0 +1,15 @@
+
+https://www.gentoo.org/dtd/metadata.dtd;>
+
+   
+   ale...@gentoo.org
+       Alexey Shvetsov
+   
+   
+   
+   pradyunsg/sphinx-inline-tabs
+   sphinx-inline-tabs
+   https://sphinx-inline-tabs.readthedocs.io
+   
https://github.com/pradyunsg/sphinx-inline-tabs/issues
+   
+

diff --git a/dev-python/sphinx-inline-tabs/sphinx-inline-tabs-2023.4.21.ebuild 
b/dev-python/sphinx-inline-tabs/sphinx-inline-tabs-2023.4.21.ebuild
new file mode 100644
index ..ad6169c8bad4
--- /dev/null
+++ b/dev-python/sphinx-inline-tabs/sphinx-inline-tabs-2023.4.21.ebuild
@@ -0,0 +1,21 @@
+# Copyright 2022-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+DISTUTILS_USE_PEP517=flit
+PYTHON_COMPAT=( python3_{10..12} )
+
+inherit distutils-r1 pypi
+
+DESCRIPTION="A sphinx extension for inline tabs"
+HOMEPAGE="https://pypi.org/project/sphinx-inline-tabs/;
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~x86"
+
+RDEPEND="
+   >=dev-python/sphinx-6.0[${PYTHON_USEDEP}]
+"
+
+distutils_enable_tests pytest

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/files/, sci-chemistry/gromacs/

2023-04-25 Thread Alexey Shvetsov

commit: dfb5e4969403efb9f58cfea999c35f09d613c1a3
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Tue Apr 25 09:49:08 2023 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Tue Apr 25 09:50:01 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=dfb5e496

sci-chemistry/gromacs: Fix build with cuda-12

Thanks to pacho  gentoo.org for patch

Closes: https://bugs.gentoo.org/900204
Signed-off-by: Alexey Shvetsov  gentoo.org>

 .../files/gromacs-2021-cuda-detection.patch| 339 +
 sci-chemistry/gromacs/gromacs-2021.7.ebuild|   5 +-
 2 files changed, 343 insertions(+), 1 deletion(-)

diff --git a/sci-chemistry/gromacs/files/gromacs-2021-cuda-detection.patch 
b/sci-chemistry/gromacs/files/gromacs-2021-cuda-detection.patch
new file mode 100644
index ..8b458e96cb53
--- /dev/null
+++ b/sci-chemistry/gromacs/files/gromacs-2021-cuda-detection.patch
@@ -0,0 +1,339 @@
+--- gromacs-2021.7/cmake/gmxManageNvccConfig.cmake 2023-01-31 
12:45:45.0 +0100
 gromacs-2022.5/cmake/gmxManageNvccConfig.cmake 2023-02-03 
12:53:34.0 +0100
+@@ -1,11 +1,9 @@
+ #
+ # This file is part of the GROMACS molecular simulation package.
+ #
+-# Copyright (c) 2012,2013,2014,2015,2016 by the GROMACS development team.
+-# Copyright (c) 2017,2018,2019,2020,2021, by the GROMACS development team, 
led by
+-# Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
+-# and including many others, as listed in the AUTHORS file in the
+-# top-level source directory and at http://www.gromacs.org.
++# Copyright 2012- The GROMACS Authors
++# and the project initiators Erik Lindahl, Berk Hess and David van der Spoel.
++# Consult the AUTHORS/COPYING files and https://www.gromacs.org for details.
+ #
+ # GROMACS is free software; you can redistribute it and/or
+ # modify it under the terms of the GNU Lesser General Public License
+@@ -19,7 +17,7 @@
+ #
+ # You should have received a copy of the GNU Lesser General Public
+ # License along with GROMACS; if not, see
+-# http://www.gnu.org/licenses, or write to the Free Software Foundation,
++# https://www.gnu.org/licenses, or write to the Free Software Foundation,
+ # Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301  USA.
+ #
+ # If you want to redistribute modifications to GROMACS, please
+@@ -28,10 +26,10 @@
+ # consider code for inclusion in the official distribution, but
+ # derived work must not be called official GROMACS. Details are found
+ # in the README & COPYING files - if they are missing, get the
+-# official version at http://www.gromacs.org.
++# official version at https://www.gromacs.org.
+ #
+ # To help us fund GROMACS development, we humbly ask that you cite
+-# the research papers on the package. Check out http://www.gromacs.org.
++# the research papers on the package. Check out https://www.gromacs.org.
+ 
+ # Manage CUDA nvcc compilation configuration, try to be smart to ease the 
users'
+ # pain as much as possible:
+@@ -51,7 +49,7 @@
+ # glibc source shows that _FORCE_INLINES is only used in this string.h
+ # feature and performance of memcpy variants is unimportant for CUDA
+ # code in GROMACS. So this workaround is good enough to keep problems
+-# away from users installing GROMACS. See Issue #1942.
++# away from users installing GROMACS. See Issue #1982.
+ function(work_around_glibc_2_23)
+ try_compile(IS_GLIBC_2_23_OR_HIGHER ${CMAKE_BINARY_DIR} 
${CMAKE_SOURCE_DIR}/cmake/TestGlibcVersion.cpp)
+ if(IS_GLIBC_2_23_OR_HIGHER)
+@@ -83,67 +81,158 @@
+ mark_as_advanced(CUDA_HOST_COMPILER CUDA_HOST_COMPILER_OPTIONS)
+ endif()
+ 
++# We would like to be helpful and reject the host compiler with a
++# clear error message at configure time, rather than let nvcc
++# later reject the host compiler as not supported when the first
++# CUDA source file is built. We've implemented that for current
++# nvcc running on Unix-like systems, but e.g. changes to nvcc
++# will further affect the limited portability of this checking
++# code. Set the CMake variable GMX_NVCC_WORKS on if you want to
++# bypass this check.
++if((_cuda_nvcc_executable_or_flags_changed OR CUDA_HOST_COMPILER_CHANGED OR 
NOT GMX_NVCC_WORKS) AND NOT WIN32)
++message(STATUS "Check for working NVCC/C++ compiler combination with nvcc 
'${CUDA_NVCC_EXECUTABLE}'")
++execute_process(COMMAND ${CUDA_NVCC_EXECUTABLE} 
--compiler-bindir=${CUDA_HOST_COMPILER} -c ${CUDA_NVCC_FLAGS} 
${CUDA_NVCC_FLAGS_${_build_type}} ${CMAKE_SOURCE_DIR}/cmake/TestCUDA.cu
++RESULT_VARIABLE _cuda_test_res
++OUTPUT_VARIABLE _cuda_test_out
++ERROR_VARIABLE  _cuda_test_err
++OUTPUT_STRIP_TRAILING_WHITESPACE)
++
++if(${_cuda_test_res})
++message(STATUS "Check for working NVCC/C compiler combination - 
broken")
++message(STATUS "${CUDA_NVCC_EXECUTABLE} standard output: 
'${_cuda_test_out}'")
++message(STA

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2023-04-25 Thread Alexey Shvetsov

commit: d3ecfd5fbefbd84f7a93df9bf87f68af38adee2f
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Tue Apr 25 09:39:59 2023 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Tue Apr 25 09:40:23 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d3ecfd5f

sci-chemistry/gromacs: add 2023.1

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/Manifest  |   3 +
 sci-chemistry/gromacs/gromacs-2023.1.ebuild | 331 
 2 files changed, 334 insertions(+)

diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest
index c0a2d0f2ab58..6b7f7795 100644
--- a/sci-chemistry/gromacs/Manifest
+++ b/sci-chemistry/gromacs/Manifest
@@ -5,6 +5,7 @@ DIST gromacs-2021.6.tar.gz 38012702 BLAKE2B 
023ae37dc53643758afa050fd179cd66f3c6
 DIST gromacs-2021.7.tar.gz 38028032 BLAKE2B 
2dc1b15ca8692ca5cf4ad1c7a266b9e2ced064d34a63cef61fea69e48231dd0310cfd8484d29c56cdb599f795d7655959f40038ac933b46ad2841d57bf2b3646
 SHA512 
ca478533da3bcb377fda30682660db8eb13beef6456fac6013a1a97ec3be60b5594567412e1e2a31392e484f9a40a22da1f12336f4738cf0422ff4f3e8814609
 DIST gromacs-2022.4.tar.gz 40352282 BLAKE2B 
616ba05a70a483d7d8fadefb383ac9fc8825ac09ea92f55a0222c57ac91e4a045fb55405ec963303d8dbabb04b3d1f8c73062785b3812b3c6b7582e002dc5538
 SHA512 
15c642f2b63c1731a01a3b58c13d454f57c29607554a6693c2e62f38da574c6d596c5cb6f361e0feb5e1069b3b19bb49ceaa432c030da91f48e41654e3e6a62f
 DIST gromacs-2022.5.tar.gz 40362776 BLAKE2B 
e77c96cd995fb6c8284bcf9728e2f95e265911f643c69d00cc5910c6d22ada41293a1cb74033e708957776551b253453f64dba46497d68b2f73c675e94f30ddd
 SHA512 
79310d6fd39a160e7bbc661a04540c9bcb89f40c133d1031ca16998ef0a67fc4a023f57950b22793f0c91b5fe47fd78cb2e7afedb50fe9251b1c920c9267344d
+DIST gromacs-2023.1.tar.gz 41934072 BLAKE2B 
6d04642ba37a8563fafc10e0be83e33aab5ce25ef43ec2c9555e84328096bbe61426558a1433b086028f3c6637a5b3ae82241e67f206c0dd0b5254f5ec27ae4c
 SHA512 
4bddbbc56f26487db9d35f371d65725289d1355dc4c295d32698499e05eb74e31d4db579fc1f665edb55a68b002bddacf37c0f05d3f970bc149990d434b1
 DIST gromacs-2023.tar.gz 41863526 BLAKE2B 
81669eaf176e48855e168da81f410f949851a5b7d1fde43ee367f4bbaeef4a61b963e7c936c8a07d0eb51ad0e412e2826c6dd194c1df6d3ba39490decdf9fb21
 SHA512 
4593a0802d809ea797c3d3ba157851c279e9569e96c3aefa2dbcf97b5a1a74cd9840f0fcf0f032f49024691458941efb43e59e4e05c7ee44ee46d6b3621e52d5
 DIST manual-2018.8.pdf 10025023 BLAKE2B 
afb0a6e6a72d78df743fcb57e7c1716848589e571dd35167b957a9b407ca27978ccfb6cb9e0df9c9439b888f352501a00ba32281ed1e0b4193bd606f1d77152e
 SHA512 
b1972f7ce965bfc9377542993c5943ea4868a8ed23a969d4203264746d6bea3a7a65c6379196ece37fd6d68ec7ec80f827bde87d1049284af7082759a124f1d5
 DIST manual-2019.6.pdf 12702376 BLAKE2B 
c350127bc06a9eb3dee73da39037c84daeb89500e23cb131bd19a150bf60602d4dde7611e0c6f0f344af4093e96a899303dac71b4df56fd0c44c3a48a56606b7
 SHA512 
dfdff67c2c1c9ce1f1c236b7686c5331b0fe86951da6c98eddd6a3e748815e0be0a9653ae4318469fcdd913c4e7c355d64a997cc80b9d9fbe6282ef6d98e61eb
@@ -13,6 +14,7 @@ DIST manual-2021.6.pdf 12256595 BLAKE2B 
5d808e38571b38c1f6e0d115f6e604238206cc00
 DIST manual-2021.7.pdf 12256526 BLAKE2B 
6f298d7dac142f66914bbc2ea7d6ca70c4aeafaf33ccf12336d5cec64b1f1097b5332c767bb411ccef706ec6184479a84bcf59bda21c4249d45d8ce3dea08e79
 SHA512 
197765accb8ab6c5f1cc94b2697ff1817e157d85fa231dfe36a85036076e04da2a8035de66aba4f46c6dd7f553176357b94c92e1da5d1dabc574c627deee5279
 DIST manual-2022.4.pdf 13080976 BLAKE2B 
45685fa1d727aa30425e946ac72e0bd723528032e3fb45525d3c025316ee2682ea3c9cc2fd75b5cd4e900adbc6e7f577e3368d9e0681294fd1515df3d2e5d840
 SHA512 
a7ac3a80a90f14b6917e15633d77230d24cdcf19ade38d14b35c6451074848a7754b33c612e2a26a657f2edd3d6710e5a8130cacb107d4085d1bd934267ad623
 DIST manual-2022.5.pdf 13081119 BLAKE2B 
7a0ffd086d98527d42da4a22984d8351ad7861e32951e8b65c88e7d0df1559303750886ae31a7c158b4e22f616f6dd5deed9a63b0ed114bb1e0adfda9350a487
 SHA512 
707869ee6052f1b7f75376b0f78fcc4859035234957cc740bd770ea3bea3a591f7fc1fbc0b8526baab48eebfa506d03927df94ddc9c412c75dc2f2864574dd82
+DIST manual-2023.1.pdf 13526498 BLAKE2B 
a9aabcb722954c9c83a8f5945c85e634b0b82ace8b9b077c3f2b9ff432ca71d3e2d5ca2dd52d6ce489d77d3d4ca7b41d75e5566205bb8855caa650fa2722e5ec
 SHA512 
b6ca6c822ac5b3cbe3c84d8fd51d3ed465268c00bb5f96e2afa557d45f9c534b0de278f33a0fdf43080c9c619344b98cd71847e17b297a789eec4c8b42dea7b2
 DIST manual-2023.pdf 13516908 BLAKE2B 
03a62190921c1a5ddf1ce6b0af5f8d83eaea26d31ac9b7e2f59f8b08e350d7147ee03ff8ec4e81e43777d04fa3d91c96d2a3dc8daa53a2565df02c39d6897d06
 SHA512 
2b16ca234941ede6415f89e0e31ee611ea1324454f5ddaf3cbcbdfbb5e864344faf012e5106131dcb9d3c1ffbbac358f1ea387166b1e45035e6427e344ff1964
 DIST regressiontests-2018.8.tar.gz 67855469 BLAKE2B 
34c9b339f6229f483afbb5192ee6ba8b8f72d5c26907a853af9c53dfece0d88739e48f6b44b78d1c010f988f9385d077285300522164f533a5861e9dda879275
 SHA512 
3642389d27bd1942cd0f091c940ae97b197b94856a387fe581dc516b0d4169480f16551d4ba357f9282b3337d605c286d51dd38112ac87c826dda63490483

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2023-02-13 Thread Alexey Shvetsov

commit: 08ac5b379688b5e80a0d748fc1fb8f067d1610ba
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Tue Feb 14 07:32:59 2023 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Tue Feb 14 07:32:59 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=08ac5b37

sci-chemistry/gromacs: add 2023, drop 2023_rc1

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/Manifest  | 6 +++---
 .../gromacs/{gromacs-2023_rc1.ebuild => gromacs-2023.ebuild}| 0
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest
index 848758a7570d..c0a2d0f2ab58 100644
--- a/sci-chemistry/gromacs/Manifest
+++ b/sci-chemistry/gromacs/Manifest
@@ -5,7 +5,7 @@ DIST gromacs-2021.6.tar.gz 38012702 BLAKE2B 
023ae37dc53643758afa050fd179cd66f3c6
 DIST gromacs-2021.7.tar.gz 38028032 BLAKE2B 
2dc1b15ca8692ca5cf4ad1c7a266b9e2ced064d34a63cef61fea69e48231dd0310cfd8484d29c56cdb599f795d7655959f40038ac933b46ad2841d57bf2b3646
 SHA512 
ca478533da3bcb377fda30682660db8eb13beef6456fac6013a1a97ec3be60b5594567412e1e2a31392e484f9a40a22da1f12336f4738cf0422ff4f3e8814609
 DIST gromacs-2022.4.tar.gz 40352282 BLAKE2B 
616ba05a70a483d7d8fadefb383ac9fc8825ac09ea92f55a0222c57ac91e4a045fb55405ec963303d8dbabb04b3d1f8c73062785b3812b3c6b7582e002dc5538
 SHA512 
15c642f2b63c1731a01a3b58c13d454f57c29607554a6693c2e62f38da574c6d596c5cb6f361e0feb5e1069b3b19bb49ceaa432c030da91f48e41654e3e6a62f
 DIST gromacs-2022.5.tar.gz 40362776 BLAKE2B 
e77c96cd995fb6c8284bcf9728e2f95e265911f643c69d00cc5910c6d22ada41293a1cb74033e708957776551b253453f64dba46497d68b2f73c675e94f30ddd
 SHA512 
79310d6fd39a160e7bbc661a04540c9bcb89f40c133d1031ca16998ef0a67fc4a023f57950b22793f0c91b5fe47fd78cb2e7afedb50fe9251b1c920c9267344d
-DIST gromacs-2023-rc1.tar.gz 41863824 BLAKE2B 
c365ccd83b8f271be8f1a515f4dc0ebd729ce43023e979a52046fc827e786f84f09de894af9b8da4f7ce6e06a1ae050e8ff387892f76787857327ce2bc397042
 SHA512 
7ab8158624e0c93c0f06bd7023b97012d80afa5e068cb4489e7e9700171a5a8f69ae042bf0256c78aaec527d9a1b88f5f2dce6c8c7d4f46a457b6a9568b70f45
+DIST gromacs-2023.tar.gz 41863526 BLAKE2B 
81669eaf176e48855e168da81f410f949851a5b7d1fde43ee367f4bbaeef4a61b963e7c936c8a07d0eb51ad0e412e2826c6dd194c1df6d3ba39490decdf9fb21
 SHA512 
4593a0802d809ea797c3d3ba157851c279e9569e96c3aefa2dbcf97b5a1a74cd9840f0fcf0f032f49024691458941efb43e59e4e05c7ee44ee46d6b3621e52d5
 DIST manual-2018.8.pdf 10025023 BLAKE2B 
afb0a6e6a72d78df743fcb57e7c1716848589e571dd35167b957a9b407ca27978ccfb6cb9e0df9c9439b888f352501a00ba32281ed1e0b4193bd606f1d77152e
 SHA512 
b1972f7ce965bfc9377542993c5943ea4868a8ed23a969d4203264746d6bea3a7a65c6379196ece37fd6d68ec7ec80f827bde87d1049284af7082759a124f1d5
 DIST manual-2019.6.pdf 12702376 BLAKE2B 
c350127bc06a9eb3dee73da39037c84daeb89500e23cb131bd19a150bf60602d4dde7611e0c6f0f344af4093e96a899303dac71b4df56fd0c44c3a48a56606b7
 SHA512 
dfdff67c2c1c9ce1f1c236b7686c5331b0fe86951da6c98eddd6a3e748815e0be0a9653ae4318469fcdd913c4e7c355d64a997cc80b9d9fbe6282ef6d98e61eb
 DIST manual-2020.7.pdf 11850780 BLAKE2B 
38594e87993badfbbcf47d6010a7f67d3c3426dab85e1462916b4d62be27b5764953f912cf2b71ee24877e0bfa27b3f74431da2da81b4977d58cb66b2cc795a3
 SHA512 
4f184f2c90e0bac01a48069cc546cd5b04fa5f543f90dd2d68c6d17be278152fd09456b6a6c5c8236f8fb85a174d6ec7a1c7b44d437b4e6fea5d0ada73cec0f6
@@ -13,7 +13,7 @@ DIST manual-2021.6.pdf 12256595 BLAKE2B 
5d808e38571b38c1f6e0d115f6e604238206cc00
 DIST manual-2021.7.pdf 12256526 BLAKE2B 
6f298d7dac142f66914bbc2ea7d6ca70c4aeafaf33ccf12336d5cec64b1f1097b5332c767bb411ccef706ec6184479a84bcf59bda21c4249d45d8ce3dea08e79
 SHA512 
197765accb8ab6c5f1cc94b2697ff1817e157d85fa231dfe36a85036076e04da2a8035de66aba4f46c6dd7f553176357b94c92e1da5d1dabc574c627deee5279
 DIST manual-2022.4.pdf 13080976 BLAKE2B 
45685fa1d727aa30425e946ac72e0bd723528032e3fb45525d3c025316ee2682ea3c9cc2fd75b5cd4e900adbc6e7f577e3368d9e0681294fd1515df3d2e5d840
 SHA512 
a7ac3a80a90f14b6917e15633d77230d24cdcf19ade38d14b35c6451074848a7754b33c612e2a26a657f2edd3d6710e5a8130cacb107d4085d1bd934267ad623
 DIST manual-2022.5.pdf 13081119 BLAKE2B 
7a0ffd086d98527d42da4a22984d8351ad7861e32951e8b65c88e7d0df1559303750886ae31a7c158b4e22f616f6dd5deed9a63b0ed114bb1e0adfda9350a487
 SHA512 
707869ee6052f1b7f75376b0f78fcc4859035234957cc740bd770ea3bea3a591f7fc1fbc0b8526baab48eebfa506d03927df94ddc9c412c75dc2f2864574dd82
-DIST manual-2023-rc1.pdf 13506754 BLAKE2B 
9487753e788fa5b2d01255717769e0b01cf7adcb4ae99a1f37f4ad0f8acccfbf4eff0a4c76add63bc82bffdf844cf8dd1d858d15a6bacd6635ec3a3474e10f6f
 SHA512 
f26df914402793c656a798847524c0b9207a4163bb36d6cb90740a699418719f7b124343b4886e50d92023c14f8c1e61e950c12b8e1e4702007e34677cd17ef2
+DIST manual-2023.pdf 13516908 BLAKE2B 
03a62190921c1a5ddf1ce6b0af5f8d83eaea26d31ac9b7e2f59f8b08e350d7147ee03ff8ec4e81e43777d04fa3d91c96d2a3dc8daa53a2565df02c39d689

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2023-02-13 Thread Alexey Shvetsov

commit: 70d6b78804802aebc1e50b6c16dfe3d0ba6aafe6
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Tue Feb 14 07:32:16 2023 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Tue Feb 14 07:32:16 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=70d6b788

sci-chemistry/gromacs: add 2022.5

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/Manifest  |   3 +
 sci-chemistry/gromacs/gromacs-2022.5.ebuild | 333 
 2 files changed, 336 insertions(+)

diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest
index 1e435c15c0f9..848758a7570d 100644
--- a/sci-chemistry/gromacs/Manifest
+++ b/sci-chemistry/gromacs/Manifest
@@ -4,6 +4,7 @@ DIST gromacs-2020.7.tar.gz 29175554 BLAKE2B 
98f1aa415946f8eb113febc81105f0c1b091
 DIST gromacs-2021.6.tar.gz 38012702 BLAKE2B 
023ae37dc53643758afa050fd179cd66f3c6d6266f6afceee5eb35c890a3ae284956f2bc2409156d6e1fa03a7f23f7b04c27e1820547fd5f147b344d94da7d40
 SHA512 
65d7874e5cd838ce4f29d033c66304738ccc30f1987f9f8541725058b2fc4551302a399f6ce773e81ac9485963187c48feaf92c71789f4c345c82bd335f806a7
 DIST gromacs-2021.7.tar.gz 38028032 BLAKE2B 
2dc1b15ca8692ca5cf4ad1c7a266b9e2ced064d34a63cef61fea69e48231dd0310cfd8484d29c56cdb599f795d7655959f40038ac933b46ad2841d57bf2b3646
 SHA512 
ca478533da3bcb377fda30682660db8eb13beef6456fac6013a1a97ec3be60b5594567412e1e2a31392e484f9a40a22da1f12336f4738cf0422ff4f3e8814609
 DIST gromacs-2022.4.tar.gz 40352282 BLAKE2B 
616ba05a70a483d7d8fadefb383ac9fc8825ac09ea92f55a0222c57ac91e4a045fb55405ec963303d8dbabb04b3d1f8c73062785b3812b3c6b7582e002dc5538
 SHA512 
15c642f2b63c1731a01a3b58c13d454f57c29607554a6693c2e62f38da574c6d596c5cb6f361e0feb5e1069b3b19bb49ceaa432c030da91f48e41654e3e6a62f
+DIST gromacs-2022.5.tar.gz 40362776 BLAKE2B 
e77c96cd995fb6c8284bcf9728e2f95e265911f643c69d00cc5910c6d22ada41293a1cb74033e708957776551b253453f64dba46497d68b2f73c675e94f30ddd
 SHA512 
79310d6fd39a160e7bbc661a04540c9bcb89f40c133d1031ca16998ef0a67fc4a023f57950b22793f0c91b5fe47fd78cb2e7afedb50fe9251b1c920c9267344d
 DIST gromacs-2023-rc1.tar.gz 41863824 BLAKE2B 
c365ccd83b8f271be8f1a515f4dc0ebd729ce43023e979a52046fc827e786f84f09de894af9b8da4f7ce6e06a1ae050e8ff387892f76787857327ce2bc397042
 SHA512 
7ab8158624e0c93c0f06bd7023b97012d80afa5e068cb4489e7e9700171a5a8f69ae042bf0256c78aaec527d9a1b88f5f2dce6c8c7d4f46a457b6a9568b70f45
 DIST manual-2018.8.pdf 10025023 BLAKE2B 
afb0a6e6a72d78df743fcb57e7c1716848589e571dd35167b957a9b407ca27978ccfb6cb9e0df9c9439b888f352501a00ba32281ed1e0b4193bd606f1d77152e
 SHA512 
b1972f7ce965bfc9377542993c5943ea4868a8ed23a969d4203264746d6bea3a7a65c6379196ece37fd6d68ec7ec80f827bde87d1049284af7082759a124f1d5
 DIST manual-2019.6.pdf 12702376 BLAKE2B 
c350127bc06a9eb3dee73da39037c84daeb89500e23cb131bd19a150bf60602d4dde7611e0c6f0f344af4093e96a899303dac71b4df56fd0c44c3a48a56606b7
 SHA512 
dfdff67c2c1c9ce1f1c236b7686c5331b0fe86951da6c98eddd6a3e748815e0be0a9653ae4318469fcdd913c4e7c355d64a997cc80b9d9fbe6282ef6d98e61eb
@@ -11,6 +12,7 @@ DIST manual-2020.7.pdf 11850780 BLAKE2B 
38594e87993badfbbcf47d6010a7f67d3c3426da
 DIST manual-2021.6.pdf 12256595 BLAKE2B 
5d808e38571b38c1f6e0d115f6e604238206cc001f59d05ed855e80c324c0e6fd7767adb723b3d0edd1267ae5973a3b83b76bd04d2dc99769e6440600d8e2146
 SHA512 
64fe56422d7417f6f61b10346c99e24c3f423f0cedc3794e0809250282bc87ef692b47ae6c3f95ad7994aa3860ed82035cbacc76eb78a2f54a29052a05260af2
 DIST manual-2021.7.pdf 12256526 BLAKE2B 
6f298d7dac142f66914bbc2ea7d6ca70c4aeafaf33ccf12336d5cec64b1f1097b5332c767bb411ccef706ec6184479a84bcf59bda21c4249d45d8ce3dea08e79
 SHA512 
197765accb8ab6c5f1cc94b2697ff1817e157d85fa231dfe36a85036076e04da2a8035de66aba4f46c6dd7f553176357b94c92e1da5d1dabc574c627deee5279
 DIST manual-2022.4.pdf 13080976 BLAKE2B 
45685fa1d727aa30425e946ac72e0bd723528032e3fb45525d3c025316ee2682ea3c9cc2fd75b5cd4e900adbc6e7f577e3368d9e0681294fd1515df3d2e5d840
 SHA512 
a7ac3a80a90f14b6917e15633d77230d24cdcf19ade38d14b35c6451074848a7754b33c612e2a26a657f2edd3d6710e5a8130cacb107d4085d1bd934267ad623
+DIST manual-2022.5.pdf 13081119 BLAKE2B 
7a0ffd086d98527d42da4a22984d8351ad7861e32951e8b65c88e7d0df1559303750886ae31a7c158b4e22f616f6dd5deed9a63b0ed114bb1e0adfda9350a487
 SHA512 
707869ee6052f1b7f75376b0f78fcc4859035234957cc740bd770ea3bea3a591f7fc1fbc0b8526baab48eebfa506d03927df94ddc9c412c75dc2f2864574dd82
 DIST manual-2023-rc1.pdf 13506754 BLAKE2B 
9487753e788fa5b2d01255717769e0b01cf7adcb4ae99a1f37f4ad0f8acccfbf4eff0a4c76add63bc82bffdf844cf8dd1d858d15a6bacd6635ec3a3474e10f6f
 SHA512 
f26df914402793c656a798847524c0b9207a4163bb36d6cb90740a699418719f7b124343b4886e50d92023c14f8c1e61e950c12b8e1e4702007e34677cd17ef2
 DIST regressiontests-2018.8.tar.gz 67855469 BLAKE2B 
34c9b339f6229f483afbb5192ee6ba8b8f72d5c26907a853af9c53dfece0d88739e48f6b44b78d1c010f988f9385d077285300522164f533a5861e9dda879275
 SHA512 
3642389d27bd1942cd0f091c940ae97b197b94856a387fe581dc516b0d4169480f16551d4ba357f9282b3337d605c286d51dd38112ac87c826dda63490483

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2023-02-02 Thread Alexey Shvetsov

commit: e2b04103178eaff510860c9261b786957b65bbf0
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Thu Feb  2 08:47:00 2023 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Feb  2 08:48:10 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e2b04103

sci-chemistry/gromacs: Revert changes related to wchar

This reverts commit b26ca4509f03b1cbf969c0735fefc98e2da3f5aa.

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/gromacs-2022.4.ebuild| 2 +-
 sci-chemistry/gromacs/gromacs-2022..ebuild | 2 +-
 sci-chemistry/gromacs/gromacs-2023..ebuild | 2 +-
 sci-chemistry/gromacs/gromacs-2023_rc1.ebuild  | 2 +-
 sci-chemistry/gromacs/gromacs-.ebuild  | 2 +-
 5 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/sci-chemistry/gromacs/gromacs-2022.4.ebuild 
b/sci-chemistry/gromacs/gromacs-2022.4.ebuild
index 57c7253f3cc6..ca908310a723 100644
--- a/sci-chemistry/gromacs/gromacs-2022.4.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2022.4.ebuild
@@ -51,7 +51,7 @@ CDEPEND="
mkl? ( sci-libs/mkl )
mpi? ( virtual/mpi[cxx] )
sci-libs/lmfit:=
-   >=dev-cpp/muParser-2.3.4:=[-wchar]
+   >=dev-cpp/muParser-2.3:=
${PYTHON_DEPS}
"
 BDEPEND="${CDEPEND}

diff --git a/sci-chemistry/gromacs/gromacs-2022..ebuild 
b/sci-chemistry/gromacs/gromacs-2022..ebuild
index 57c7253f3cc6..ca908310a723 100644
--- a/sci-chemistry/gromacs/gromacs-2022..ebuild
+++ b/sci-chemistry/gromacs/gromacs-2022..ebuild
@@ -51,7 +51,7 @@ CDEPEND="
mkl? ( sci-libs/mkl )
mpi? ( virtual/mpi[cxx] )
sci-libs/lmfit:=
-   >=dev-cpp/muParser-2.3.4:=[-wchar]
+   >=dev-cpp/muParser-2.3:=
${PYTHON_DEPS}
"
 BDEPEND="${CDEPEND}

diff --git a/sci-chemistry/gromacs/gromacs-2023..ebuild 
b/sci-chemistry/gromacs/gromacs-2023..ebuild
index 168151504751..98c909cdab48 100644
--- a/sci-chemistry/gromacs/gromacs-2023..ebuild
+++ b/sci-chemistry/gromacs/gromacs-2023..ebuild
@@ -51,7 +51,7 @@ CDEPEND="
mkl? ( sci-libs/mkl )
mpi? ( virtual/mpi[cxx] )
sci-libs/lmfit:=
-   >=dev-cpp/muParser-2.3.4:=[-wchar]
+   >=dev-cpp/muParser-2.3:=
${PYTHON_DEPS}
"
 BDEPEND="${CDEPEND}

diff --git a/sci-chemistry/gromacs/gromacs-2023_rc1.ebuild 
b/sci-chemistry/gromacs/gromacs-2023_rc1.ebuild
index 168151504751..98c909cdab48 100644
--- a/sci-chemistry/gromacs/gromacs-2023_rc1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2023_rc1.ebuild
@@ -51,7 +51,7 @@ CDEPEND="
mkl? ( sci-libs/mkl )
mpi? ( virtual/mpi[cxx] )
sci-libs/lmfit:=
-   >=dev-cpp/muParser-2.3.4:=[-wchar]
+   >=dev-cpp/muParser-2.3:=
${PYTHON_DEPS}
"
 BDEPEND="${CDEPEND}

diff --git a/sci-chemistry/gromacs/gromacs-.ebuild 
b/sci-chemistry/gromacs/gromacs-.ebuild
index 168151504751..98c909cdab48 100644
--- a/sci-chemistry/gromacs/gromacs-.ebuild
+++ b/sci-chemistry/gromacs/gromacs-.ebuild
@@ -51,7 +51,7 @@ CDEPEND="
mkl? ( sci-libs/mkl )
mpi? ( virtual/mpi[cxx] )
sci-libs/lmfit:=
-   >=dev-cpp/muParser-2.3.4:=[-wchar]
+   >=dev-cpp/muParser-2.3:=
${PYTHON_DEPS}
"
 BDEPEND="${CDEPEND}

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2023-02-02 Thread Alexey Shvetsov

commit: 5682bd8f736d4405383717b48c7b3630925fbc12
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Thu Feb  2 08:45:21 2023 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Feb  2 08:45:36 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=5682bd8f

sci-chemistry/gromacs: add 2021.7

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/Manifest  |   3 +
 sci-chemistry/gromacs/gromacs-2021.7.ebuild | 352 
 2 files changed, 355 insertions(+)

diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest
index 6166ff22c51f..1e435c15c0f9 100644
--- a/sci-chemistry/gromacs/Manifest
+++ b/sci-chemistry/gromacs/Manifest
@@ -2,17 +2,20 @@ DIST gromacs-2018.8.tar.gz 29913703 BLAKE2B 
8780032305928067fbfe1559efe9eedc4d47
 DIST gromacs-2019.6.tar.gz 33446147 BLAKE2B 
adc21fb6b841b06d499607f8c0166a673645ef5af0b40bd823d0fff5ea24397e6301c5e1e0070986ae1ce1deba8a42052b66da148b071c1e21f2fe3908fee275
 SHA512 
7c227a9539e5775d5d128ae9e872a24181d79cdcd2852b86453597987e8d7332ecec371da65d089f6e610c54aafbccc8824ce298743383dd6240719ebee692a8
 DIST gromacs-2020.7.tar.gz 29175554 BLAKE2B 
98f1aa415946f8eb113febc81105f0c1b0919b96fc3c55a0ab83bf3950ff509b81eade92e645adb0bc2b407df239e20cf3f19828b6e08616437c8693c1fddcc8
 SHA512 
1d375c44cec38445e56cea252623b5b6c565680268999d4b6c14d6dc38759a27227655b2d29efaab9f9115d3677b446cb555e11cddafa0dc10c4827caaa2477b
 DIST gromacs-2021.6.tar.gz 38012702 BLAKE2B 
023ae37dc53643758afa050fd179cd66f3c6d6266f6afceee5eb35c890a3ae284956f2bc2409156d6e1fa03a7f23f7b04c27e1820547fd5f147b344d94da7d40
 SHA512 
65d7874e5cd838ce4f29d033c66304738ccc30f1987f9f8541725058b2fc4551302a399f6ce773e81ac9485963187c48feaf92c71789f4c345c82bd335f806a7
+DIST gromacs-2021.7.tar.gz 38028032 BLAKE2B 
2dc1b15ca8692ca5cf4ad1c7a266b9e2ced064d34a63cef61fea69e48231dd0310cfd8484d29c56cdb599f795d7655959f40038ac933b46ad2841d57bf2b3646
 SHA512 
ca478533da3bcb377fda30682660db8eb13beef6456fac6013a1a97ec3be60b5594567412e1e2a31392e484f9a40a22da1f12336f4738cf0422ff4f3e8814609
 DIST gromacs-2022.4.tar.gz 40352282 BLAKE2B 
616ba05a70a483d7d8fadefb383ac9fc8825ac09ea92f55a0222c57ac91e4a045fb55405ec963303d8dbabb04b3d1f8c73062785b3812b3c6b7582e002dc5538
 SHA512 
15c642f2b63c1731a01a3b58c13d454f57c29607554a6693c2e62f38da574c6d596c5cb6f361e0feb5e1069b3b19bb49ceaa432c030da91f48e41654e3e6a62f
 DIST gromacs-2023-rc1.tar.gz 41863824 BLAKE2B 
c365ccd83b8f271be8f1a515f4dc0ebd729ce43023e979a52046fc827e786f84f09de894af9b8da4f7ce6e06a1ae050e8ff387892f76787857327ce2bc397042
 SHA512 
7ab8158624e0c93c0f06bd7023b97012d80afa5e068cb4489e7e9700171a5a8f69ae042bf0256c78aaec527d9a1b88f5f2dce6c8c7d4f46a457b6a9568b70f45
 DIST manual-2018.8.pdf 10025023 BLAKE2B 
afb0a6e6a72d78df743fcb57e7c1716848589e571dd35167b957a9b407ca27978ccfb6cb9e0df9c9439b888f352501a00ba32281ed1e0b4193bd606f1d77152e
 SHA512 
b1972f7ce965bfc9377542993c5943ea4868a8ed23a969d4203264746d6bea3a7a65c6379196ece37fd6d68ec7ec80f827bde87d1049284af7082759a124f1d5
 DIST manual-2019.6.pdf 12702376 BLAKE2B 
c350127bc06a9eb3dee73da39037c84daeb89500e23cb131bd19a150bf60602d4dde7611e0c6f0f344af4093e96a899303dac71b4df56fd0c44c3a48a56606b7
 SHA512 
dfdff67c2c1c9ce1f1c236b7686c5331b0fe86951da6c98eddd6a3e748815e0be0a9653ae4318469fcdd913c4e7c355d64a997cc80b9d9fbe6282ef6d98e61eb
 DIST manual-2020.7.pdf 11850780 BLAKE2B 
38594e87993badfbbcf47d6010a7f67d3c3426dab85e1462916b4d62be27b5764953f912cf2b71ee24877e0bfa27b3f74431da2da81b4977d58cb66b2cc795a3
 SHA512 
4f184f2c90e0bac01a48069cc546cd5b04fa5f543f90dd2d68c6d17be278152fd09456b6a6c5c8236f8fb85a174d6ec7a1c7b44d437b4e6fea5d0ada73cec0f6
 DIST manual-2021.6.pdf 12256595 BLAKE2B 
5d808e38571b38c1f6e0d115f6e604238206cc001f59d05ed855e80c324c0e6fd7767adb723b3d0edd1267ae5973a3b83b76bd04d2dc99769e6440600d8e2146
 SHA512 
64fe56422d7417f6f61b10346c99e24c3f423f0cedc3794e0809250282bc87ef692b47ae6c3f95ad7994aa3860ed82035cbacc76eb78a2f54a29052a05260af2
+DIST manual-2021.7.pdf 12256526 BLAKE2B 
6f298d7dac142f66914bbc2ea7d6ca70c4aeafaf33ccf12336d5cec64b1f1097b5332c767bb411ccef706ec6184479a84bcf59bda21c4249d45d8ce3dea08e79
 SHA512 
197765accb8ab6c5f1cc94b2697ff1817e157d85fa231dfe36a85036076e04da2a8035de66aba4f46c6dd7f553176357b94c92e1da5d1dabc574c627deee5279
 DIST manual-2022.4.pdf 13080976 BLAKE2B 
45685fa1d727aa30425e946ac72e0bd723528032e3fb45525d3c025316ee2682ea3c9cc2fd75b5cd4e900adbc6e7f577e3368d9e0681294fd1515df3d2e5d840
 SHA512 
a7ac3a80a90f14b6917e15633d77230d24cdcf19ade38d14b35c6451074848a7754b33c612e2a26a657f2edd3d6710e5a8130cacb107d4085d1bd934267ad623
 DIST manual-2023-rc1.pdf 13506754 BLAKE2B 
9487753e788fa5b2d01255717769e0b01cf7adcb4ae99a1f37f4ad0f8acccfbf4eff0a4c76add63bc82bffdf844cf8dd1d858d15a6bacd6635ec3a3474e10f6f
 SHA512 
f26df914402793c656a798847524c0b9207a4163bb36d6cb90740a699418719f7b124343b4886e50d92023c14f8c1e61e950c12b8e1e4702007e34677cd17ef2
 DIST regressiontests-2018.8.tar.gz 6785546

[gentoo-commits] proj/sci:master commit in: sci-chemistry/relion/

2023-02-01 Thread Alexey Shvetsov

commit: c2861a35cb4f890544347dc141403e8dc32c8ff5
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Wed Feb  1 12:03:34 2023 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Wed Feb  1 12:03:34 2023 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=c2861a35

sci-chemistry/relion: Update relion ebuilds

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/relion/metadata.xml|  1 +
 sci-chemistry/relion/relion-4.0.0.ebuild | 30 +-
 sci-chemistry/relion/relion-.ebuild  | 69 
 3 files changed, 98 insertions(+), 2 deletions(-)

diff --git a/sci-chemistry/relion/metadata.xml 
b/sci-chemistry/relion/metadata.xml
index 33e6e7e5d..101a056b9 100644
--- a/sci-chemistry/relion/metadata.xml
+++ b/sci-chemistry/relion/metadata.xml
@@ -11,6 +11,7 @@


Enable relion gui
+   Enable CUDA support


3dem/relion

diff --git a/sci-chemistry/relion/relion-4.0.0.ebuild 
b/sci-chemistry/relion/relion-4.0.0.ebuild
index a40375f64..c6d7d90db 100644
--- a/sci-chemistry/relion/relion-4.0.0.ebuild
+++ b/sci-chemistry/relion/relion-4.0.0.ebuild
@@ -7,11 +7,22 @@ inherit cmake
 
 DESCRIPTION="Image-processing software for cryo-electron microscopy"
 HOMEPAGE="https://www3.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page;
-SRC_URI="https://github.com/3dem/relion/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+if [[ ${PV} = ** ]]; then
+   EGIT_REPO_URI="https://github.com/3dem/relion.git;
+   [[ ${PV} =  ]] && EGIT_BRANCH="master" || EGIT_BRANCH="ver${PV:0:4}"
+   inherit git-r3
+   
SRC_URI="ftp://ftp.mrc-lmb.cam.ac.uk/pub/dari/class_ranker_0.1.3_torch_1.0.1.pt.tar.gz;
+else
+   SRC_URI="
+   https://github.com/3dem/relion/archive/${PV}.tar.gz -> ${P}.tar.gz
+   
ftp://ftp.mrc-lmb.cam.ac.uk/pub/dari/class_ranker_0.1.3_torch_1.0.1.pt.tar.gz
+   "
+   KEYWORDS="~amd64"
+fi
 
 LICENSE="GPL-2"
 SLOT="0"
-KEYWORDS="~amd64"
 IUSE="+gui cuda"
 
 DEPEND="
@@ -30,6 +41,21 @@ BDEPEND="${DEPEND}"
 
 PATCHES=( "${FILESDIR}/${PN}-4.0.0-build.patch" )
 
+src_unpack() {
+   git-r3_src_unpack
+   default
+}
+
+src_prepare() {
+   cmake_src_prepare
+   mkdir -p "${S}/external/torch_models/"
+   cp "${DISTDIR}/class_ranker_0.1.3_torch_1.0.1.pt.tar.gz" 
"${S}/external/torch_models/"
+   mkdir -p "${S}/external/torch_models/class_ranker/"
+   cp "${WORKDIR}/class_ranker_0.1.3_torch_1.0.1.pt" 
"${S}/external/torch_models/class_ranker/"
+   sed -e 
"s:{CMAKE_INSTALL_PREFIX}/lib:{CMAKE_INSTALL_PREFIX}/$(get_libdir):g" -i 
CMakeLists.txt || die
+   sed -e "s:LIBRARY DESTINATION lib:LIBRARY DESTINATION $(get_libdir):g" 
-i src/apps/CMakeLists.txt || die
+}
+
 src_configure() {
CMAKE_BUILD_TYPE=Release
mycmakeargs=(

diff --git a/sci-chemistry/relion/relion-.ebuild 
b/sci-chemistry/relion/relion-.ebuild
new file mode 100644
index 0..12e09d2fe
--- /dev/null
+++ b/sci-chemistry/relion/relion-.ebuild
@@ -0,0 +1,69 @@
+# Copyright 2019-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+inherit cmake
+
+DESCRIPTION="Image-processing software for cryo-electron microscopy"
+HOMEPAGE="https://www3.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page;
+
+if [[ ${PV} = ** ]]; then
+   EGIT_REPO_URI="https://github.com/3dem/relion.git;
+   [[ ${PV} =  ]] && EGIT_BRANCH="master" || EGIT_BRANCH="ver${PV:0:4}"
+   inherit git-r3
+   
SRC_URI="ftp://ftp.mrc-lmb.cam.ac.uk/pub/dari/class_ranker_0.1.3_torch_1.0.1.pt.tar.gz;
+else
+   SRC_URI="
+   https://github.com/3dem/relion/archive/${PV}.tar.gz -> ${P}.tar.gz
+   
ftp://ftp.mrc-lmb.cam.ac.uk/pub/dari/class_ranker_0.1.3_torch_1.0.1.pt.tar.gz
+   "
+   KEYWORDS="~amd64"
+fi
+
+LICENSE="GPL-2"
+SLOT="0"
+IUSE="+gui cuda"
+
+DEPEND="
+   gui? ( x11-libs/fltk )
+   cuda? ( dev-util/nvidia-cuda-toolkit )
+   dev-cpp/tbb
+   sci-libs/fftw:3.0
+   media-libs/tiff
+   virtual/mpi
+"
+RDEPEND="
+   ${DEPEND}
+   sci-chemistry/ctffind
+"
+BDEPEND="${DEPEND}"
+
+src_unpack() {
+   git-r3_src_unpack
+   default
+}
+
+src_prepare() {
+   cmake_src_prepare
+   mkdir -p "${S}/external/torch_models/"
+   cp "${DISTDIR}/class_ranker_0.1.3_torch_1.0.1.pt.tar.gz" 
"${S}/external/torch_models/"
+   mkdir -p "${S}/external/torch_models/class_ranker/"
+   cp "${WORKDIR}/class_ranker_0.1.3_torch_1.0.1.pt&qu

[gentoo-commits] proj/sci:master commit in: sci-chemistry/ctffind/

2023-02-01 Thread Alexey Shvetsov

commit: e4b26afe8e26547c7696cc6969cf494801ea5935
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Wed Feb  1 11:58:06 2023 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Wed Feb  1 11:58:06 2023 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=e4b26afe

sci-chemistry/ctffind: add 4.1.10, 4.1.13

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/ctffind/ctffind-4.1.10.ebuild | 37 +
 sci-chemistry/ctffind/ctffind-4.1.13.ebuild | 37 +
 2 files changed, 74 insertions(+)

diff --git a/sci-chemistry/ctffind/ctffind-4.1.10.ebuild 
b/sci-chemistry/ctffind/ctffind-4.1.10.ebuild
new file mode 100644
index 0..a69a36308
--- /dev/null
+++ b/sci-chemistry/ctffind/ctffind-4.1.10.ebuild
@@ -0,0 +1,37 @@
+# Copyright 2019-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+WX_GTK_VER="3.0-gtk3"
+inherit wxwidgets
+
+DESCRIPTION="CTF estimation (ctffind, ctftilt)"
+HOMEPAGE="https://grigoriefflab.umassmed.edu/;
+SRC_URI="https://grigoriefflab.umassmed.edu/system/tdf?path=ctffind-${PV}.tar.gz=1=node=26
 -> ${P}.tar.gz"
+
+LICENSE="Janelia-1.2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+
+DEPEND="
+   sci-libs/fftw:3.0
+   media-libs/libjpeg-turbo
+   media-libs/tiff
+   x11-libs/wxGTK:*
+"
+RDEPEND="${DEPEND}"
+BDEPEND="
+   ${DEPEND}
+   virtual/pkgconfig"
+
+src_prepare() {
+   default
+   sed /pdb/d -i src/core/core_headers.h || die "removing pdb.h failed"
+   sed /water/d -i src/core/core_headers.h || die "removing water.h failed"
+}
+
+src_configure() {
+   setup-wxwidgets
+   default
+}

diff --git a/sci-chemistry/ctffind/ctffind-4.1.13.ebuild 
b/sci-chemistry/ctffind/ctffind-4.1.13.ebuild
new file mode 100644
index 0..a69a36308
--- /dev/null
+++ b/sci-chemistry/ctffind/ctffind-4.1.13.ebuild
@@ -0,0 +1,37 @@
+# Copyright 2019-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+WX_GTK_VER="3.0-gtk3"
+inherit wxwidgets
+
+DESCRIPTION="CTF estimation (ctffind, ctftilt)"
+HOMEPAGE="https://grigoriefflab.umassmed.edu/;
+SRC_URI="https://grigoriefflab.umassmed.edu/system/tdf?path=ctffind-${PV}.tar.gz=1=node=26
 -> ${P}.tar.gz"
+
+LICENSE="Janelia-1.2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+
+DEPEND="
+   sci-libs/fftw:3.0
+   media-libs/libjpeg-turbo
+   media-libs/tiff
+   x11-libs/wxGTK:*
+"
+RDEPEND="${DEPEND}"
+BDEPEND="
+   ${DEPEND}
+   virtual/pkgconfig"
+
+src_prepare() {
+   default
+   sed /pdb/d -i src/core/core_headers.h || die "removing pdb.h failed"
+   sed /water/d -i src/core/core_headers.h || die "removing water.h failed"
+}
+
+src_configure() {
+   setup-wxwidgets
+   default
+}

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2023-01-29 Thread Alexey Shvetsov

commit: 87dffbbeea8f54dc3fadce38abb094609eaa
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Mon Jan 30 06:42:02 2023 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Mon Jan 30 06:42:27 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=87dffbbe

sci-chemistry/gromacs: drop versions

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/Manifest |  12 -
 sci-chemistry/gromacs/gromacs-2019.6-r1.ebuild | 250 --
 sci-chemistry/gromacs/gromacs-2020.4-r1.ebuild | 347 
 sci-chemistry/gromacs/gromacs-2021.3-r1.ebuild | 352 -
 sci-chemistry/gromacs/gromacs-2021.5.ebuild| 352 -
 sci-chemistry/gromacs/gromacs-2022.3.ebuild| 333 ---
 6 files changed, 1646 deletions(-)

diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest
index 48bb6ecb5abb..6166ff22c51f 100644
--- a/sci-chemistry/gromacs/Manifest
+++ b/sci-chemistry/gromacs/Manifest
@@ -1,30 +1,18 @@
 DIST gromacs-2018.8.tar.gz 29913703 BLAKE2B 
8780032305928067fbfe1559efe9eedc4d47e27ab2f6ab54d6dba39edfcbeefbee4673d8910009048a850620b5a08ba8feb622db652c439cfa50a149ec5f0015
 SHA512 
6717895942f2ab7b54019511ed2aebadadde8e96d3c4b7414bb9168ffe418432d2dee330192e199f7b9d2f665c71f5d4f1ef0911aa7243d525a2ca182ef5b122
 DIST gromacs-2019.6.tar.gz 33446147 BLAKE2B 
adc21fb6b841b06d499607f8c0166a673645ef5af0b40bd823d0fff5ea24397e6301c5e1e0070986ae1ce1deba8a42052b66da148b071c1e21f2fe3908fee275
 SHA512 
7c227a9539e5775d5d128ae9e872a24181d79cdcd2852b86453597987e8d7332ecec371da65d089f6e610c54aafbccc8824ce298743383dd6240719ebee692a8
-DIST gromacs-2020.4.tar.gz 29149899 BLAKE2B 
a07c8efd96137d58c1edf4ac9b5aafeb16d9e65234b9459b71471827032654acacb58ed6ae87ec6e0e593a0acd799683cc4461b06cc883b089d740708619345e
 SHA512 
0c56f058741af70660baf0177724ec940dd984c05ea141ede91ee51ce3744f76d00e31bdb5db907e46fa1639de5dca637b3ace26e89f908c2e74c69f0c21ed3a
 DIST gromacs-2020.7.tar.gz 29175554 BLAKE2B 
98f1aa415946f8eb113febc81105f0c1b0919b96fc3c55a0ab83bf3950ff509b81eade92e645adb0bc2b407df239e20cf3f19828b6e08616437c8693c1fddcc8
 SHA512 
1d375c44cec38445e56cea252623b5b6c565680268999d4b6c14d6dc38759a27227655b2d29efaab9f9115d3677b446cb555e11cddafa0dc10c4827caaa2477b
-DIST gromacs-2021.3.tar.gz 37987972 BLAKE2B 
d71995c7d5a34978246e33dc637ac3d273e547afcf72d1a107026650f03286ecdf27e4b9a70113b3c3a01af59ad49ac5c813aa6e5d2e8eb29fd05582a7a28d34
 SHA512 
da420917d06de2e192dfbb4e1b9f46989ed05b5c7e641c657104ed8f2bd8b22509bffd1ecfd7c965c80544eafa6af12d6d0aba7e1e7d9d14a4a88fb3fbf394a5
-DIST gromacs-2021.5.tar.gz 38023772 BLAKE2B 
45e1f080b86626423e471f06b48b615db1913048f9f6998da8ce45408339b32f829d33dd2af57297a7d307fcffd556c333a58c309ee0f2adb021ca3755619b05
 SHA512 
56c1b312fc8e52ec6f86e445d2fa2d07107c461b35d4dc8cdf95580f05fd8e6c5fd671d0e72b2b9e74e3232bc8c41db496fe4bcaf2b9a3ae3c2cfa93489a31c5
 DIST gromacs-2021.6.tar.gz 38012702 BLAKE2B 
023ae37dc53643758afa050fd179cd66f3c6d6266f6afceee5eb35c890a3ae284956f2bc2409156d6e1fa03a7f23f7b04c27e1820547fd5f147b344d94da7d40
 SHA512 
65d7874e5cd838ce4f29d033c66304738ccc30f1987f9f8541725058b2fc4551302a399f6ce773e81ac9485963187c48feaf92c71789f4c345c82bd335f806a7
-DIST gromacs-2022.3.tar.gz 40359623 BLAKE2B 
23beacf7208df89aea6c3effe483361451a9ff20428fe79ec163a5eee4dc0db0bb00a2bee84bc9377ad272f216fd372eab1b77e8542ce231ac785b41b582fa15
 SHA512 
1a6a1674ed17dfd93dcd51537cd13c9df5bb9bd91c3a26601032f83b788a93689bac8070eb8e495a786d41cc9d474885538cbaffa4229da70dfa640ee42b7c60
 DIST gromacs-2022.4.tar.gz 40352282 BLAKE2B 
616ba05a70a483d7d8fadefb383ac9fc8825ac09ea92f55a0222c57ac91e4a045fb55405ec963303d8dbabb04b3d1f8c73062785b3812b3c6b7582e002dc5538
 SHA512 
15c642f2b63c1731a01a3b58c13d454f57c29607554a6693c2e62f38da574c6d596c5cb6f361e0feb5e1069b3b19bb49ceaa432c030da91f48e41654e3e6a62f
 DIST gromacs-2023-rc1.tar.gz 41863824 BLAKE2B 
c365ccd83b8f271be8f1a515f4dc0ebd729ce43023e979a52046fc827e786f84f09de894af9b8da4f7ce6e06a1ae050e8ff387892f76787857327ce2bc397042
 SHA512 
7ab8158624e0c93c0f06bd7023b97012d80afa5e068cb4489e7e9700171a5a8f69ae042bf0256c78aaec527d9a1b88f5f2dce6c8c7d4f46a457b6a9568b70f45
 DIST manual-2018.8.pdf 10025023 BLAKE2B 
afb0a6e6a72d78df743fcb57e7c1716848589e571dd35167b957a9b407ca27978ccfb6cb9e0df9c9439b888f352501a00ba32281ed1e0b4193bd606f1d77152e
 SHA512 
b1972f7ce965bfc9377542993c5943ea4868a8ed23a969d4203264746d6bea3a7a65c6379196ece37fd6d68ec7ec80f827bde87d1049284af7082759a124f1d5
 DIST manual-2019.6.pdf 12702376 BLAKE2B 
c350127bc06a9eb3dee73da39037c84daeb89500e23cb131bd19a150bf60602d4dde7611e0c6f0f344af4093e96a899303dac71b4df56fd0c44c3a48a56606b7
 SHA512 
dfdff67c2c1c9ce1f1c236b7686c5331b0fe86951da6c98eddd6a3e748815e0be0a9653ae4318469fcdd913c4e7c355d64a997cc80b9d9fbe6282ef6d98e61eb
-DIST manual-2020.4.pdf 11851608 BLAKE2B 
7b7bdf08e8946fcc448543b08391b94a67fee60a8c810597c1f09f70443f9d7db817c99622dd0c21c6317f5fdcd6c4a88589ecac57055cb0cd8597d

[gentoo-commits] proj/sci:master commit in: sci-chemistry/relion/files/, sci-chemistry/relion/

2022-12-27 Thread Alexey Shvetsov

commit: 088d793bd7acfaefde2894b5654763daeb31b34c
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Tue Dec 27 22:23:09 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Tue Dec 27 22:23:09 2022 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=088d793b

sci-chemistry/relion: add 4.0.0, drop 3.1.1

Signed-off-by: Alexey Shvetsov  gentoo.org>

 .../relion/files/relion-4.0.0-build.patch  | 39 ++
 .../{relion-3.1.1.ebuild => relion-4.0.0.ebuild}   |  9 +++--
 2 files changed, 45 insertions(+), 3 deletions(-)

diff --git a/sci-chemistry/relion/files/relion-4.0.0-build.patch 
b/sci-chemistry/relion/files/relion-4.0.0-build.patch
new file mode 100644
index 0..d7cb7bf2e
--- /dev/null
+++ b/sci-chemistry/relion/files/relion-4.0.0-build.patch
@@ -0,0 +1,39 @@
+From 138b9c71b41a3c8782c991053a28bfe074bffdd9 Mon Sep 17 00:00:00 2001
+From: Takanori Nakane 
+Date: Fri, 28 Oct 2022 19:51:29 +0900
+Subject: [PATCH] Repaired the build failure reported in #826 (by
+ @prehensilecode and @acaprez)
+
+---
+ src/apps/CMakeLists.txt | 16 
+ 1 file changed, 8 insertions(+), 8 deletions(-)
+
+diff --git a/src/apps/CMakeLists.txt b/src/apps/CMakeLists.txt
+index 9870b735..30985aa7 100644
+--- a/src/apps/CMakeLists.txt
 b/src/apps/CMakeLists.txt
+@@ -273,16 +273,16 @@ if (CUDA_FOUND)
+ 
+ 
+ 
+-  file(GLOB REL_JAZ_CUDA_SRC "${CMAKE_SOURCE_DIR}/src/jaz/cuda/*.cu" 
"${CMAKE_SOURCE_DIR}/src/jaz/cuda/kernels/*.cu" )
++  file(GLOB REL_JAZ_CUDA_SRC "${CMAKE_SOURCE_DIR}/src/jaz/cuda/*.cu")
+   cuda_add_library(relion_jaz_gpu_util ${REL_JAZ_CUDA_SRC})
+ 
+-  #list(APPEND EXTRA_LIBS "${CUDA_CUFFT_LIBRARIES}")
+-  #if(BUILD_SHARED_LIBS)
+-  #   install (TARGETS relion_jaz_gpu_util LIBRARY DESTINATION lib)
+-  #else()
+-  #   target_link_libraries(relion_jaz_gpu_util relion_lib)
+-  #   target_link_libraries(relion_jaz_gpu_util 
${CUDA_CUFFT_LIBRARIES})
+-  #endif()
++  list(APPEND EXTRA_LIBS "${CUDA_CUFFT_LIBRARIES}")
++  if(BUILD_SHARED_LIBS)
++  install (TARGETS relion_jaz_gpu_util LIBRARY DESTINATION lib)
++  else()
++  target_link_libraries(relion_jaz_gpu_util relion_lib)
++  target_link_libraries(relion_jaz_gpu_util 
${CUDA_CUFFT_LIBRARIES})
++  endif()
+ 
+   target_link_libraries(relion_lib relion_jaz_gpu_util 
${CUDA_CUFFT_LIBRARIES})
+   target_link_libraries(relion_lib relion_jaz_gpu_util 
${CUDA_CUFFT_LIBRARIES} ${CUDA_curand_LIBRARY})

diff --git a/sci-chemistry/relion/relion-3.1.1.ebuild 
b/sci-chemistry/relion/relion-4.0.0.ebuild
similarity index 84%
rename from sci-chemistry/relion/relion-3.1.1.ebuild
rename to sci-chemistry/relion/relion-4.0.0.ebuild
index 39e4ab229..a40375f64 100644
--- a/sci-chemistry/relion/relion-3.1.1.ebuild
+++ b/sci-chemistry/relion/relion-4.0.0.ebuild
@@ -1,7 +1,7 @@
 # Copyright 2019-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=7
+EAPI=8
 
 inherit cmake
 
@@ -12,10 +12,11 @@ 
SRC_URI="https://github.com/3dem/relion/archive/${PV}.tar.gz -> ${P}.tar.gz"
 LICENSE="GPL-2"
 SLOT="0"
 KEYWORDS="~amd64"
-IUSE="+gui"
+IUSE="+gui cuda"
 
 DEPEND="
gui? ( x11-libs/fltk )
+   cuda? ( dev-util/nvidia-cuda-toolkit )
dev-cpp/tbb
sci-libs/fftw:3.0
media-libs/tiff
@@ -27,6 +28,8 @@ RDEPEND="
 "
 BDEPEND="${DEPEND}"
 
+PATCHES=( "${FILESDIR}/${PN}-4.0.0-build.patch" )
+
 src_configure() {
CMAKE_BUILD_TYPE=Release
mycmakeargs=(
@@ -35,7 +38,7 @@ src_configure() {
-DFORCE_OWN_FFTW=OFF
-DFORCE_OWN_FLTK=OFF
-DFORCE_OWN_TBB=OFF
-   -DCUDA=OFF
+   -DCUDA=$(usex cuda)
-DGUI=$(usex gui)
)
cmake_src_configure

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/MDAnalysis/

2022-12-25 Thread Alexey Shvetsov

commit: 1b327b9680ee5a6b83e2f600aa177da6796152a5
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Sun Dec 25 22:13:18 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Sun Dec 25 22:14:59 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1b327b96

sci-chemistry/MDAnalysis: Version bump. No longer depend on nose

Closes: https://bugs.gentoo.org/765160
Closes: https://bugs.gentoo.org/878723
Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/MDAnalysis/MDAnalysis-1.0.0.ebuild   | 37 --
 ...alysis-2.0.0.ebuild => MDAnalysis-2.4.1.ebuild} |  6 ++--
 sci-chemistry/MDAnalysis/Manifest  |  3 +-
 3 files changed, 5 insertions(+), 41 deletions(-)

diff --git a/sci-chemistry/MDAnalysis/MDAnalysis-1.0.0.ebuild 
b/sci-chemistry/MDAnalysis/MDAnalysis-1.0.0.ebuild
deleted file mode 100644
index 1f9c2ac3aa5e..
--- a/sci-chemistry/MDAnalysis/MDAnalysis-1.0.0.ebuild
+++ /dev/null
@@ -1,37 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_{7..10} )
-
-inherit distutils-r1
-
-DESCRIPTION="A python library to analyze and manipulate molecular dynamics 
trajectories"
-HOMEPAGE="https://www.mdanalysis.org;
-SRC_URI="mirror://pypi/M/${PN}/${P}.tar.gz"
-
-SLOT="0"
-LICENSE="GPL-2"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="test"
-
-RDEPEND="
-   >=dev-python/numpy-1.13.3[${PYTHON_USEDEP}]
-   >=dev-python/scipy-1.0.0[${PYTHON_USEDEP}]
-   >=sci-biology/biopython-1.71[${PYTHON_USEDEP}]
-   >=dev-python/networkx-1.0[${PYTHON_USEDEP}]
-   >=dev-python/GridDataFormats-0.4.0[${PYTHON_USEDEP}]
-   >=dev-python/joblib-0.12[${PYTHON_USEDEP}]
-   >=dev-python/matplotlib-1.5.1[${PYTHON_USEDEP}]
-   dev-python/netcdf4-python[${PYTHON_USEDEP}]
-   >=dev-python/mmtf-python-1.0.0[${PYTHON_USEDEP}]
-   >=dev-python/gsd-1.9.3[${PYTHON_USEDEP}]
-   dev-python/mock[${PYTHON_USEDEP}]
-   dev-python/duecredit[${PYTHON_USEDEP}]
-   >=dev-python/six-1.4.0[${PYTHON_USEDEP}]
-   >=dev-python/tqdm-4.43.0[${PYTHON_USEDEP}]
-"
-BDEPEND="${RDEPEND}"
-
-distutils_enable_tests nose

diff --git a/sci-chemistry/MDAnalysis/MDAnalysis-2.0.0.ebuild 
b/sci-chemistry/MDAnalysis/MDAnalysis-2.4.1.ebuild
similarity index 91%
rename from sci-chemistry/MDAnalysis/MDAnalysis-2.0.0.ebuild
rename to sci-chemistry/MDAnalysis/MDAnalysis-2.4.1.ebuild
index aee4e82b683e..5d561772ca51 100644
--- a/sci-chemistry/MDAnalysis/MDAnalysis-2.0.0.ebuild
+++ b/sci-chemistry/MDAnalysis/MDAnalysis-2.4.1.ebuild
@@ -1,10 +1,12 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=8
 
 PYTHON_COMPAT=( python3_{8..10} )
 
+DISTUTILS_USE_PEP517=setuptools
+
 inherit distutils-r1
 
 DESCRIPTION="A python library to analyze and manipulate molecular dynamics 
trajectories"
@@ -34,4 +36,4 @@ RDEPEND="
 "
 BDEPEND="${RDEPEND}"
 
-distutils_enable_tests nose
+distutils_enable_tests pytest

diff --git a/sci-chemistry/MDAnalysis/Manifest 
b/sci-chemistry/MDAnalysis/Manifest
index 721870b0e526..81a4e8053d86 100644
--- a/sci-chemistry/MDAnalysis/Manifest
+++ b/sci-chemistry/MDAnalysis/Manifest
@@ -1,2 +1 @@
-DIST MDAnalysis-1.0.0.tar.gz 19552874 BLAKE2B 
dab625a898d71a67a37ac5b58eb23ded9487f475e3c76f6c335a0ed5b32a43785d0473d089fcfc56c07263d82248bf5ee7b50c513441b10fc97f97b49411cc5f
 SHA512 
4a001f45695308dd5f296bd2850d5d585c065e6b0f55efca65d91e452d78c85f13fd614eca0176a8d330e14a1c9e8ccbb919c3d4ae995b1945d09dc3ad687195
-DIST MDAnalysis-2.0.0.tar.gz 3436654 BLAKE2B 
b29734dd61bfa1e4e1d6ead0eb9a2d00869d1adce18edf95b9368bdcc16b0d71d0d6536a7df48787034a623bf52585e1636842dcaaa9dde08a69576868c1657b
 SHA512 
037eb3c709b9ddbdb2ba9b26a6632ff99a95331c3968176573076e4e208c8644c3ea262e1e9880f185eb080ff90180d887444cab0dfbfad04fc254d87f1ff986
+DIST MDAnalysis-2.4.1.tar.gz 3746899 BLAKE2B 
af63f74a31dcde8a68cbffe5158f2f955d5eda1345bcff6a19e8df3284101b1e85006de3326d29d4fe1867dc6b0c5f55467b9e3242704f97440c6a43b52f47b8
 SHA512 
796dad98c26bd36f30db166bea5ff782aa5e3ac5cddb1675b628fb753a4f645fb27e06d3986047e2ba21a22cd91f96d0ba8e529256ed960a2b7cf95204076927

[gentoo-commits] repo/gentoo:master commit in: dev-python/pika/

2022-12-24 Thread Alexey Shvetsov

commit: cfc593b8785018633817295319ee9db0bc85b74f
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Sat Dec 24 21:51:28 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Sat Dec 24 21:51:45 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=cfc593b8

dev-python/pika: add 1.3.1, drop 1.3.0

No longer depends on nose (but depends on nose2)

Closes: https://bugs.gentoo.org/877613
Signed-off-by: Alexey Shvetsov  gentoo.org>

 dev-python/pika/Manifest | 2 +-
 dev-python/pika/{pika-1.3.0.ebuild => pika-1.3.1.ebuild} | 3 +--
 2 files changed, 2 insertions(+), 3 deletions(-)

diff --git a/dev-python/pika/Manifest b/dev-python/pika/Manifest
index 513ab2001d12..b63cf1411ac3 100644
--- a/dev-python/pika/Manifest
+++ b/dev-python/pika/Manifest
@@ -1 +1 @@
-DIST pika-1.3.0.gh.tar.gz 316588 BLAKE2B 
0d808b45aa72d7d01fde41d85fbe07c44f7c87dac0b5e6bd40f09264370eaec55bb8d003cae36b0b9835615ab6a94c6f227c499866db63f8fc1c8a4e9592d324
 SHA512 
ebc12faf2d180dbc226afa34a37492f121d3a01f8884b90bfb0f31972bfb14d8cbff3fa00c2350314f7da4471b34e261328e50f878cd9df67ab896478f28e731
+DIST pika-1.3.1.gh.tar.gz 321628 BLAKE2B 
c473ec22dc20d0bdf87848b37dbca6d7c1a0581e23e89dbd6b7de382575133ae0c7db6ae505585297fd3253d948df35c74b801ff2a72c8e8cc5a53ddbfabcc48
 SHA512 
5b3b785f74cd11433198dfb9b423daae9f3acac6cee158638ac793d1bd575296d0d6425165f3f00338a65f89f48e1c2795725e7a4f791e815a5837b25c69ba46

diff --git a/dev-python/pika/pika-1.3.0.ebuild 
b/dev-python/pika/pika-1.3.1.ebuild
similarity index 95%
rename from dev-python/pika/pika-1.3.0.ebuild
rename to dev-python/pika/pika-1.3.1.ebuild
index 39213c7d8bd3..dfa2af433a30 100644
--- a/dev-python/pika/pika-1.3.0.ebuild
+++ b/dev-python/pika/pika-1.3.1.ebuild
@@ -4,7 +4,7 @@
 EAPI=8
 
 DISTUTILS_USE_PEP517=setuptools
-PYTHON_COMPAT=( python3_{8..10} )
+PYTHON_COMPAT=( python3_{8..11} )
 inherit distutils-r1
 
 DESCRIPTION="Pure-Python implementation of the AMQP"
@@ -24,7 +24,6 @@ PROPERTIES="test_network"
 
 BDEPEND="
test? (
-   dev-python/nose[${PYTHON_USEDEP}]
dev-python/nose2[${PYTHON_USEDEP}]
dev-python/twisted[${PYTHON_USEDEP}]
dev-python/tornado[${PYTHON_USEDEP}]

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2022-12-22 Thread Alexey Shvetsov

commit: e8387da1f4d652ed6404a48d7dca5c4bae9f8e32
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Thu Dec 22 16:53:15 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Dec 22 16:53:15 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e8387da1

sci-chemistry/gromacs: Fix manual build

Closes: https://bugs.gentoo.org/887611
Closes: https://bugs.gentoo.org/887683
Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/gromacs-2023..ebuild | 2 +-
 sci-chemistry/gromacs/gromacs-2023_rc1.ebuild  | 2 +-
 sci-chemistry/gromacs/gromacs-.ebuild  | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/sci-chemistry/gromacs/gromacs-2023..ebuild 
b/sci-chemistry/gromacs/gromacs-2023..ebuild
index c69ff70b99d3..36a9fd3ae771 100644
--- a/sci-chemistry/gromacs/gromacs-2023..ebuild
+++ b/sci-chemistry/gromacs/gromacs-2023..ebuild
@@ -301,7 +301,7 @@ src_install() {
 
if use doc; then
if [[ ${PV} != ** ]]; then
-   newdoc "${DISTDIR}/manual-${PV}.pdf" 
"${PN}-manual-${PV}.pdf"
+   newdoc "${DISTDIR}/manual-${PV/_/-}.pdf" 
"${PN}-manual-${PV}.pdf"
fi
fi
done

diff --git a/sci-chemistry/gromacs/gromacs-2023_rc1.ebuild 
b/sci-chemistry/gromacs/gromacs-2023_rc1.ebuild
index c69ff70b99d3..36a9fd3ae771 100644
--- a/sci-chemistry/gromacs/gromacs-2023_rc1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2023_rc1.ebuild
@@ -301,7 +301,7 @@ src_install() {
 
if use doc; then
if [[ ${PV} != ** ]]; then
-   newdoc "${DISTDIR}/manual-${PV}.pdf" 
"${PN}-manual-${PV}.pdf"
+   newdoc "${DISTDIR}/manual-${PV/_/-}.pdf" 
"${PN}-manual-${PV}.pdf"
fi
fi
done

diff --git a/sci-chemistry/gromacs/gromacs-.ebuild 
b/sci-chemistry/gromacs/gromacs-.ebuild
index c69ff70b99d3..36a9fd3ae771 100644
--- a/sci-chemistry/gromacs/gromacs-.ebuild
+++ b/sci-chemistry/gromacs/gromacs-.ebuild
@@ -301,7 +301,7 @@ src_install() {
 
if use doc; then
if [[ ${PV} != ** ]]; then
-   newdoc "${DISTDIR}/manual-${PV}.pdf" 
"${PN}-manual-${PV}.pdf"
+   newdoc "${DISTDIR}/manual-${PV/_/-}.pdf" 
"${PN}-manual-${PV}.pdf"
fi
fi
done

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2022-12-20 Thread Alexey Shvetsov

commit: ade65a5307e693745065ae30af5eb4b90c4dbf06
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Tue Dec 20 21:15:19 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Tue Dec 20 21:16:20 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ade65a53

sci-chemistry/gromacs: Refuse to build with double + opencl enabled

Closes: https://bugs.gentoo.org/873166

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/gromacs-2018.8-r1.ebuild | 1 +
 sci-chemistry/gromacs/gromacs-2019.6-r1.ebuild | 1 +
 sci-chemistry/gromacs/gromacs-2019.6-r2.ebuild | 1 +
 sci-chemistry/gromacs/gromacs-2020.4-r1.ebuild | 1 +
 sci-chemistry/gromacs/gromacs-2020.7.ebuild| 1 +
 sci-chemistry/gromacs/gromacs-2021.3-r1.ebuild | 1 +
 sci-chemistry/gromacs/gromacs-2021.5.ebuild| 1 +
 sci-chemistry/gromacs/gromacs-2021.6.ebuild| 1 +
 sci-chemistry/gromacs/gromacs-2021..ebuild | 1 +
 sci-chemistry/gromacs/gromacs-2022.3.ebuild| 1 +
 sci-chemistry/gromacs/gromacs-2022.4.ebuild| 1 +
 sci-chemistry/gromacs/gromacs-2022..ebuild | 1 +
 sci-chemistry/gromacs/gromacs-2023..ebuild | 1 +
 sci-chemistry/gromacs/gromacs-2023_rc1.ebuild  | 1 +
 sci-chemistry/gromacs/gromacs-.ebuild  | 1 +
 15 files changed, 15 insertions(+)

diff --git a/sci-chemistry/gromacs/gromacs-2018.8-r1.ebuild 
b/sci-chemistry/gromacs/gromacs-2018.8-r1.ebuild
index 8933f1086eac..255810902b42 100644
--- a/sci-chemistry/gromacs/gromacs-2018.8-r1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2018.8-r1.ebuild
@@ -48,6 +48,7 @@ RDEPEND="${CDEPEND}"
 REQUIRED_USE="
|| ( single-precision double-precision )
cuda? ( single-precision )
+   opencl? ( single-precision )
cuda? ( !opencl )
mkl? ( !blas !fftw !lapack )"
 

diff --git a/sci-chemistry/gromacs/gromacs-2019.6-r1.ebuild 
b/sci-chemistry/gromacs/gromacs-2019.6-r1.ebuild
index 7999d7a192fd..bf9f493d1163 100644
--- a/sci-chemistry/gromacs/gromacs-2019.6-r1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2019.6-r1.ebuild
@@ -50,6 +50,7 @@ RDEPEND="${CDEPEND}"
 REQUIRED_USE="
|| ( single-precision double-precision )
cuda? ( single-precision )
+   opencl? ( single-precision )
cuda? ( !opencl )
mkl? ( !blas !fftw !lapack )
${PYTHON_REQUIRED_USE}"

diff --git a/sci-chemistry/gromacs/gromacs-2019.6-r2.ebuild 
b/sci-chemistry/gromacs/gromacs-2019.6-r2.ebuild
index 991c92890086..ea9f998593a4 100644
--- a/sci-chemistry/gromacs/gromacs-2019.6-r2.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2019.6-r2.ebuild
@@ -50,6 +50,7 @@ RDEPEND="${CDEPEND}"
 REQUIRED_USE="
|| ( single-precision double-precision )
cuda? ( single-precision )
+   opencl? ( single-precision )
cuda? ( !opencl )
mkl? ( !blas !fftw !lapack )
${PYTHON_REQUIRED_USE}"

diff --git a/sci-chemistry/gromacs/gromacs-2020.4-r1.ebuild 
b/sci-chemistry/gromacs/gromacs-2020.4-r1.ebuild
index 78df12fce7b2..a1a975ee8107 100644
--- a/sci-chemistry/gromacs/gromacs-2020.4-r1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2020.4-r1.ebuild
@@ -76,6 +76,7 @@ REQUIRED_USE="
|| ( single-precision double-precision )
doc? ( !build-manual )
cuda? ( single-precision )
+   opencl? ( single-precision )
cuda? ( !opencl )
mkl? ( !blas !fftw !lapack )
${PYTHON_REQUIRED_USE}"

diff --git a/sci-chemistry/gromacs/gromacs-2020.7.ebuild 
b/sci-chemistry/gromacs/gromacs-2020.7.ebuild
index 30ae2a339b00..afbf991e279f 100644
--- a/sci-chemistry/gromacs/gromacs-2020.7.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2020.7.ebuild
@@ -76,6 +76,7 @@ REQUIRED_USE="
|| ( single-precision double-precision )
doc? ( !build-manual )
cuda? ( single-precision )
+   opencl? ( single-precision )
cuda? ( !opencl )
mkl? ( !blas !fftw !lapack )
${PYTHON_REQUIRED_USE}"

diff --git a/sci-chemistry/gromacs/gromacs-2021.3-r1.ebuild 
b/sci-chemistry/gromacs/gromacs-2021.3-r1.ebuild
index af9a28c8f506..f55212f3bdc7 100644
--- a/sci-chemistry/gromacs/gromacs-2021.3-r1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2021.3-r1.ebuild
@@ -76,6 +76,7 @@ REQUIRED_USE="
|| ( single-precision double-precision )
doc? ( !build-manual )
cuda? ( single-precision )
+   opencl? ( single-precision )
cuda? ( !opencl )
mkl? ( !blas !fftw !lapack )
${PYTHON_REQUIRED_USE}"

diff --git a/sci-chemistry/gromacs/gromacs-2021.5.ebuild 
b/sci-chemistry/gromacs/gromacs-2021.5.ebuild
index 81c13a98d102..0a8e8fdc1642 100644
--- a/sci-chemistry/gromacs/gromacs-2021.5.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2021.5.ebuild
@@ -76,6 +76,7 @@ REQUIRED_USE="
|| ( single-precision double-precision )
doc? ( !build-manual )
cuda? ( single-precision )
+   opencl? ( single-precision )

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2022-12-20 Thread Alexey Shvetsov

commit: 478021fb91ad87a334fe29a1fc584bef7e7e6566
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Tue Dec 20 21:05:40 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Tue Dec 20 21:06:08 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=478021fb

sci-chemistry/gromacs: remove mkl-10 hack

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/gromacs-2018.8-r1.ebuild | 5 -
 sci-chemistry/gromacs/gromacs-2019.6-r1.ebuild | 5 -
 sci-chemistry/gromacs/gromacs-2019.6-r2.ebuild | 5 -
 sci-chemistry/gromacs/gromacs-2020.4-r1.ebuild | 5 -
 sci-chemistry/gromacs/gromacs-2020.7.ebuild| 5 -
 sci-chemistry/gromacs/gromacs-2021.3-r1.ebuild | 5 -
 sci-chemistry/gromacs/gromacs-2021.5.ebuild| 5 -
 sci-chemistry/gromacs/gromacs-2021.6.ebuild| 5 -
 sci-chemistry/gromacs/gromacs-2021..ebuild | 5 -
 sci-chemistry/gromacs/gromacs-2022.3.ebuild| 5 -
 sci-chemistry/gromacs/gromacs-2022.4.ebuild| 5 -
 sci-chemistry/gromacs/gromacs-2022..ebuild | 5 -
 sci-chemistry/gromacs/gromacs-2023..ebuild | 5 -
 sci-chemistry/gromacs/gromacs-2023_rc1.ebuild  | 5 -
 sci-chemistry/gromacs/gromacs-.ebuild  | 5 -
 15 files changed, 75 deletions(-)

diff --git a/sci-chemistry/gromacs/gromacs-2018.8-r1.ebuild 
b/sci-chemistry/gromacs/gromacs-2018.8-r1.ebuild
index a26f3ea46d56..8933f1086eac 100644
--- a/sci-chemistry/gromacs/gromacs-2018.8-r1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2018.8-r1.ebuild
@@ -106,11 +106,6 @@ src_configure() {
 
if use fftw; then
fft_opts=( -DGMX_FFT_LIBRARY=fftw3 )
-   elif use mkl && has_version "=sci-libs/mkl-10*"; then
-   fft_opts=( -DGMX_FFT_LIBRARY=mkl
-   -DMKL_INCLUDE_DIR="${MKLROOT}/include"
-   -DMKL_LIBRARIES="$(echo 
/opt/intel/mkl/10.0.5.025/lib/*/libmkl.so);$(echo 
/opt/intel/mkl/10.0.5.025/lib/*/libiomp*.so)"
-   )
elif use mkl; then
local bits=$(get_libdir)
fft_opts=( -DGMX_FFT_LIBRARY=mkl

diff --git a/sci-chemistry/gromacs/gromacs-2019.6-r1.ebuild 
b/sci-chemistry/gromacs/gromacs-2019.6-r1.ebuild
index 1a1a44ea6d18..7999d7a192fd 100644
--- a/sci-chemistry/gromacs/gromacs-2019.6-r1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2019.6-r1.ebuild
@@ -109,11 +109,6 @@ src_configure() {
 
if use fftw; then
fft_opts=( -DGMX_FFT_LIBRARY=fftw3 )
-   elif use mkl && has_version "=sci-libs/mkl-10*"; then
-   fft_opts=( -DGMX_FFT_LIBRARY=mkl
-   -DMKL_INCLUDE_DIR="${MKLROOT}/include"
-   -DMKL_LIBRARIES="$(echo 
/opt/intel/mkl/10.0.5.025/lib/*/libmkl.so);$(echo 
/opt/intel/mkl/10.0.5.025/lib/*/libiomp*.so)"
-   )
elif use mkl; then
local bits=$(get_libdir)
fft_opts=( -DGMX_FFT_LIBRARY=mkl

diff --git a/sci-chemistry/gromacs/gromacs-2019.6-r2.ebuild 
b/sci-chemistry/gromacs/gromacs-2019.6-r2.ebuild
index a81288076d3a..991c92890086 100644
--- a/sci-chemistry/gromacs/gromacs-2019.6-r2.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2019.6-r2.ebuild
@@ -111,11 +111,6 @@ src_configure() {
 
if use fftw; then
fft_opts=( -DGMX_FFT_LIBRARY=fftw3 )
-   elif use mkl && has_version "=sci-libs/mkl-10*"; then
-   fft_opts=( -DGMX_FFT_LIBRARY=mkl
-   -DMKL_INCLUDE_DIR="${MKLROOT}/include"
-   -DMKL_LIBRARIES="$(echo 
/opt/intel/mkl/10.0.5.025/lib/*/libmkl.so);$(echo 
/opt/intel/mkl/10.0.5.025/lib/*/libiomp*.so)"
-   )
elif use mkl; then
local bits=$(get_libdir)
fft_opts=( -DGMX_FFT_LIBRARY=mkl

diff --git a/sci-chemistry/gromacs/gromacs-2020.4-r1.ebuild 
b/sci-chemistry/gromacs/gromacs-2020.4-r1.ebuild
index 1b2e86c8a65f..78df12fce7b2 100644
--- a/sci-chemistry/gromacs/gromacs-2020.4-r1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2020.4-r1.ebuild
@@ -181,11 +181,6 @@ src_configure() {
 
if use fftw; then
fft_opts=( -DGMX_FFT_LIBRARY=fftw3 )
-   elif use mkl && has_version "=sci-libs/mkl-10*"; then
-   fft_opts=( -DGMX_FFT_LIBRARY=mkl
-   -DMKL_INCLUDE_DIR="${MKLROOT}/include"
-   -DMKL_LIBRARIES="$(echo 
/opt/intel/mkl/10.0.5.025/lib/*/libmkl.so);$(echo 
/opt/intel/mkl/10.0.5.025/lib/*/libiomp*.so)"
-   )
elif use mkl; then
local bits=$(get_libdir)
fft_opts=( -DGMX_FFT_LIBRARY=mkl

diff --git a/sci-chemistry/gromacs/gromacs-2020.7.ebuild 
b/sci-chemistry/gromacs/gromacs-2020.7.ebuild
index 9af3d2969914..30ae2a339b00 100644
--- a/sci-chemistry/gromacs/gromacs-2020.7.ebuild
+++ b/sci-chemistry/g

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2022-12-20 Thread Alexey Shvetsov

commit: 7b6d46ff9ff7cc9ea88b1033c7a17be52cd2dbce
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Tue Dec 20 20:50:46 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Tue Dec 20 20:51:23 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7b6d46ff

sci-chemistry/gromacs: Make all uris https

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/Manifest |  2 +-
 sci-chemistry/gromacs/gromacs-2018.8-r1.ebuild |  6 +++---
 sci-chemistry/gromacs/gromacs-2019.6-r1.ebuild |  8 +++
 sci-chemistry/gromacs/gromacs-2019.6-r2.ebuild |  8 +++
 sci-chemistry/gromacs/gromacs-2020.4-r1.ebuild |  6 +++---
 sci-chemistry/gromacs/gromacs-2020.7.ebuild|  6 +++---
 sci-chemistry/gromacs/gromacs-2021.3-r1.ebuild |  6 +++---
 sci-chemistry/gromacs/gromacs-2021.5.ebuild|  6 +++---
 sci-chemistry/gromacs/gromacs-2021.6.ebuild|  6 +++---
 sci-chemistry/gromacs/gromacs-2021..ebuild |  6 +++---
 sci-chemistry/gromacs/gromacs-2022.3.ebuild|  6 +++---
 sci-chemistry/gromacs/gromacs-2022.4.ebuild|  6 +++---
 sci-chemistry/gromacs/gromacs-2022..ebuild | 28 ++--
 sci-chemistry/gromacs/gromacs-2023..ebuild | 30 --
 sci-chemistry/gromacs/gromacs-2023_rc1.ebuild  | 30 --
 sci-chemistry/gromacs/gromacs-.ebuild  | 30 --
 16 files changed, 127 insertions(+), 63 deletions(-)

diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest
index af8f062468c0..48bb6ecb5abb 100644
--- a/sci-chemistry/gromacs/Manifest
+++ b/sci-chemistry/gromacs/Manifest
@@ -17,7 +17,7 @@ DIST manual-2021.5.pdf 12253641 BLAKE2B 
8850715a2bb21345e1c9735aca1a5dd2ad916e5a
 DIST manual-2021.6.pdf 12256595 BLAKE2B 
5d808e38571b38c1f6e0d115f6e604238206cc001f59d05ed855e80c324c0e6fd7767adb723b3d0edd1267ae5973a3b83b76bd04d2dc99769e6440600d8e2146
 SHA512 
64fe56422d7417f6f61b10346c99e24c3f423f0cedc3794e0809250282bc87ef692b47ae6c3f95ad7994aa3860ed82035cbacc76eb78a2f54a29052a05260af2
 DIST manual-2022.3.pdf 13080874 BLAKE2B 
3e70da8f70281c78084f5f9af86cdcda187c7b3085f08d95487992a65e31b7dae0b3e66d914dc0bccaf1bfe4c672d2018f38d0bde679759545aca55d1df1f554
 SHA512 
f634eac722d4a6f77820ef46024d9209de97fb6afb52333f200c2717049d8d09e31f0ef7bac8f154d79ae43fa31541ed6c3d839dd088433222ebdace298b5fae
 DIST manual-2022.4.pdf 13080976 BLAKE2B 
45685fa1d727aa30425e946ac72e0bd723528032e3fb45525d3c025316ee2682ea3c9cc2fd75b5cd4e900adbc6e7f577e3368d9e0681294fd1515df3d2e5d840
 SHA512 
a7ac3a80a90f14b6917e15633d77230d24cdcf19ade38d14b35c6451074848a7754b33c612e2a26a657f2edd3d6710e5a8130cacb107d4085d1bd934267ad623
-DIST manual-2023_rc1.pdf 13506754 BLAKE2B 
9487753e788fa5b2d01255717769e0b01cf7adcb4ae99a1f37f4ad0f8acccfbf4eff0a4c76add63bc82bffdf844cf8dd1d858d15a6bacd6635ec3a3474e10f6f
 SHA512 
f26df914402793c656a798847524c0b9207a4163bb36d6cb90740a699418719f7b124343b4886e50d92023c14f8c1e61e950c12b8e1e4702007e34677cd17ef2
+DIST manual-2023-rc1.pdf 13506754 BLAKE2B 
9487753e788fa5b2d01255717769e0b01cf7adcb4ae99a1f37f4ad0f8acccfbf4eff0a4c76add63bc82bffdf844cf8dd1d858d15a6bacd6635ec3a3474e10f6f
 SHA512 
f26df914402793c656a798847524c0b9207a4163bb36d6cb90740a699418719f7b124343b4886e50d92023c14f8c1e61e950c12b8e1e4702007e34677cd17ef2
 DIST regressiontests-2018.8.tar.gz 67855469 BLAKE2B 
34c9b339f6229f483afbb5192ee6ba8b8f72d5c26907a853af9c53dfece0d88739e48f6b44b78d1c010f988f9385d077285300522164f533a5861e9dda879275
 SHA512 
3642389d27bd1942cd0f091c940ae97b197b94856a387fe581dc516b0d4169480f16551d4ba357f9282b3337d605c286d51dd38112ac87c826dda634904836bb
 DIST regressiontests-2019.6.tar.gz 67643195 BLAKE2B 
1e054e24b187946f7ea28090d4f20cf8e1d79a26253f57ba07d130e0773d8541b8a1552a38023d31a68ce8bc62d8e0af1d98609234bb3e7d3e6d567307ebb386
 SHA512 
eacf1c55b982515a305c29459fe80a7cd558a8481e5689962aa956148af542568b1d1ce59c6784ecb0afd4768c2b664afa21e12af2d89ae2b06b1ba61ad72036
 DIST regressiontests-2020.4.tar.gz 48542144 BLAKE2B 
1dcde67525d40ababa74d9e8ba2dd3fdef1de7d1018491e102edd71d3a622925f213b5a0812e5448882b4cb5fb578317e8e5029bdc4bd53008aa8441a3d9dea1
 SHA512 
7c71f36a1cef22562f14dcd233e90ad2fe370ae1a7d3b5268727259b374e12d4754253735ac8745d3738bdbc1cc2067780fda5e393be2ff264f632fe4e0c1978

diff --git a/sci-chemistry/gromacs/gromacs-2018.8-r1.ebuild 
b/sci-chemistry/gromacs/gromacs-2018.8-r1.ebuild
index fb79ed729b5a..a26f3ea46d56 100644
--- a/sci-chemistry/gromacs/gromacs-2018.8-r1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2018.8-r1.ebuild
@@ -8,15 +8,15 @@ CMAKE_MAKEFILE_GENERATOR="ninja"
 inherit bash-completion-r1 cmake cuda readme.gentoo-r1 toolchain-funcs 
xdg-utils
 
 SRC_URI="
-   http://ftp.gromacs.org/gromacs/${PN}-${PV/_/-}.tar.gz
-   doc? ( http://ftp.gromacs.org/manual/manual-${PV/_/-}.pdf )
+   https://ftp.gromacs.org/gromacs/${PN}-${PV/_/-}.tar.gz
+   doc? ( https://ftp.gromacs.org/manual/manual-${PV/_/-}.pdf )
test? (

[gentoo-commits] repo/gentoo:master commit in: dev-cpp/muParser/

2022-12-20 Thread Alexey Shvetsov

commit: 71112de50094452f8454ace5619db6e471a56398
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Tue Dec 20 18:38:37 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Tue Dec 20 18:38:37 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=71112de5

dev-cpp/muParser: add 2.3.4

Signed-off-by: Alexey Shvetsov  gentoo.org>

 dev-cpp/muParser/Manifest  |  1 +
 dev-cpp/muParser/muParser-2.3.4.ebuild | 36 ++
 2 files changed, 37 insertions(+)

diff --git a/dev-cpp/muParser/Manifest b/dev-cpp/muParser/Manifest
index 2a400643c4b5..71a9a28a4c96 100644
--- a/dev-cpp/muParser/Manifest
+++ b/dev-cpp/muParser/Manifest
@@ -1,2 +1,3 @@
 DIST muParser-2.3.2.tar.gz 103979 BLAKE2B 
f892b4d440a1b7326be27aa0a2b703ccafc02de5e881ef4780e8907688cf7905284f3e5f5855ad2596683f1dad309d287ebae527d917ebf5e0dad045551df7de
 SHA512 
8ef5c8b3834da3995a782b7364a4eb4197fb706bee4cadabe5511d2a9cf2912c3db6de422a91eff7f9690f8c9c355b9900335e940749d5c243cb732ac1992aef
 DIST muParser-2.3.3.tar.gz 112100 BLAKE2B 
79a0a29781596f114aeea9756a5a2141eed19857c08d0a32093353eb049f8b179af577cbd07747d2b8093e448714397b47f36c68e54bbce22386f5ec06365bda
 SHA512 
f7e01c83f6ffe71e240653c47fdb8f3152d7fdf61b5997a3c717dec50d0175065c4fc4241ec95fb35b60b968c5c965a820009163ebe84f0fa57d64b3a23226b4
+DIST muParser-2.3.4.tar.gz 112693 BLAKE2B 
860c24d45140ad4339efcd5f5c221454c051565a1362907fd01499cfda0ef3c304333507c4d9c43644dac63e5fb4963fef6e3a2e565febf1a80807e0a0242c87
 SHA512 
5226fd666eaf3ff7e661bbf72e60114d0ceed10491ffa4ed2dd34cd669c6c21c037eff0388402d6b9d60b0a5a27b03ca35153e0c048328abc75dfd1eaf38ceca

diff --git a/dev-cpp/muParser/muParser-2.3.4.ebuild 
b/dev-cpp/muParser/muParser-2.3.4.ebuild
new file mode 100644
index ..4dd7dfcdf406
--- /dev/null
+++ b/dev-cpp/muParser/muParser-2.3.4.ebuild
@@ -0,0 +1,36 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+inherit cmake
+
+DESCRIPTION="Library for parsing mathematical expressions"
+HOMEPAGE="https://beltoforion.de/en/muparser/;
+SRC_URI="https://github.com/beltoforion/muparser/archive/refs/tags/v${PV}.tar.gz
 -> ${P}.tar.gz"
+S="${WORKDIR}"/muparser-${PV}
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~arm ~arm64 ~loong ~ppc ~ppc64 ~riscv ~x86 ~amd64-linux 
~x86-linux ~ppc-macos"
+IUSE="doc openmp test wchar"
+RESTRICT="!test? ( test )"
+
+PATCHES=(
+)
+
+src_configure() {
+   mycmakeargs=(
+   -DENABLE_OPENMP=$(usex openmp)
+   -DENABLE_WIDE_CHAR=$(usex wchar)
+   )
+   cmake_src_configure
+}
+
+src_test() {
+   cmake_src_compile test
+}
+
+src_install() {
+   cmake_src_install
+}

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2022-12-20 Thread Alexey Shvetsov

commit: 258d48996c52975fa030245594900377718aded6
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Tue Dec 20 18:40:08 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Tue Dec 20 18:40:08 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=258d4899

sci-chemistry/gromacs: Add 2023.x release series

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/Manifest  | 3 +++
 .../gromacs/{gromacs-.ebuild => gromacs-2023..ebuild}   | 6 ++
 .../gromacs/{gromacs-.ebuild => gromacs-2023_rc1.ebuild}| 6 ++
 sci-chemistry/gromacs/gromacs-.ebuild   | 6 ++
 4 files changed, 9 insertions(+), 12 deletions(-)

diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest
index dfce80d8c894..af8f062468c0 100644
--- a/sci-chemistry/gromacs/Manifest
+++ b/sci-chemistry/gromacs/Manifest
@@ -7,6 +7,7 @@ DIST gromacs-2021.5.tar.gz 38023772 BLAKE2B 
45e1f080b86626423e471f06b48b615db191
 DIST gromacs-2021.6.tar.gz 38012702 BLAKE2B 
023ae37dc53643758afa050fd179cd66f3c6d6266f6afceee5eb35c890a3ae284956f2bc2409156d6e1fa03a7f23f7b04c27e1820547fd5f147b344d94da7d40
 SHA512 
65d7874e5cd838ce4f29d033c66304738ccc30f1987f9f8541725058b2fc4551302a399f6ce773e81ac9485963187c48feaf92c71789f4c345c82bd335f806a7
 DIST gromacs-2022.3.tar.gz 40359623 BLAKE2B 
23beacf7208df89aea6c3effe483361451a9ff20428fe79ec163a5eee4dc0db0bb00a2bee84bc9377ad272f216fd372eab1b77e8542ce231ac785b41b582fa15
 SHA512 
1a6a1674ed17dfd93dcd51537cd13c9df5bb9bd91c3a26601032f83b788a93689bac8070eb8e495a786d41cc9d474885538cbaffa4229da70dfa640ee42b7c60
 DIST gromacs-2022.4.tar.gz 40352282 BLAKE2B 
616ba05a70a483d7d8fadefb383ac9fc8825ac09ea92f55a0222c57ac91e4a045fb55405ec963303d8dbabb04b3d1f8c73062785b3812b3c6b7582e002dc5538
 SHA512 
15c642f2b63c1731a01a3b58c13d454f57c29607554a6693c2e62f38da574c6d596c5cb6f361e0feb5e1069b3b19bb49ceaa432c030da91f48e41654e3e6a62f
+DIST gromacs-2023-rc1.tar.gz 41863824 BLAKE2B 
c365ccd83b8f271be8f1a515f4dc0ebd729ce43023e979a52046fc827e786f84f09de894af9b8da4f7ce6e06a1ae050e8ff387892f76787857327ce2bc397042
 SHA512 
7ab8158624e0c93c0f06bd7023b97012d80afa5e068cb4489e7e9700171a5a8f69ae042bf0256c78aaec527d9a1b88f5f2dce6c8c7d4f46a457b6a9568b70f45
 DIST manual-2018.8.pdf 10025023 BLAKE2B 
afb0a6e6a72d78df743fcb57e7c1716848589e571dd35167b957a9b407ca27978ccfb6cb9e0df9c9439b888f352501a00ba32281ed1e0b4193bd606f1d77152e
 SHA512 
b1972f7ce965bfc9377542993c5943ea4868a8ed23a969d4203264746d6bea3a7a65c6379196ece37fd6d68ec7ec80f827bde87d1049284af7082759a124f1d5
 DIST manual-2019.6.pdf 12702376 BLAKE2B 
c350127bc06a9eb3dee73da39037c84daeb89500e23cb131bd19a150bf60602d4dde7611e0c6f0f344af4093e96a899303dac71b4df56fd0c44c3a48a56606b7
 SHA512 
dfdff67c2c1c9ce1f1c236b7686c5331b0fe86951da6c98eddd6a3e748815e0be0a9653ae4318469fcdd913c4e7c355d64a997cc80b9d9fbe6282ef6d98e61eb
 DIST manual-2020.4.pdf 11851608 BLAKE2B 
7b7bdf08e8946fcc448543b08391b94a67fee60a8c810597c1f09f70443f9d7db817c99622dd0c21c6317f5fdcd6c4a88589ecac57055cb0cd8597d6021026e7
 SHA512 
928555663c77de36393e625c29d388d4e1c8c1298e7a993d871839e0d4d8d18d190221ad8f1d975bd072bdd6a061e9ea5b9295f2ecf45f24b6523ea5ea290fed
@@ -16,6 +17,7 @@ DIST manual-2021.5.pdf 12253641 BLAKE2B 
8850715a2bb21345e1c9735aca1a5dd2ad916e5a
 DIST manual-2021.6.pdf 12256595 BLAKE2B 
5d808e38571b38c1f6e0d115f6e604238206cc001f59d05ed855e80c324c0e6fd7767adb723b3d0edd1267ae5973a3b83b76bd04d2dc99769e6440600d8e2146
 SHA512 
64fe56422d7417f6f61b10346c99e24c3f423f0cedc3794e0809250282bc87ef692b47ae6c3f95ad7994aa3860ed82035cbacc76eb78a2f54a29052a05260af2
 DIST manual-2022.3.pdf 13080874 BLAKE2B 
3e70da8f70281c78084f5f9af86cdcda187c7b3085f08d95487992a65e31b7dae0b3e66d914dc0bccaf1bfe4c672d2018f38d0bde679759545aca55d1df1f554
 SHA512 
f634eac722d4a6f77820ef46024d9209de97fb6afb52333f200c2717049d8d09e31f0ef7bac8f154d79ae43fa31541ed6c3d839dd088433222ebdace298b5fae
 DIST manual-2022.4.pdf 13080976 BLAKE2B 
45685fa1d727aa30425e946ac72e0bd723528032e3fb45525d3c025316ee2682ea3c9cc2fd75b5cd4e900adbc6e7f577e3368d9e0681294fd1515df3d2e5d840
 SHA512 
a7ac3a80a90f14b6917e15633d77230d24cdcf19ade38d14b35c6451074848a7754b33c612e2a26a657f2edd3d6710e5a8130cacb107d4085d1bd934267ad623
+DIST manual-2023_rc1.pdf 13506754 BLAKE2B 
9487753e788fa5b2d01255717769e0b01cf7adcb4ae99a1f37f4ad0f8acccfbf4eff0a4c76add63bc82bffdf844cf8dd1d858d15a6bacd6635ec3a3474e10f6f
 SHA512 
f26df914402793c656a798847524c0b9207a4163bb36d6cb90740a699418719f7b124343b4886e50d92023c14f8c1e61e950c12b8e1e4702007e34677cd17ef2
 DIST regressiontests-2018.8.tar.gz 67855469 BLAKE2B 
34c9b339f6229f483afbb5192ee6ba8b8f72d5c26907a853af9c53dfece0d88739e48f6b44b78d1c010f988f9385d077285300522164f533a5861e9dda879275
 SHA512 
3642389d27bd1942cd0f091c940ae97b197b94856a387fe581dc516b0d4169480f16551d4ba357f9282b3337d605c286d51dd38112ac87c826dda634904836bb
 DIST regressiontests-2019.6.tar.gz 6

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2022-12-20 Thread Alexey Shvetsov

commit: 47b82f89a877ec68759c5a488473875e8184cc1a
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Tue Dec 20 18:23:24 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Tue Dec 20 18:24:57 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=47b82f89

sci-chemistry/gromacs: Fix pep517

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/gromacs-2020.4-r1.ebuild | 3 ++-
 sci-chemistry/gromacs/gromacs-2020.7.ebuild| 3 ++-
 sci-chemistry/gromacs/gromacs-2021.3-r1.ebuild | 3 ++-
 sci-chemistry/gromacs/gromacs-2021.5.ebuild| 3 ++-
 sci-chemistry/gromacs/gromacs-2021.6.ebuild| 3 ++-
 sci-chemistry/gromacs/gromacs-2021..ebuild | 3 ++-
 sci-chemistry/gromacs/gromacs-.ebuild  | 3 ++-
 7 files changed, 14 insertions(+), 7 deletions(-)

diff --git a/sci-chemistry/gromacs/gromacs-2020.4-r1.ebuild 
b/sci-chemistry/gromacs/gromacs-2020.4-r1.ebuild
index 178926f0014d..90ca3b46ae0a 100644
--- a/sci-chemistry/gromacs/gromacs-2020.4-r1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2020.4-r1.ebuild
@@ -7,7 +7,8 @@ CMAKE_MAKEFILE_GENERATOR="ninja"
 
 PYTHON_COMPAT=( python3_{8..11} )
 
-DISTUTILS_USE_SETUPTOOLS=no
+DISTUTILS_OPTIONAL=1
+DISTUTILS_USE_PEP517=no
 DISTUTILS_SINGLE_IMPL=1
 
 inherit bash-completion-r1 cmake cuda distutils-r1 flag-o-matic 
readme.gentoo-r1 toolchain-funcs xdg-utils

diff --git a/sci-chemistry/gromacs/gromacs-2020.7.ebuild 
b/sci-chemistry/gromacs/gromacs-2020.7.ebuild
index de3335b0e75c..ef73982121ff 100644
--- a/sci-chemistry/gromacs/gromacs-2020.7.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2020.7.ebuild
@@ -7,7 +7,8 @@ CMAKE_MAKEFILE_GENERATOR="ninja"
 
 PYTHON_COMPAT=( python3_{8..11} )
 
-DISTUTILS_USE_SETUPTOOLS=no
+DISTUTILS_OPTIONAL=1
+DISTUTILS_USE_PEP517=no
 DISTUTILS_SINGLE_IMPL=1
 
 inherit bash-completion-r1 cmake cuda distutils-r1 flag-o-matic 
readme.gentoo-r1 toolchain-funcs xdg-utils

diff --git a/sci-chemistry/gromacs/gromacs-2021.3-r1.ebuild 
b/sci-chemistry/gromacs/gromacs-2021.3-r1.ebuild
index 68d9a92c288d..c8f88acab2c3 100644
--- a/sci-chemistry/gromacs/gromacs-2021.3-r1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2021.3-r1.ebuild
@@ -7,7 +7,8 @@ CMAKE_MAKEFILE_GENERATOR="ninja"
 
 PYTHON_COMPAT=( python3_{8..11} )
 
-DISTUTILS_USE_SETUPTOOLS=no
+DISTUTILS_OPTIONAL=1
+DISTUTILS_USE_PEP517=no
 DISTUTILS_SINGLE_IMPL=1
 
 inherit bash-completion-r1 cmake cuda distutils-r1 flag-o-matic 
readme.gentoo-r1 toolchain-funcs xdg-utils

diff --git a/sci-chemistry/gromacs/gromacs-2021.5.ebuild 
b/sci-chemistry/gromacs/gromacs-2021.5.ebuild
index 2f7f4f77115a..c3df9c15d1d4 100644
--- a/sci-chemistry/gromacs/gromacs-2021.5.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2021.5.ebuild
@@ -7,7 +7,8 @@ CMAKE_MAKEFILE_GENERATOR="ninja"
 
 PYTHON_COMPAT=( python3_{8..11} )
 
-DISTUTILS_USE_SETUPTOOLS=no
+DISTUTILS_OPTIONAL=1
+DISTUTILS_USE_PEP517=no
 DISTUTILS_SINGLE_IMPL=1
 
 inherit bash-completion-r1 cmake cuda distutils-r1 flag-o-matic 
readme.gentoo-r1 toolchain-funcs xdg-utils

diff --git a/sci-chemistry/gromacs/gromacs-2021.6.ebuild 
b/sci-chemistry/gromacs/gromacs-2021.6.ebuild
index 2f7f4f77115a..c3df9c15d1d4 100644
--- a/sci-chemistry/gromacs/gromacs-2021.6.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2021.6.ebuild
@@ -7,7 +7,8 @@ CMAKE_MAKEFILE_GENERATOR="ninja"
 
 PYTHON_COMPAT=( python3_{8..11} )
 
-DISTUTILS_USE_SETUPTOOLS=no
+DISTUTILS_OPTIONAL=1
+DISTUTILS_USE_PEP517=no
 DISTUTILS_SINGLE_IMPL=1
 
 inherit bash-completion-r1 cmake cuda distutils-r1 flag-o-matic 
readme.gentoo-r1 toolchain-funcs xdg-utils

diff --git a/sci-chemistry/gromacs/gromacs-2021..ebuild 
b/sci-chemistry/gromacs/gromacs-2021..ebuild
index af0fa65d05eb..44a39087816b 100644
--- a/sci-chemistry/gromacs/gromacs-2021..ebuild
+++ b/sci-chemistry/gromacs/gromacs-2021..ebuild
@@ -7,7 +7,8 @@ CMAKE_MAKEFILE_GENERATOR="ninja"
 
 PYTHON_COMPAT=( python3_{8..11} )
 
-DISTUTILS_USE_SETUPTOOLS=no
+DISTUTILS_OPTIONAL=1
+DISTUTILS_USE_PEP517=no
 DISTUTILS_SINGLE_IMPL=1
 
 inherit bash-completion-r1 cmake cuda distutils-r1 flag-o-matic 
readme.gentoo-r1 toolchain-funcs xdg-utils

diff --git a/sci-chemistry/gromacs/gromacs-.ebuild 
b/sci-chemistry/gromacs/gromacs-.ebuild
index 2b70114b7ade..f8165b39b590 100644
--- a/sci-chemistry/gromacs/gromacs-.ebuild
+++ b/sci-chemistry/gromacs/gromacs-.ebuild
@@ -7,7 +7,8 @@ CMAKE_MAKEFILE_GENERATOR="ninja"
 
 PYTHON_COMPAT=( python3_{8..11} )
 
-DISTUTILS_USE_SETUPTOOLS=no
+DISTUTILS_OPTIONAL=1
+DISTUTILS_USE_PEP517=no
 DISTUTILS_SINGLE_IMPL=1
 
 inherit bash-completion-r1 cmake cuda distutils-r1 flag-o-matic 
readme.gentoo-r1 toolchain-funcs xdg-utils

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2022-12-20 Thread Alexey Shvetsov

commit: 8c604a370a315f2fe7ba2c9d128c21b760773c35
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Tue Dec 20 18:17:10 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Tue Dec 20 18:24:30 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8c604a37

sci-chemistry/gromacs: Add 2022.4 and fix pep517

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/Manifest  | 6 +++---
 sci-chemistry/gromacs/gromacs-2022.3.ebuild | 3 ++-
 .../gromacs/{gromacs-2022.2.ebuild => gromacs-2022.4.ebuild}| 3 ++-
 sci-chemistry/gromacs/gromacs-2022..ebuild  | 3 ++-
 4 files changed, 9 insertions(+), 6 deletions(-)

diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest
index f999c8f5def4..dfce80d8c894 100644
--- a/sci-chemistry/gromacs/Manifest
+++ b/sci-chemistry/gromacs/Manifest
@@ -5,8 +5,8 @@ DIST gromacs-2020.7.tar.gz 29175554 BLAKE2B 
98f1aa415946f8eb113febc81105f0c1b091
 DIST gromacs-2021.3.tar.gz 37987972 BLAKE2B 
d71995c7d5a34978246e33dc637ac3d273e547afcf72d1a107026650f03286ecdf27e4b9a70113b3c3a01af59ad49ac5c813aa6e5d2e8eb29fd05582a7a28d34
 SHA512 
da420917d06de2e192dfbb4e1b9f46989ed05b5c7e641c657104ed8f2bd8b22509bffd1ecfd7c965c80544eafa6af12d6d0aba7e1e7d9d14a4a88fb3fbf394a5
 DIST gromacs-2021.5.tar.gz 38023772 BLAKE2B 
45e1f080b86626423e471f06b48b615db1913048f9f6998da8ce45408339b32f829d33dd2af57297a7d307fcffd556c333a58c309ee0f2adb021ca3755619b05
 SHA512 
56c1b312fc8e52ec6f86e445d2fa2d07107c461b35d4dc8cdf95580f05fd8e6c5fd671d0e72b2b9e74e3232bc8c41db496fe4bcaf2b9a3ae3c2cfa93489a31c5
 DIST gromacs-2021.6.tar.gz 38012702 BLAKE2B 
023ae37dc53643758afa050fd179cd66f3c6d6266f6afceee5eb35c890a3ae284956f2bc2409156d6e1fa03a7f23f7b04c27e1820547fd5f147b344d94da7d40
 SHA512 
65d7874e5cd838ce4f29d033c66304738ccc30f1987f9f8541725058b2fc4551302a399f6ce773e81ac9485963187c48feaf92c71789f4c345c82bd335f806a7
-DIST gromacs-2022.2.tar.gz 40350604 BLAKE2B 
789c8abc13b5c64af6b9d66efcf70449330b7e6a4bc127ba299e36eea925e9485809c11480ffd857805d9b453df363ce9bb05bc54b439801334767651defc0ef
 SHA512 
9f33518d2035afb37fc40377e575d497ff32bef2adb702669b35b1b51b1694b1113c5634fa6febd41955b6dfbfd055e7d523e1919bda1bf169a6d0c25700cef7
 DIST gromacs-2022.3.tar.gz 40359623 BLAKE2B 
23beacf7208df89aea6c3effe483361451a9ff20428fe79ec163a5eee4dc0db0bb00a2bee84bc9377ad272f216fd372eab1b77e8542ce231ac785b41b582fa15
 SHA512 
1a6a1674ed17dfd93dcd51537cd13c9df5bb9bd91c3a26601032f83b788a93689bac8070eb8e495a786d41cc9d474885538cbaffa4229da70dfa640ee42b7c60
+DIST gromacs-2022.4.tar.gz 40352282 BLAKE2B 
616ba05a70a483d7d8fadefb383ac9fc8825ac09ea92f55a0222c57ac91e4a045fb55405ec963303d8dbabb04b3d1f8c73062785b3812b3c6b7582e002dc5538
 SHA512 
15c642f2b63c1731a01a3b58c13d454f57c29607554a6693c2e62f38da574c6d596c5cb6f361e0feb5e1069b3b19bb49ceaa432c030da91f48e41654e3e6a62f
 DIST manual-2018.8.pdf 10025023 BLAKE2B 
afb0a6e6a72d78df743fcb57e7c1716848589e571dd35167b957a9b407ca27978ccfb6cb9e0df9c9439b888f352501a00ba32281ed1e0b4193bd606f1d77152e
 SHA512 
b1972f7ce965bfc9377542993c5943ea4868a8ed23a969d4203264746d6bea3a7a65c6379196ece37fd6d68ec7ec80f827bde87d1049284af7082759a124f1d5
 DIST manual-2019.6.pdf 12702376 BLAKE2B 
c350127bc06a9eb3dee73da39037c84daeb89500e23cb131bd19a150bf60602d4dde7611e0c6f0f344af4093e96a899303dac71b4df56fd0c44c3a48a56606b7
 SHA512 
dfdff67c2c1c9ce1f1c236b7686c5331b0fe86951da6c98eddd6a3e748815e0be0a9653ae4318469fcdd913c4e7c355d64a997cc80b9d9fbe6282ef6d98e61eb
 DIST manual-2020.4.pdf 11851608 BLAKE2B 
7b7bdf08e8946fcc448543b08391b94a67fee60a8c810597c1f09f70443f9d7db817c99622dd0c21c6317f5fdcd6c4a88589ecac57055cb0cd8597d6021026e7
 SHA512 
928555663c77de36393e625c29d388d4e1c8c1298e7a993d871839e0d4d8d18d190221ad8f1d975bd072bdd6a061e9ea5b9295f2ecf45f24b6523ea5ea290fed
@@ -14,8 +14,8 @@ DIST manual-2020.7.pdf 11850780 BLAKE2B 
38594e87993badfbbcf47d6010a7f67d3c3426da
 DIST manual-2021.3.pdf 12255076 BLAKE2B 
6ca516b6832507c9d4100679d1f9bc9e3ab17d226849b050764b0d0626247dc57ce49985f9a7fc0061f3df278923a83faa367ca8ab91c37e5624dc584a51a822
 SHA512 
5d53798f30ea00fcb4e1b35f7eaa4bebfc05dafa4f2d0c197dcf2b57a624ad3a98b74fd90722e40d0ac13a6fff4ca231f9d6340f52ba94659c827c53c2f1cb16
 DIST manual-2021.5.pdf 12253641 BLAKE2B 
8850715a2bb21345e1c9735aca1a5dd2ad916e5a18881e7c9f3dda6f055ca12d9d379b74218138999ce50769efd8b9dd6447afbf70bbbefa2564dfb9fb276b91
 SHA512 
7635108c935e4953d722df6a16ee43edf97eef7e49f047218728f68f61f8f185192ff1d8b13a573b643b040955af211355a7b560c8a894c858d7f71249d41296
 DIST manual-2021.6.pdf 12256595 BLAKE2B 
5d808e38571b38c1f6e0d115f6e604238206cc001f59d05ed855e80c324c0e6fd7767adb723b3d0edd1267ae5973a3b83b76bd04d2dc99769e6440600d8e2146
 SHA512 
64fe56422d7417f6f61b10346c99e24c3f423f0cedc3794e0809250282bc87ef692b47ae6c3f95ad7994aa3860ed82035cbacc76eb78a2f54a29052a05260af2
-DIST manual-2022.2.pdf 1307

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/GromacsWrapper/

2022-10-29 Thread Alexey Shvetsov

commit: 535b60e5c35c65b15ddcd66739871003be0cb837
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Sat Oct 29 15:03:32 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Sat Oct 29 15:03:56 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=535b60e5

sci-chemistry/GromacsWrapper: add 0.8.2, drop 0.8.0-r1

Signed-off-by: Alexey Shvetsov  gentoo.org>

 ...GromacsWrapper-0.8.0-r1.ebuild => GromacsWrapper-0.8.2.ebuild} | 8 ++--
 sci-chemistry/GromacsWrapper/Manifest | 2 +-
 2 files changed, 3 insertions(+), 7 deletions(-)

diff --git a/sci-chemistry/GromacsWrapper/GromacsWrapper-0.8.0-r1.ebuild 
b/sci-chemistry/GromacsWrapper/GromacsWrapper-0.8.2.ebuild
similarity index 85%
rename from sci-chemistry/GromacsWrapper/GromacsWrapper-0.8.0-r1.ebuild
rename to sci-chemistry/GromacsWrapper/GromacsWrapper-0.8.2.ebuild
index e6354fb05f92..e1c1cccae2b8 100644
--- a/sci-chemistry/GromacsWrapper/GromacsWrapper-0.8.0-r1.ebuild
+++ b/sci-chemistry/GromacsWrapper/GromacsWrapper-0.8.2.ebuild
@@ -3,7 +3,8 @@
 
 EAPI=7
 
-PYTHON_COMPAT=( python3_{7..10} )
+PYTHON_COMPAT=( python3_{8..10} )
+DISTUTILS_USE_PEP517=setuptools
 
 if [[ ${PV} = ** ]]; then
scm_eclass=git-r3
@@ -37,8 +38,3 @@ BDEPEND="
 "
 
 distutils_enable_tests pytest
-
-PATCHES=(
-   # https://github.com/Becksteinlab/GromacsWrapper/issues/182
-   "${FILESDIR}"/${P}-tests-package.patch
-)

diff --git a/sci-chemistry/GromacsWrapper/Manifest 
b/sci-chemistry/GromacsWrapper/Manifest
index 693953f072e3..38f5f6269fbc 100644
--- a/sci-chemistry/GromacsWrapper/Manifest
+++ b/sci-chemistry/GromacsWrapper/Manifest
@@ -1 +1 @@
-DIST GromacsWrapper-0.8.0.tar.gz 1205837 BLAKE2B 
3627e56df0dc6ba86caac67795416c7c8c187aaa4fac545600d17dcd799cb153feaab61a0f0632e051c4e9c0b4cd74f8e165156873e36bc53571bec78e5fca61
 SHA512 
da7215216c9a2b52094bb7e43e04f1b429c4893ba67b4bd850fe68e99f338813392fd9d0aa1b19d3398c694be964bc2badbf1b3623420da929ee4abcef18026f
+DIST GromacsWrapper-0.8.2.tar.gz 1954926 BLAKE2B 
c05995667f925a7519e07e59519e985693effa2fd511d228d236bff978d05430d422003e1360f9fda26564e40bb69183ae8e9b7334e0427c2b177f019df38a6a
 SHA512 
b8a3e7da43eaabaf0fe12f4c06ff80f018847f9386c16eb66c96b3840c66b79d02ee47e675c08ed81df0ef495261c3b557d64c62caac0e484f661ef6b3a5be73

[gentoo-commits] repo/gentoo:master commit in: dev-perl/Net-AMQP-RabbitMQ/

2022-10-25 Thread Alexey Shvetsov

commit: 0c40cfcf4461b8fcbb4c2d039b9418b5d1e63554
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Tue Oct 25 22:20:36 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Tue Oct 25 22:20:36 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0c40cfcf

dev-perl/Net-AMQP-RabbitMQ: add 2.40010

Signed-off-by: Alexey Shvetsov  gentoo.org>

 dev-perl/Net-AMQP-RabbitMQ/Manifest|  1 +
 .../Net-AMQP-RabbitMQ-2.40010.ebuild   | 48 ++
 2 files changed, 49 insertions(+)

diff --git a/dev-perl/Net-AMQP-RabbitMQ/Manifest 
b/dev-perl/Net-AMQP-RabbitMQ/Manifest
index c38c9defff69..64c40a0efaaf 100644
--- a/dev-perl/Net-AMQP-RabbitMQ/Manifest
+++ b/dev-perl/Net-AMQP-RabbitMQ/Manifest
@@ -1 +1,2 @@
 DIST Net-AMQP-RabbitMQ-2.40009.tar.gz 198363 BLAKE2B 
35aea3ba96b6b9cfaf8b8fa14d2a00326e4d64cc74d438ab59b6773f7ce67fd2ea7ded91a487eb20cdbe174c68825434839a8d7afb8e764e4a228e7088bba875
 SHA512 
2c0f53d59858e777fbc712c3bd06e3464783559dd9424c58a8fe586747e1d43aa4a607268484ec8bf4f10e979788ed5ea9558208096187c6e0c12a473e465459
+DIST Net-AMQP-RabbitMQ-2.40010.tar.gz 206449 BLAKE2B 
c7b3e8b9841fb10519da063088dd1f8b2aa9791d459ce88198610394d284c182147f22bf260c7291e36a9b56903499bc43991d029e02ff009709b38557b43bff
 SHA512 
1e0256a3903379031059723ca0d11182ed4ef5a4ae4053d47f57ae1d4c5f42b3a9c48b7fd3dceb057c492c179bc01484651bb063fb5bca4542185fdca7471b06

diff --git a/dev-perl/Net-AMQP-RabbitMQ/Net-AMQP-RabbitMQ-2.40010.ebuild 
b/dev-perl/Net-AMQP-RabbitMQ/Net-AMQP-RabbitMQ-2.40010.ebuild
new file mode 100644
index ..dc9f888eecc1
--- /dev/null
+++ b/dev-perl/Net-AMQP-RabbitMQ/Net-AMQP-RabbitMQ-2.40010.ebuild
@@ -0,0 +1,48 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DIST_AUTHOR="MSTEMLE"
+
+inherit perl-module
+
+DESCRIPTION="interact with RabbitMQ over AMQP using librabbitmq"
+
+LICENSE="|| ( Artistic GPL-1 GPL-2 GPL-3 )"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64"
+IUSE="test"
+
+RESTRICT="!test? ( test )"
+
+RDEPEND="
+   >=dev-perl/Math-Int64-0.540.0"
+
+BDEPEND="${RDEPEND}
+   >=virtual/perl-ExtUtils-MakeMaker-6.660.0
+   test? (
+   net-misc/rabbitmq-server
+   )
+"
+
+src_test() {
+   einfo "Starting rabbitmq"
+   local -x RABBITMQ_LOG_BASE="${T}/rabbitmq/log"
+   local -x RABBITMQ_MNESIA_BASE="${T}/rabbitmq/mnesia"
+   local -x RABBITMQ_LOGS="${T}/rabbitmq.log"
+   local -x RABBITMQ_PID_FILE="${T}/rabbitmq.pid"
+   local -x RABBITMQ_ENABLED_PLUGINS_FILE="${T}/rabbitmq/enabled_plugins"
+   /usr/libexec/rabbitmq/rabbitmq-server -p 5672:5672 &
+
+   einfo "Waiting for rabbitmq to fully load"
+   while ! { echo >/dev/tcp/localhost/5672 ; } &> /dev/null; do
+   sleep 1
+   done
+   einfo "rabbitmq is ready"
+
+   perl-module_src_test
+
+   einfo "Stopping rabbitmq"
+   kill "$(<"${RABBITMQ_PID_FILE}")" || die
+}

[gentoo-commits] repo/gentoo:master commit in: dev-libs/mmtf-cpp/

2022-10-25 Thread Alexey Shvetsov

commit: 53300d5df05a7e4ef3f80ad7144747e723b84c77
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Tue Oct 25 22:19:14 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Tue Oct 25 22:19:14 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=53300d5d

dev-libs/mmtf-cpp: add 1.1.0

Signed-off-by: Alexey Shvetsov  gentoo.org>

 dev-libs/mmtf-cpp/Manifest  |  1 +
 dev-libs/mmtf-cpp/mmtf-cpp-1.1.0.ebuild | 19 +++
 2 files changed, 20 insertions(+)

diff --git a/dev-libs/mmtf-cpp/Manifest b/dev-libs/mmtf-cpp/Manifest
index db5da6c78af2..4e1801551969 100644
--- a/dev-libs/mmtf-cpp/Manifest
+++ b/dev-libs/mmtf-cpp/Manifest
@@ -1 +1,2 @@
 DIST mmtf-cpp-1.0.0.tar.gz 59363 BLAKE2B 
afcb03ce1f83e10348b148bd6218e5e10ab3e425b0f8105d292f9e265800ea6ca4562dc11fa4453df05d8a698576fba9dfe982aa91a8dcc1983480c0c52dbcf7
 SHA512 
0e502ae76e31689d440bff2fbc90fdab7ff62d5369e26f7ab2836966a30bda72625d6d5da33bc0770cf471a1549a02f7478ea16a01dd6be2809568d8daecb073
+DIST mmtf-cpp-1.1.0.tar.gz 106527 BLAKE2B 
46f7b44ca6d9096b1f6c7911121d54ab50889c884156724229912bb125492682435d05d93b55b0c8c8025f293eb23f537da4f01a42fe65f4f89270e49429fce7
 SHA512 
91f30ac1031d71a5358fd83bf864afdac1d1ea758d775811b94a2609be286fcbb7dcfece097c6959afb4f8f9d237b7372183424d4ef211364cc69c08f2cd6e52

diff --git a/dev-libs/mmtf-cpp/mmtf-cpp-1.1.0.ebuild 
b/dev-libs/mmtf-cpp/mmtf-cpp-1.1.0.ebuild
new file mode 100644
index ..c31d0595eb2f
--- /dev/null
+++ b/dev-libs/mmtf-cpp/mmtf-cpp-1.1.0.ebuild
@@ -0,0 +1,19 @@
+# Copyright 2019-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+inherit cmake
+
+DESCRIPTION="The pure C++ implementation of the MMTF API, decoder and encoder"
+HOMEPAGE="https://github.com/rcsb/mmtf-cpp;
+SRC_URI="https://github.com/rcsb/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos"
+IUSE=""
+
+DEPEND="dev-libs/msgpack"
+RDEPEND="${DEPEND}"
+BDEPEND=""

[gentoo-commits] repo/gentoo:master commit in: dev-cpp/argparse/

2022-10-25 Thread Alexey Shvetsov

commit: b8a373cc0afe6fda5331e3c20118bd89c3e899e7
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Tue Oct 25 22:17:27 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Tue Oct 25 22:17:27 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b8a373cc

dev-cpp/argparse: add 2.9

Signed-off-by: Alexey Shvetsov  gentoo.org>

 dev-cpp/argparse/Manifest|  1 +
 dev-cpp/argparse/argparse-2.9.ebuild | 29 +
 2 files changed, 30 insertions(+)

diff --git a/dev-cpp/argparse/Manifest b/dev-cpp/argparse/Manifest
index ba65ae60a21d..c043894820ca 100644
--- a/dev-cpp/argparse/Manifest
+++ b/dev-cpp/argparse/Manifest
@@ -1,2 +1,3 @@
 DIST argparse-2.1.tar.gz 72452 BLAKE2B 
eece3f1cf6a2e58f5bec99f0223b31ba92147964053d98122099dd806a0ab62c6039ee8741281d1eca28b9d0e3aa02d7d076e8bcc64bbd5dd03c777f8e460531
 SHA512 
35746e0b526bd4406c954ab315f191abc57b08b48a047f108ddacc7baace406d3b1af23d41caff565afecfeb41dfedd27a08cdba8d11b59dbe7c78b7e9b0
 DIST argparse-2.6.tar.gz 93865 BLAKE2B 
5ab49a1e9d85e1252b4066fb3278b6c34c0e813f6b49063196cb294544a3adaf45930295834786d41ebbe483b4704be45e90e3a1d53e5085529e78e0b07fad0d
 SHA512 
778e405b7790906794506a2175279465c7d7efa905d0848807fcbddf5ff827e9556a3f2660ee0207a70195a8e9e652ba37ba4df2a038d8646339525cec0f1784
+DIST argparse-2.9.tar.gz 103147 BLAKE2B 
2862acd7dc43dea0f7a7a1e6c9541ec8e7b7ecc70ce72ad327b34f72a330799475490e7da4e3a07c9ab28ddec4f88911514690c8b438f36d7c02704fe26b0f08
 SHA512 
fa471e7d8c448510376e79927496f62775e6ed37e1dffefd607839e6005dfbc61125d0e18bfc1ff20f86cef7efd75339d7bb143dc6574d988f83c7c96896fa5f

diff --git a/dev-cpp/argparse/argparse-2.9.ebuild 
b/dev-cpp/argparse/argparse-2.9.ebuild
new file mode 100644
index ..e273fd49b506
--- /dev/null
+++ b/dev-cpp/argparse/argparse-2.9.ebuild
@@ -0,0 +1,29 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+inherit cmake
+
+DESCRIPTION="Argument Parser for Modern C++"
+HOMEPAGE="https://github.com/p-ranav/argparse;
+SRC_URI="https://github.com/p-ranav/argparse/archive/v${PV}.tar.gz -> 
${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~arm ~arm64 ~x86"
+IUSE="test"
+RESTRICT="!test? ( test )"
+
+src_configure() {
+   local mycmakeargs=(
+   -DARGPARSE_BUILD_TESTS=$(usex test)
+   )
+
+   cmake_src_configure
+}
+
+src_test() {
+   cd "${BUILD_DIR}"/test || die
+   ./tests || die
+}

[gentoo-commits] repo/gentoo:master commit in: dev-cpp/argparse/

2022-10-25 Thread Alexey Shvetsov

commit: d6cedadd8ac52efd740ace2bde458a497e47f725
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Tue Oct 25 22:17:42 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Tue Oct 25 22:17:42 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d6cedadd

dev-cpp/argparse: drop 2.1-r1, 2.6

Signed-off-by: Alexey Shvetsov  gentoo.org>

 dev-cpp/argparse/Manifest   |  2 --
 dev-cpp/argparse/argparse-2.1-r1.ebuild | 14 --
 dev-cpp/argparse/argparse-2.6.ebuild| 29 -
 3 files changed, 45 deletions(-)

diff --git a/dev-cpp/argparse/Manifest b/dev-cpp/argparse/Manifest
index c043894820ca..02766a54f2de 100644
--- a/dev-cpp/argparse/Manifest
+++ b/dev-cpp/argparse/Manifest
@@ -1,3 +1 @@
-DIST argparse-2.1.tar.gz 72452 BLAKE2B 
eece3f1cf6a2e58f5bec99f0223b31ba92147964053d98122099dd806a0ab62c6039ee8741281d1eca28b9d0e3aa02d7d076e8bcc64bbd5dd03c777f8e460531
 SHA512 
35746e0b526bd4406c954ab315f191abc57b08b48a047f108ddacc7baace406d3b1af23d41caff565afecfeb41dfedd27a08cdba8d11b59dbe7c78b7e9b0
-DIST argparse-2.6.tar.gz 93865 BLAKE2B 
5ab49a1e9d85e1252b4066fb3278b6c34c0e813f6b49063196cb294544a3adaf45930295834786d41ebbe483b4704be45e90e3a1d53e5085529e78e0b07fad0d
 SHA512 
778e405b7790906794506a2175279465c7d7efa905d0848807fcbddf5ff827e9556a3f2660ee0207a70195a8e9e652ba37ba4df2a038d8646339525cec0f1784
 DIST argparse-2.9.tar.gz 103147 BLAKE2B 
2862acd7dc43dea0f7a7a1e6c9541ec8e7b7ecc70ce72ad327b34f72a330799475490e7da4e3a07c9ab28ddec4f88911514690c8b438f36d7c02704fe26b0f08
 SHA512 
fa471e7d8c448510376e79927496f62775e6ed37e1dffefd607839e6005dfbc61125d0e18bfc1ff20f86cef7efd75339d7bb143dc6574d988f83c7c96896fa5f

diff --git a/dev-cpp/argparse/argparse-2.1-r1.ebuild 
b/dev-cpp/argparse/argparse-2.1-r1.ebuild
deleted file mode 100644
index 67e32ea4d3d2..
--- a/dev-cpp/argparse/argparse-2.1-r1.ebuild
+++ /dev/null
@@ -1,14 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-inherit cmake
-
-DESCRIPTION="Argument Parser for Modern C++"
-HOMEPAGE="https://github.com/p-ranav/argparse;
-SRC_URI="https://github.com/p-ranav/argparse/archive/v${PV}.tar.gz -> 
${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~arm ~arm64 ~x86"

diff --git a/dev-cpp/argparse/argparse-2.6.ebuild 
b/dev-cpp/argparse/argparse-2.6.ebuild
deleted file mode 100644
index e273fd49b506..
--- a/dev-cpp/argparse/argparse-2.6.ebuild
+++ /dev/null
@@ -1,29 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-inherit cmake
-
-DESCRIPTION="Argument Parser for Modern C++"
-HOMEPAGE="https://github.com/p-ranav/argparse;
-SRC_URI="https://github.com/p-ranav/argparse/archive/v${PV}.tar.gz -> 
${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~arm ~arm64 ~x86"
-IUSE="test"
-RESTRICT="!test? ( test )"
-
-src_configure() {
-   local mycmakeargs=(
-   -DARGPARSE_BUILD_TESTS=$(usex test)
-   )
-
-   cmake_src_configure
-}
-
-src_test() {
-   cd "${BUILD_DIR}"/test || die
-   ./tests || die
-}

[gentoo-commits] repo/gentoo:master commit in: dev-cpp/amqp-cpp/

2022-10-25 Thread Alexey Shvetsov

commit: 2494b9647f5defd40d34722dbe316a00a394f73c
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Tue Oct 25 22:15:02 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Tue Oct 25 22:15:02 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=2494b964

dev-cpp/amqp-cpp: add 4.3.18

Signed-off-by: Alexey Shvetsov  gentoo.org>

 dev-cpp/amqp-cpp/Manifest   |  1 +
 dev-cpp/amqp-cpp/amqp-cpp-4.3.18.ebuild | 36 +
 2 files changed, 37 insertions(+)

diff --git a/dev-cpp/amqp-cpp/Manifest b/dev-cpp/amqp-cpp/Manifest
index 33d46fd79d06..728c975bbb29 100644
--- a/dev-cpp/amqp-cpp/Manifest
+++ b/dev-cpp/amqp-cpp/Manifest
@@ -1,2 +1,3 @@
 DIST AMQP-CPP-4.3.16.tar.gz 158954 BLAKE2B 
175c5c22a88e20ca5d123fbf808a354a0b3048a0127ba75170b61e8c8822ba8d8b78cb4247cb26cfeebff92c0ca74213d6fb254afbc74e9f92a88751137e8c97
 SHA512 
bdce6a93f3b88a0ab26dae66e289f98194d0f1a3e2eb03e0c858111275a02ebec042dfe9d757989a1c0cbe1b15652346f86008bf4248e366d1896c4750d9194f
 DIST AMQP-CPP-4.3.17.tar.gz 160729 BLAKE2B 
963b32e4736627da3eece481168565136ad6fd387e71a04de9d08664b6877a38e084e27f482c2c24886bff5c78dcdf266fab88189dc2eef85f3b50d15d020565
 SHA512 
763e9a3d6565584753a5bcd8f4e8b174327f206e01f001ae8b4b7d1728ccebf195cd2d4463a8b65badc1a91010978360f6f5c25fd3acf70116b5ff7eba2db7f6
+DIST AMQP-CPP-4.3.18.tar.gz 160732 BLAKE2B 
3c3d2c21dcd461cf92b67d7e8cfac5a2052a81aade2fd00eca75d4991f9cfc6cfa397924361a7a8a28accb98153c2a50bda259726e81513a1d910390f3d5
 SHA512 
950d84a769ccbbf146be617297e81d8f036096bcbe5ca520d4b909549bf8d74fc576eec90a1fafb164b86c9eb693c3ae29d884c3a30749f04440646549ffe5ce

diff --git a/dev-cpp/amqp-cpp/amqp-cpp-4.3.18.ebuild 
b/dev-cpp/amqp-cpp/amqp-cpp-4.3.18.ebuild
new file mode 100644
index ..33a052a82f5f
--- /dev/null
+++ b/dev-cpp/amqp-cpp/amqp-cpp-4.3.18.ebuild
@@ -0,0 +1,36 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+inherit cmake
+
+MY_PN=${PN^^}
+MY_P=${MY_PN}-${PV}
+
+DESCRIPTION="AMQP-CPP is a C++ library for communicating with a RabbitMQ 
message broker"
+HOMEPAGE="https://github.com/CopernicaMarketingSoftware/AMQP-CPP;
+SRC_URI="https://github.com/CopernicaMarketingSoftware/${MY_PN}/archive/v${PV}.tar.gz
 -> ${MY_P}.tar.gz"
+S="${WORKDIR}/${MY_P}"
+
+LICENSE="Apache-2.0"
+SLOT="0"
+KEYWORDS="~amd64 ~arm ~arm64 ~x86"
+
+src_prepare() {
+   sed \
+   -e "s:DESTINATION lib:DESTINATION $(get_libdir):g" \
+   -e "s:DESTINATION cmake:DESTINATION 
$(get_libdir)/cmake/${PN/-/}:g" \
+   -i CMakeLists.txt || die
+
+   cmake_src_prepare
+}
+
+src_configure() {
+   local mycmakeargs=(
+   -DAMQP-CPP_BUILD_SHARED=ON
+   -DAMQP-CPP_LINUX_TCP=ON
+   )
+
+   cmake_src_configure
+}

[gentoo-commits] repo/gentoo:master commit in: dev-cpp/amqp-cpp/

2022-10-25 Thread Alexey Shvetsov

commit: c5297d4c579f20e2ba646edb80dde3574e65bc94
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Tue Oct 25 22:15:25 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Tue Oct 25 22:15:25 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c5297d4c

dev-cpp/amqp-cpp: drop 4.3.16, 4.3.17

Signed-off-by: Alexey Shvetsov  gentoo.org>

 dev-cpp/amqp-cpp/Manifest   |  2 --
 dev-cpp/amqp-cpp/amqp-cpp-4.3.16.ebuild | 36 -
 dev-cpp/amqp-cpp/amqp-cpp-4.3.17.ebuild | 36 -
 3 files changed, 74 deletions(-)

diff --git a/dev-cpp/amqp-cpp/Manifest b/dev-cpp/amqp-cpp/Manifest
index 728c975bbb29..fe6a3666924e 100644
--- a/dev-cpp/amqp-cpp/Manifest
+++ b/dev-cpp/amqp-cpp/Manifest
@@ -1,3 +1 @@
-DIST AMQP-CPP-4.3.16.tar.gz 158954 BLAKE2B 
175c5c22a88e20ca5d123fbf808a354a0b3048a0127ba75170b61e8c8822ba8d8b78cb4247cb26cfeebff92c0ca74213d6fb254afbc74e9f92a88751137e8c97
 SHA512 
bdce6a93f3b88a0ab26dae66e289f98194d0f1a3e2eb03e0c858111275a02ebec042dfe9d757989a1c0cbe1b15652346f86008bf4248e366d1896c4750d9194f
-DIST AMQP-CPP-4.3.17.tar.gz 160729 BLAKE2B 
963b32e4736627da3eece481168565136ad6fd387e71a04de9d08664b6877a38e084e27f482c2c24886bff5c78dcdf266fab88189dc2eef85f3b50d15d020565
 SHA512 
763e9a3d6565584753a5bcd8f4e8b174327f206e01f001ae8b4b7d1728ccebf195cd2d4463a8b65badc1a91010978360f6f5c25fd3acf70116b5ff7eba2db7f6
 DIST AMQP-CPP-4.3.18.tar.gz 160732 BLAKE2B 
3c3d2c21dcd461cf92b67d7e8cfac5a2052a81aade2fd00eca75d4991f9cfc6cfa397924361a7a8a28accb98153c2a50bda259726e81513a1d910390f3d5
 SHA512 
950d84a769ccbbf146be617297e81d8f036096bcbe5ca520d4b909549bf8d74fc576eec90a1fafb164b86c9eb693c3ae29d884c3a30749f04440646549ffe5ce

diff --git a/dev-cpp/amqp-cpp/amqp-cpp-4.3.16.ebuild 
b/dev-cpp/amqp-cpp/amqp-cpp-4.3.16.ebuild
deleted file mode 100644
index 33a052a82f5f..
--- a/dev-cpp/amqp-cpp/amqp-cpp-4.3.16.ebuild
+++ /dev/null
@@ -1,36 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-inherit cmake
-
-MY_PN=${PN^^}
-MY_P=${MY_PN}-${PV}
-
-DESCRIPTION="AMQP-CPP is a C++ library for communicating with a RabbitMQ 
message broker"
-HOMEPAGE="https://github.com/CopernicaMarketingSoftware/AMQP-CPP;
-SRC_URI="https://github.com/CopernicaMarketingSoftware/${MY_PN}/archive/v${PV}.tar.gz
 -> ${MY_P}.tar.gz"
-S="${WORKDIR}/${MY_P}"
-
-LICENSE="Apache-2.0"
-SLOT="0"
-KEYWORDS="~amd64 ~arm ~arm64 ~x86"
-
-src_prepare() {
-   sed \
-   -e "s:DESTINATION lib:DESTINATION $(get_libdir):g" \
-   -e "s:DESTINATION cmake:DESTINATION 
$(get_libdir)/cmake/${PN/-/}:g" \
-   -i CMakeLists.txt || die
-
-   cmake_src_prepare
-}
-
-src_configure() {
-   local mycmakeargs=(
-   -DAMQP-CPP_BUILD_SHARED=ON
-   -DAMQP-CPP_LINUX_TCP=ON
-   )
-
-   cmake_src_configure
-}

diff --git a/dev-cpp/amqp-cpp/amqp-cpp-4.3.17.ebuild 
b/dev-cpp/amqp-cpp/amqp-cpp-4.3.17.ebuild
deleted file mode 100644
index 33a052a82f5f..
--- a/dev-cpp/amqp-cpp/amqp-cpp-4.3.17.ebuild
+++ /dev/null
@@ -1,36 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-inherit cmake
-
-MY_PN=${PN^^}
-MY_P=${MY_PN}-${PV}
-
-DESCRIPTION="AMQP-CPP is a C++ library for communicating with a RabbitMQ 
message broker"
-HOMEPAGE="https://github.com/CopernicaMarketingSoftware/AMQP-CPP;
-SRC_URI="https://github.com/CopernicaMarketingSoftware/${MY_PN}/archive/v${PV}.tar.gz
 -> ${MY_P}.tar.gz"
-S="${WORKDIR}/${MY_P}"
-
-LICENSE="Apache-2.0"
-SLOT="0"
-KEYWORDS="~amd64 ~arm ~arm64 ~x86"
-
-src_prepare() {
-   sed \
-   -e "s:DESTINATION lib:DESTINATION $(get_libdir):g" \
-   -e "s:DESTINATION cmake:DESTINATION 
$(get_libdir)/cmake/${PN/-/}:g" \
-   -i CMakeLists.txt || die
-
-   cmake_src_prepare
-}
-
-src_configure() {
-   local mycmakeargs=(
-   -DAMQP-CPP_BUILD_SHARED=ON
-   -DAMQP-CPP_LINUX_TCP=ON
-   )
-
-   cmake_src_configure
-}

[gentoo-commits] repo/gentoo:master commit in: profiles/arch/riscv/, profiles/arch/x86/, profiles/arch/arm64/

2022-09-15 Thread Alexey Shvetsov

commit: 9c734b9dbcad3b07bd18968c8833419240d754a8
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Thu Sep 15 10:45:33 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Sep 15 10:45:33 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=9c734b9d

profiles/arch: mask nvml use flag for slurm on arm64 riscv x86

Signed-off-by: Alexey Shvetsov  gentoo.org>

 profiles/arch/arm64/package.use.mask | 4 
 profiles/arch/riscv/package.use.mask | 4 
 profiles/arch/x86/package.use.mask   | 4 
 3 files changed, 12 insertions(+)

diff --git a/profiles/arch/arm64/package.use.mask 
b/profiles/arch/arm64/package.use.mask
index c4b8e0b8d348..003ac09dd1dd 100644
--- a/profiles/arch/arm64/package.use.mask
+++ b/profiles/arch/arm64/package.use.mask
@@ -1,6 +1,10 @@
 # Copyright 1999-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
+# Alexey Shvetsov  (2022-09-15)
+# Mask nvml use flag for slurm
+sys-cluster/slurm nvml
+
 # Sam James  (2022-07-08)
 # Unmask galera for dev-db/mariadb
 >=dev-db/mariadb-10.1.0 -galera

diff --git a/profiles/arch/riscv/package.use.mask 
b/profiles/arch/riscv/package.use.mask
index ca7f11109878..14469c1b1754 100644
--- a/profiles/arch/riscv/package.use.mask
+++ b/profiles/arch/riscv/package.use.mask
@@ -1,6 +1,10 @@
 # Copyright 2019-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
+# Alexey Shvetsov  (2022-09-15)
+# Mask nvml use flag for slurm
+sys-cluster/slurm nvml
+
 # Jakov Smolić  (2022-09-07)
 # Unkeyworded dependencies (xen-tools, aws stack), masking to reduce
 # the dependency graph

diff --git a/profiles/arch/x86/package.use.mask 
b/profiles/arch/x86/package.use.mask
index cf063345434c..9799b25a0add 100644
--- a/profiles/arch/x86/package.use.mask
+++ b/profiles/arch/x86/package.use.mask
@@ -1,6 +1,10 @@
 # Copyright 1999-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
+# Alexey Shvetsov  (2022-09-15)
+# Mask nvml use flag for slurm
+sys-cluster/slurm nvml
+
 # Alfredo Tupone  (2022-08-30)
 # ada bootstrap currently only available on amd64/x86
 sys-devel/gcc -ada

[gentoo-commits] repo/gentoo:master commit in: net-vpn/networkmanager-l2tp/

2022-09-15 Thread Alexey Shvetsov

commit: b8ce8a793839b5a2c13c785da5c6d727625db3e0
Author: Dmitrii Tochanskii  tochlab  net>
AuthorDate: Wed Jun  1 09:49:47 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Sep 15 10:30:48 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b8ce8a79

net-vpn/networkmanager-l2tp: Fix QA 0303

Closes: https://bugs.gentoo.org/846407
Closes: https://github.com/gentoo/gentoo/pull/25721
Signed-off-by: Dmitrii Tochanskii  tochlab.net>
Signed-off-by: Alexey Shvetsov  gentoo.org>

 net-vpn/networkmanager-l2tp/networkmanager-l2tp-1.20.4-r1.ebuild | 5 +
 1 file changed, 5 insertions(+)

diff --git a/net-vpn/networkmanager-l2tp/networkmanager-l2tp-1.20.4-r1.ebuild 
b/net-vpn/networkmanager-l2tp/networkmanager-l2tp-1.20.4-r1.ebuild
index 22a3e4e1db75..a401fcd1d01e 100644
--- a/net-vpn/networkmanager-l2tp/networkmanager-l2tp-1.20.4-r1.ebuild
+++ b/net-vpn/networkmanager-l2tp/networkmanager-l2tp-1.20.4-r1.ebuild
@@ -60,3 +60,8 @@ src_configure() {
 
econf "${myeconfargs[@]}"
 }
+
+src_install() {
+   default
+   find "${ED}" -name '*.la' -delete || die
+}

[gentoo-commits] repo/gentoo:master commit in: net-vpn/networkmanager-l2tp/

2022-09-15 Thread Alexey Shvetsov

commit: 922945c527bf1974135f036f6ada5ef77da854ea
Author: Dmitrii Tochanskii  tochlab  net>
AuthorDate: Wed Jun  1 09:43:29 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Sep 15 10:30:48 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=922945c5

net-vpn/networkmanager-l2tp: Rename use flag gnome to gtk

Bug: https://bugs.gentoo.org/732704
Signed-off-by: Dmitrii Tochanskii  tochlab.net>
Signed-off-by: Alexey Shvetsov  gentoo.org>

 net-vpn/networkmanager-l2tp/networkmanager-l2tp-1.20.4-r1.ebuild | 8 
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/net-vpn/networkmanager-l2tp/networkmanager-l2tp-1.20.4-r1.ebuild 
b/net-vpn/networkmanager-l2tp/networkmanager-l2tp-1.20.4-r1.ebuild
index 833b02cd5708..22a3e4e1db75 100644
--- a/net-vpn/networkmanager-l2tp/networkmanager-l2tp-1.20.4-r1.ebuild
+++ b/net-vpn/networkmanager-l2tp/networkmanager-l2tp-1.20.4-r1.ebuild
@@ -15,10 +15,10 @@ 
SRC_URI="https://github.com/nm-l2tp/${MY_PN}/releases/download/${PV}/${MY_P}.tar
 LICENSE="GPL-2"
 SLOT="0"
 KEYWORDS="~amd64 ~x86"
-IUSE="gnome static-libs"
+IUSE="gtk static-libs"
 
 RDEPEND="
-   >=net-misc/networkmanager-1.20[ppp]
+   >=net-misc/networkmanager-1.2[ppp]
dev-libs/dbus-glib
net-dialup/ppp:=[eap-tls]
net-dialup/xl2tpd
@@ -27,7 +27,7 @@ RDEPEND="
net-vpn/strongswan
net-vpn/libreswan
)
-   gnome? (
+   gtk? (
x11-libs/gtk+:3
app-crypt/libsecret
gnome-extra/nm-applet
@@ -54,7 +54,7 @@ src_configure() {
local myeconfargs=(
--localstatedir=/var
--with-pppd-plugin-dir=/usr/$(get_libdir)/pppd/${PPPD_VER}
-   $(use_with gnome)
+   $(use_with gtk gnome)
$(use_enable static-libs static)
)

[gentoo-commits] repo/gentoo:master commit in: dev-util/uncrustify/

2022-09-15 Thread Alexey Shvetsov

commit: 90209b21cf291230123bdfcd6ee1559a03f6c975
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Thu Sep 15 10:23:48 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Sep 15 10:23:48 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=90209b21

dev-util/uncrustify: add new version

Signed-off-by: Alexey Shvetsov  gentoo.org>

 dev-util/uncrustify/Manifest   |  3 +--
 dev-util/uncrustify/uncrustify-0.74.0.ebuild   | 31 --
 ...tify-0.72.0.ebuild => uncrustify-0.75.1.ebuild} |  2 +-
 3 files changed, 2 insertions(+), 34 deletions(-)

diff --git a/dev-util/uncrustify/Manifest b/dev-util/uncrustify/Manifest
index c4a0b51af119..98edbbf2fe54 100644
--- a/dev-util/uncrustify/Manifest
+++ b/dev-util/uncrustify/Manifest
@@ -1,3 +1,2 @@
 DIST uncrustify-0.71.0.tar.gz 1704631 BLAKE2B 
3dc9122647e2c173a776c4ad24c93d7b88fdd00c6c4f3070e68fd7a272218335063d8563446a3c8e72ff68e41d00a265aca76682a8cea201a33230377d7e425a
 SHA512 
220ecbebb1c1d6abadb96c339e4ca9b264a04fa08bc83e9b0fabba5fae425efd1911d175d18b635521614ec9c33aa389fadaeec62ebf28a5d71e595900a92181
-DIST uncrustify-0.72.0.tar.gz 1530850 BLAKE2B 
59b3ff4b47fee1f2a303e237d46b5fb656041e4d397aa97862cc7aebb6a5e705d036889a7b492bbe4393537ff52cf78af46bbe513e71aef19fca1388e3ffa79b
 SHA512 
bfcbdf0d8198e1dd91f1c8283441a56669610a84d55a17cdd504571da09b26fef026fd3f753acd9950e498f574e6771a206c72b76ffdea97747b7a4fdb481862
-DIST uncrustify-0.74.0.tar.gz 1565507 BLAKE2B 
b3e8289b68d859e9e52c16c4fc2c2cb2708314af20b2e8396ae5311374aace98a1d3ebba3173a0b0260c24f5a847d3a91aec03c9f65a69b1c5584c86950663d6
 SHA512 
97348bf151464e12e292a38dfdbb98d62c15bdd7dd990da7c8854969ceb53d6f70a0873a6e09b9978291010615dda29c3486a4e8a77dc1bfb881c34df01143c5
+DIST uncrustify-0.75.1.tar.gz 1603502 BLAKE2B 
096a933757b2894f61cf0630f1329f7c118e28469f8bf14b4bc696ffeed031792829a0bb6432c528610e0d58ea3a0a3c007b2d9821f855d646b330fad6e25f2a
 SHA512 
105e723a3421153919f7280288559cdf6a0ff80bf37575348195f8f83f3f3863b0084911ec8b07b0a88147bd8321698e1108c91fa3892fdaed59048d4057e3de

diff --git a/dev-util/uncrustify/uncrustify-0.74.0.ebuild 
b/dev-util/uncrustify/uncrustify-0.74.0.ebuild
deleted file mode 100644
index e4c34c2bcb23..
--- a/dev-util/uncrustify/uncrustify-0.74.0.ebuild
+++ /dev/null
@@ -1,31 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-if [[ ${PV} == ** ]]; then
-   EGIT_REPO_URI="https://github.com/${PN}/${PN}.git;
-   scm_eclass=git-r3
-else
-   KEYWORDS="~amd64 ~x86 ~amd64-linux ~ppc-macos ~x64-macos ~x64-solaris 
~x86-solaris"
-   SRC_URI="https://github.com/${PN}/${PN}/archive/${P}.tar.gz;
-   S=${WORKDIR}/${PN}-${P}
-fi
-
-PYTHON_COMPAT=( python3_{8..10} )
-
-inherit cmake python-any-r1 ${scm_eclass}
-
-DESCRIPTION="C/C++/C#/D/Java/Pawn code indenter and beautifier"
-HOMEPAGE="http://uncrustify.sourceforge.net/;
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE="test"
-RESTRICT="!test? ( test )"
-
-BDEPEND="test? ( ${PYTHON_DEPS} )"
-
-pkg_setup() {
-   use test && python-any-r1_pkg_setup
-}

diff --git a/dev-util/uncrustify/uncrustify-0.72.0.ebuild 
b/dev-util/uncrustify/uncrustify-0.75.1.ebuild
similarity index 94%
rename from dev-util/uncrustify/uncrustify-0.72.0.ebuild
rename to dev-util/uncrustify/uncrustify-0.75.1.ebuild
index e4c34c2bcb23..7d5daa8187dd 100644
--- a/dev-util/uncrustify/uncrustify-0.72.0.ebuild
+++ b/dev-util/uncrustify/uncrustify-0.75.1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7

[gentoo-commits] repo/gentoo:master commit in: dev-cpp/amqp-cpp/

2022-09-15 Thread Alexey Shvetsov

commit: c0cbeb2177e018f5cb26e45fd4cb1a624e0f7900
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Thu Sep 15 10:16:31 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Sep 15 10:16:31 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c0cbeb21

dev-cpp/amqp-cpp: add 4.3.17, drop 4.3.10-r1

Signed-off-by: Alexey Shvetsov  gentoo.org>

 dev-cpp/amqp-cpp/Manifest  | 2 +-
 dev-cpp/amqp-cpp/{amqp-cpp-4.3.10-r1.ebuild => amqp-cpp-4.3.17.ebuild} | 0
 2 files changed, 1 insertion(+), 1 deletion(-)

diff --git a/dev-cpp/amqp-cpp/Manifest b/dev-cpp/amqp-cpp/Manifest
index 3d50a2b70732..33d46fd79d06 100644
--- a/dev-cpp/amqp-cpp/Manifest
+++ b/dev-cpp/amqp-cpp/Manifest
@@ -1,2 +1,2 @@
-DIST AMQP-CPP-4.3.10.tar.gz 156600 BLAKE2B 
0453259e8d84b223fc8d36d4747b267a84d7db9daef55d13ff31d4c8cf1e5dd8efb87d9f83f7ff7554aa70c5000d6da45187ce03db09ff4c542bd5409d81ada8
 SHA512 
ef9a20cd066bbefc243d8d58dbded728e0c88f5c47134f835c50dfa01178b53200970333f0d56330c206f74aa7d7691556c3e4693d5276adb7e3bf4e66bcd057
 DIST AMQP-CPP-4.3.16.tar.gz 158954 BLAKE2B 
175c5c22a88e20ca5d123fbf808a354a0b3048a0127ba75170b61e8c8822ba8d8b78cb4247cb26cfeebff92c0ca74213d6fb254afbc74e9f92a88751137e8c97
 SHA512 
bdce6a93f3b88a0ab26dae66e289f98194d0f1a3e2eb03e0c858111275a02ebec042dfe9d757989a1c0cbe1b15652346f86008bf4248e366d1896c4750d9194f
+DIST AMQP-CPP-4.3.17.tar.gz 160729 BLAKE2B 
963b32e4736627da3eece481168565136ad6fd387e71a04de9d08664b6877a38e084e27f482c2c24886bff5c78dcdf266fab88189dc2eef85f3b50d15d020565
 SHA512 
763e9a3d6565584753a5bcd8f4e8b174327f206e01f001ae8b4b7d1728ccebf195cd2d4463a8b65badc1a91010978360f6f5c25fd3acf70116b5ff7eba2db7f6

diff --git a/dev-cpp/amqp-cpp/amqp-cpp-4.3.10-r1.ebuild 
b/dev-cpp/amqp-cpp/amqp-cpp-4.3.17.ebuild
similarity index 100%
rename from dev-cpp/amqp-cpp/amqp-cpp-4.3.10-r1.ebuild
rename to dev-cpp/amqp-cpp/amqp-cpp-4.3.17.ebuild

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2022-09-15 Thread Alexey Shvetsov

commit: 5e77ea315f91898e406f29a453e5e6fee246a375
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Thu Sep 15 10:05:08 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Sep 15 10:08:38 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=5e77ea31

sci-chemistry/gromacs: add 2022.3, drop 2022.1

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/Manifest  | 6 +++---
 .../gromacs/{gromacs-2022.1.ebuild => gromacs-2022.3.ebuild}| 2 +-
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest
index 9b35e520e111..6b31f7f7e8cb 100644
--- a/sci-chemistry/gromacs/Manifest
+++ b/sci-chemistry/gromacs/Manifest
@@ -4,21 +4,21 @@ DIST gromacs-2020.4.tar.gz 29149899 BLAKE2B 
a07c8efd96137d58c1edf4ac9b5aafeb16d9
 DIST gromacs-2020.7.tar.gz 29175554 BLAKE2B 
98f1aa415946f8eb113febc81105f0c1b0919b96fc3c55a0ab83bf3950ff509b81eade92e645adb0bc2b407df239e20cf3f19828b6e08616437c8693c1fddcc8
 SHA512 
1d375c44cec38445e56cea252623b5b6c565680268999d4b6c14d6dc38759a27227655b2d29efaab9f9115d3677b446cb555e11cddafa0dc10c4827caaa2477b
 DIST gromacs-2021.3.tar.gz 37987972 BLAKE2B 
d71995c7d5a34978246e33dc637ac3d273e547afcf72d1a107026650f03286ecdf27e4b9a70113b3c3a01af59ad49ac5c813aa6e5d2e8eb29fd05582a7a28d34
 SHA512 
da420917d06de2e192dfbb4e1b9f46989ed05b5c7e641c657104ed8f2bd8b22509bffd1ecfd7c965c80544eafa6af12d6d0aba7e1e7d9d14a4a88fb3fbf394a5
 DIST gromacs-2021.5.tar.gz 38023772 BLAKE2B 
45e1f080b86626423e471f06b48b615db1913048f9f6998da8ce45408339b32f829d33dd2af57297a7d307fcffd556c333a58c309ee0f2adb021ca3755619b05
 SHA512 
56c1b312fc8e52ec6f86e445d2fa2d07107c461b35d4dc8cdf95580f05fd8e6c5fd671d0e72b2b9e74e3232bc8c41db496fe4bcaf2b9a3ae3c2cfa93489a31c5
-DIST gromacs-2022.1.tar.gz 40375423 BLAKE2B 
fe28ec4c080500d0248bd3d37ec742e8cf51ba3520b5a7c3f640413b232fcf96354940c743e2a54a9fde04c98ecb2fd317863d8c06b008f516fefc0e9e1197dd
 SHA512 
80c98badb7ebad171925486d1676b64e787cf8cbfb8f1b1cf1ccab8cbf8d8340f7fdd084dfb7388afc7a3aef23b95d603265305faf82125324307d86460c6f17
 DIST gromacs-2022.2.tar.gz 40350604 BLAKE2B 
789c8abc13b5c64af6b9d66efcf70449330b7e6a4bc127ba299e36eea925e9485809c11480ffd857805d9b453df363ce9bb05bc54b439801334767651defc0ef
 SHA512 
9f33518d2035afb37fc40377e575d497ff32bef2adb702669b35b1b51b1694b1113c5634fa6febd41955b6dfbfd055e7d523e1919bda1bf169a6d0c25700cef7
+DIST gromacs-2022.3.tar.gz 40359623 BLAKE2B 
23beacf7208df89aea6c3effe483361451a9ff20428fe79ec163a5eee4dc0db0bb00a2bee84bc9377ad272f216fd372eab1b77e8542ce231ac785b41b582fa15
 SHA512 
1a6a1674ed17dfd93dcd51537cd13c9df5bb9bd91c3a26601032f83b788a93689bac8070eb8e495a786d41cc9d474885538cbaffa4229da70dfa640ee42b7c60
 DIST manual-2018.8.pdf 10025023 BLAKE2B 
afb0a6e6a72d78df743fcb57e7c1716848589e571dd35167b957a9b407ca27978ccfb6cb9e0df9c9439b888f352501a00ba32281ed1e0b4193bd606f1d77152e
 SHA512 
b1972f7ce965bfc9377542993c5943ea4868a8ed23a969d4203264746d6bea3a7a65c6379196ece37fd6d68ec7ec80f827bde87d1049284af7082759a124f1d5
 DIST manual-2019.6.pdf 12702376 BLAKE2B 
c350127bc06a9eb3dee73da39037c84daeb89500e23cb131bd19a150bf60602d4dde7611e0c6f0f344af4093e96a899303dac71b4df56fd0c44c3a48a56606b7
 SHA512 
dfdff67c2c1c9ce1f1c236b7686c5331b0fe86951da6c98eddd6a3e748815e0be0a9653ae4318469fcdd913c4e7c355d64a997cc80b9d9fbe6282ef6d98e61eb
 DIST manual-2020.4.pdf 11851608 BLAKE2B 
7b7bdf08e8946fcc448543b08391b94a67fee60a8c810597c1f09f70443f9d7db817c99622dd0c21c6317f5fdcd6c4a88589ecac57055cb0cd8597d6021026e7
 SHA512 
928555663c77de36393e625c29d388d4e1c8c1298e7a993d871839e0d4d8d18d190221ad8f1d975bd072bdd6a061e9ea5b9295f2ecf45f24b6523ea5ea290fed
 DIST manual-2020.7.pdf 11850780 BLAKE2B 
38594e87993badfbbcf47d6010a7f67d3c3426dab85e1462916b4d62be27b5764953f912cf2b71ee24877e0bfa27b3f74431da2da81b4977d58cb66b2cc795a3
 SHA512 
4f184f2c90e0bac01a48069cc546cd5b04fa5f543f90dd2d68c6d17be278152fd09456b6a6c5c8236f8fb85a174d6ec7a1c7b44d437b4e6fea5d0ada73cec0f6
 DIST manual-2021.3.pdf 12255076 BLAKE2B 
6ca516b6832507c9d4100679d1f9bc9e3ab17d226849b050764b0d0626247dc57ce49985f9a7fc0061f3df278923a83faa367ca8ab91c37e5624dc584a51a822
 SHA512 
5d53798f30ea00fcb4e1b35f7eaa4bebfc05dafa4f2d0c197dcf2b57a624ad3a98b74fd90722e40d0ac13a6fff4ca231f9d6340f52ba94659c827c53c2f1cb16
 DIST manual-2021.5.pdf 12253641 BLAKE2B 
8850715a2bb21345e1c9735aca1a5dd2ad916e5a18881e7c9f3dda6f055ca12d9d379b74218138999ce50769efd8b9dd6447afbf70bbbefa2564dfb9fb276b91
 SHA512 
7635108c935e4953d722df6a16ee43edf97eef7e49f047218728f68f61f8f185192ff1d8b13a573b643b040955af211355a7b560c8a894c858d7f71249d41296
-DIST manual-2022.1.pdf 13069337 BLAKE2B 
fed4d5b5ddc2b91dd2de2873c3efc01f6ce65b033840a79fda471b4481920fa6c5f5d9f23660d97ba4c84e0c7b75dc4c8723ed51413ad55c980818c394e9fde1
 SHA512 
73455190aec62aaffe760dddac4de26ea148d825f4c2d0e04d38c88b87fe15b7138b5a872bf9757452ac39e68942943c73e19025730ece8052d4a6a1873ca40e
 DIST manual-2022.2.pdf 1307

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2022-09-15 Thread Alexey Shvetsov

commit: fbd0d4075b4cd2e6bced240cbcb944986f75b9e3
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Thu Sep 15 10:06:29 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Sep 15 10:08:44 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=fbd0d407

sci-chemistry/gromacs: add 2021.6

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/Manifest  |   3 +
 sci-chemistry/gromacs/gromacs-2021.6.ebuild | 355 
 2 files changed, 358 insertions(+)

diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest
index 6b31f7f7e8cb..f999c8f5def4 100644
--- a/sci-chemistry/gromacs/Manifest
+++ b/sci-chemistry/gromacs/Manifest
@@ -4,6 +4,7 @@ DIST gromacs-2020.4.tar.gz 29149899 BLAKE2B 
a07c8efd96137d58c1edf4ac9b5aafeb16d9
 DIST gromacs-2020.7.tar.gz 29175554 BLAKE2B 
98f1aa415946f8eb113febc81105f0c1b0919b96fc3c55a0ab83bf3950ff509b81eade92e645adb0bc2b407df239e20cf3f19828b6e08616437c8693c1fddcc8
 SHA512 
1d375c44cec38445e56cea252623b5b6c565680268999d4b6c14d6dc38759a27227655b2d29efaab9f9115d3677b446cb555e11cddafa0dc10c4827caaa2477b
 DIST gromacs-2021.3.tar.gz 37987972 BLAKE2B 
d71995c7d5a34978246e33dc637ac3d273e547afcf72d1a107026650f03286ecdf27e4b9a70113b3c3a01af59ad49ac5c813aa6e5d2e8eb29fd05582a7a28d34
 SHA512 
da420917d06de2e192dfbb4e1b9f46989ed05b5c7e641c657104ed8f2bd8b22509bffd1ecfd7c965c80544eafa6af12d6d0aba7e1e7d9d14a4a88fb3fbf394a5
 DIST gromacs-2021.5.tar.gz 38023772 BLAKE2B 
45e1f080b86626423e471f06b48b615db1913048f9f6998da8ce45408339b32f829d33dd2af57297a7d307fcffd556c333a58c309ee0f2adb021ca3755619b05
 SHA512 
56c1b312fc8e52ec6f86e445d2fa2d07107c461b35d4dc8cdf95580f05fd8e6c5fd671d0e72b2b9e74e3232bc8c41db496fe4bcaf2b9a3ae3c2cfa93489a31c5
+DIST gromacs-2021.6.tar.gz 38012702 BLAKE2B 
023ae37dc53643758afa050fd179cd66f3c6d6266f6afceee5eb35c890a3ae284956f2bc2409156d6e1fa03a7f23f7b04c27e1820547fd5f147b344d94da7d40
 SHA512 
65d7874e5cd838ce4f29d033c66304738ccc30f1987f9f8541725058b2fc4551302a399f6ce773e81ac9485963187c48feaf92c71789f4c345c82bd335f806a7
 DIST gromacs-2022.2.tar.gz 40350604 BLAKE2B 
789c8abc13b5c64af6b9d66efcf70449330b7e6a4bc127ba299e36eea925e9485809c11480ffd857805d9b453df363ce9bb05bc54b439801334767651defc0ef
 SHA512 
9f33518d2035afb37fc40377e575d497ff32bef2adb702669b35b1b51b1694b1113c5634fa6febd41955b6dfbfd055e7d523e1919bda1bf169a6d0c25700cef7
 DIST gromacs-2022.3.tar.gz 40359623 BLAKE2B 
23beacf7208df89aea6c3effe483361451a9ff20428fe79ec163a5eee4dc0db0bb00a2bee84bc9377ad272f216fd372eab1b77e8542ce231ac785b41b582fa15
 SHA512 
1a6a1674ed17dfd93dcd51537cd13c9df5bb9bd91c3a26601032f83b788a93689bac8070eb8e495a786d41cc9d474885538cbaffa4229da70dfa640ee42b7c60
 DIST manual-2018.8.pdf 10025023 BLAKE2B 
afb0a6e6a72d78df743fcb57e7c1716848589e571dd35167b957a9b407ca27978ccfb6cb9e0df9c9439b888f352501a00ba32281ed1e0b4193bd606f1d77152e
 SHA512 
b1972f7ce965bfc9377542993c5943ea4868a8ed23a969d4203264746d6bea3a7a65c6379196ece37fd6d68ec7ec80f827bde87d1049284af7082759a124f1d5
@@ -12,6 +13,7 @@ DIST manual-2020.4.pdf 11851608 BLAKE2B 
7b7bdf08e8946fcc448543b08391b94a67fee60a
 DIST manual-2020.7.pdf 11850780 BLAKE2B 
38594e87993badfbbcf47d6010a7f67d3c3426dab85e1462916b4d62be27b5764953f912cf2b71ee24877e0bfa27b3f74431da2da81b4977d58cb66b2cc795a3
 SHA512 
4f184f2c90e0bac01a48069cc546cd5b04fa5f543f90dd2d68c6d17be278152fd09456b6a6c5c8236f8fb85a174d6ec7a1c7b44d437b4e6fea5d0ada73cec0f6
 DIST manual-2021.3.pdf 12255076 BLAKE2B 
6ca516b6832507c9d4100679d1f9bc9e3ab17d226849b050764b0d0626247dc57ce49985f9a7fc0061f3df278923a83faa367ca8ab91c37e5624dc584a51a822
 SHA512 
5d53798f30ea00fcb4e1b35f7eaa4bebfc05dafa4f2d0c197dcf2b57a624ad3a98b74fd90722e40d0ac13a6fff4ca231f9d6340f52ba94659c827c53c2f1cb16
 DIST manual-2021.5.pdf 12253641 BLAKE2B 
8850715a2bb21345e1c9735aca1a5dd2ad916e5a18881e7c9f3dda6f055ca12d9d379b74218138999ce50769efd8b9dd6447afbf70bbbefa2564dfb9fb276b91
 SHA512 
7635108c935e4953d722df6a16ee43edf97eef7e49f047218728f68f61f8f185192ff1d8b13a573b643b040955af211355a7b560c8a894c858d7f71249d41296
+DIST manual-2021.6.pdf 12256595 BLAKE2B 
5d808e38571b38c1f6e0d115f6e604238206cc001f59d05ed855e80c324c0e6fd7767adb723b3d0edd1267ae5973a3b83b76bd04d2dc99769e6440600d8e2146
 SHA512 
64fe56422d7417f6f61b10346c99e24c3f423f0cedc3794e0809250282bc87ef692b47ae6c3f95ad7994aa3860ed82035cbacc76eb78a2f54a29052a05260af2
 DIST manual-2022.2.pdf 13075063 BLAKE2B 
1c9e525d45f1b9955f1aa2c4afa8c958b8ea62c51c28fafdebe302e3e5f6e04c97d1852e4ab2ba18149778d62959d9e7e42be9e4cd98f8187029cc590b1dfd9a
 SHA512 
9b4d9b13547e0210b633394e0c9cba183a827409b08d3b2995a4b64df7b7e7aef0441af240bf4cfcb2e24594ade27c25fee454b9fcf4bb5df0ded464c4f6368d
 DIST manual-2022.3.pdf 13080874 BLAKE2B 
3e70da8f70281c78084f5f9af86cdcda187c7b3085f08d95487992a65e31b7dae0b3e66d914dc0bccaf1bfe4c672d2018f38d0bde679759545aca55d1df1f554
 SHA512 
f634eac722d4a6f77820ef46024d9209de97fb6afb52333f200c2717049d8d09e31f0ef7bac8f154d79ae43fa31541ed6c3d839dd088433222ebdace298b5

[gentoo-commits] repo/gentoo:master commit in: profiles/

2022-09-15 Thread Alexey Shvetsov

commit: a34a195a9b018eecac186686a2f88d21daff2f04
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Thu Sep 15 08:07:56 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Sep 15 08:07:56 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a34a195a

profiles: Remove slurm p.mask since valnurable version no longer in tree

Bug: https://bugs.gentoo.org/631552
Bug: https://bugs.gentoo.org/790296
Bug: https://bugs.gentoo.org/842789
Signed-off-by: Alexey Shvetsov  gentoo.org>

 profiles/package.mask | 6 --
 1 file changed, 6 deletions(-)

diff --git a/profiles/package.mask b/profiles/package.mask
index 88e14b650d4b..0bdb302f3993 100644
--- a/profiles/package.mask
+++ b/profiles/package.mask
@@ -315,12 +315,6 @@ x11-terms/mrxvt
 # days, bug #618000
 media-libs/libaacplus
 
-# John Helmert III  (2022-08-14)
-# Many vulnerabilities (including code execution and root privilege
-# escalation), effectively unmaintained. Removal in 30 days, bugs
-# #631552, #790296, #842789
-sys-cluster/slurm
-
 # John Helmert III  (2022-08-14)
 # Vulnerable and unmaintained for years, many open bugs, no revdeps,
 # EAPI 6. Removal in 30 days, bug 733354

[gentoo-commits] repo/gentoo:master commit in: sys-cluster/slurm/

2022-09-15 Thread Alexey Shvetsov

commit: 0aea4dac7e2b6099fbe6d299ef0299e04c6832a6
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Thu Sep 15 08:05:51 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Sep 15 08:05:51 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0aea4dac

sys-cluster/slurm: Should fix possible privilege escalation

Bug: https://bugs.gentoo.org/631552
Signed-off-by: Alexey Shvetsov  gentoo.org>

 sys-cluster/slurm/slurm-22.05.3.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sys-cluster/slurm/slurm-22.05.3.ebuild 
b/sys-cluster/slurm/slurm-22.05.3.ebuild
index 607d3dc407bb..0b5e602258f3 100644
--- a/sys-cluster/slurm/slurm-22.05.3.ebuild
+++ b/sys-cluster/slurm/slurm-22.05.3.ebuild
@@ -243,7 +243,7 @@ pkg_preinst() {
 create_folders_and_fix_permissions() {
einfo "Fixing permissions in ${@}"
mkdir -p ${@} || die
-   chown -R ${PN}:${PN} ${@} || die
+   chown ${PN}:${PN} ${@} || die
 }
 
 pkg_postinst() {

[gentoo-commits] repo/gentoo:master commit in: sys-cluster/slurm/, sys-cluster/slurm/files/

2022-09-15 Thread Alexey Shvetsov

commit: b1947dd126dfbf1a19f631b770d3e36fffdf334e
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Thu Sep 15 08:00:39 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Sep 15 08:00:39 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b1947dd1

sys-cluster/slurm: Update to new version

Closes: https://bugs.gentoo.org/744148
Bug: https://bugs.gentoo.org/790296
Bug: https://bugs.gentoo.org/842789
Signed-off-by: Alexey Shvetsov  gentoo.org>

 sys-cluster/slurm/Manifest |   2 +-
 ...-lua.patch => slurm-22.05.3_autoconf-lua.patch} |  19 +-
 sys-cluster/slurm/metadata.xml |   6 +-
 sys-cluster/slurm/slurm-20.11.0.1-r105.ebuild  | 275 -
 ...-20.11.0.1-r104.ebuild => slurm-22.05.3.ebuild} |  34 ++-
 5 files changed, 38 insertions(+), 298 deletions(-)

diff --git a/sys-cluster/slurm/Manifest b/sys-cluster/slurm/Manifest
index ba0ae40fe894..94e324733874 100644
--- a/sys-cluster/slurm/Manifest
+++ b/sys-cluster/slurm/Manifest
@@ -1 +1 @@
-DIST slurm-20-11-0-1.tar.gz 8762691 BLAKE2B 
1e24a04b3faf97f4df98bd982d67d47f79670b863f466326e45e00fac0b99124122e94e30054a97471e4337234cbd213806791bdd5b3bddfeb05bef55f42931e
 SHA512 
9a57f2610f7294ba6cd265746b874e32a7930100f30c0adf41d95b261787c441bdcacaa641f0b9785150b94fc7d6b5b7608ec618f668bffcae6f774752f17678
+DIST slurm-22.05.3.tar.bz2 7098045 BLAKE2B 
597d297bf5f98a6aa98f1cc3047f9d0e88051f80e0d55e931d53a9b3e6bfa5911fe8aa486f56fef2d8f8d3a02fe41cf89625ae65e3737c87ceb9d123f03beb0d
 SHA512 
a500fb657f7d4d3d063307e176e26e537962434ff73ad8d13e16c34c70e94916fdab4e08e23d40aedec7edd86be996d2366e82fcb952c83f5498e59ca47c3f21

diff --git a/sys-cluster/slurm/files/slurm-20.11.0.1_autoconf-lua.patch 
b/sys-cluster/slurm/files/slurm-22.05.3_autoconf-lua.patch
similarity index 75%
rename from sys-cluster/slurm/files/slurm-20.11.0.1_autoconf-lua.patch
rename to sys-cluster/slurm/files/slurm-22.05.3_autoconf-lua.patch
index f17039e0b59d..f5723f7b85bc 100644
--- a/sys-cluster/slurm/files/slurm-20.11.0.1_autoconf-lua.patch
+++ b/sys-cluster/slurm/files/slurm-22.05.3_autoconf-lua.patch
@@ -1,23 +1,22 @@
-Prevent automagical detection of Lua, abort if Lua support has been
-requested but Lua cannot be found with pkg-config, and use the Lua
-pkg-config module set up by the eclass-provided wrapper (or unslotted Lua)
-instead of enumerating installed versions.
-
+diff --git a/auxdir/x_ac_lua.m4 b/auxdir/x_ac_lua.m4
+index 6941281bd5..206498191f 100644
 --- a/auxdir/x_ac_lua.m4
 +++ b/auxdir/x_ac_lua.m4
-@@ -12,18 +12,21 @@
+@@ -12,20 +12,21 @@
  
  AC_DEFUN([X_AC_LUA],
  [
 -  x_ac_lua_pkg_name="lua"
--  #check for 5.3 then 5.2 then 5.1
--  PKG_CHECK_EXISTS([lua5.3], [x_ac_lua_pkg_name=lua5.3],
+-  #check for 5.4, 5.3, 5.2 and then 5.1
+-  PKG_CHECK_EXISTS([lua5.4], [x_ac_lua_pkg_name=lua5.4],
+-  [PKG_CHECK_EXISTS([lua-5.4], [x_ac_lua_pkg_name=lua-5.4],
+-  [PKG_CHECK_EXISTS([lua5.3], [x_ac_lua_pkg_name=lua5.3],
 -  [PKG_CHECK_EXISTS([lua-5.3], [x_ac_lua_pkg_name=lua-5.3],
 -  [PKG_CHECK_EXISTS([lua5.2], [x_ac_lua_pkg_name=lua5.2],
 -  [PKG_CHECK_EXISTS([lua-5.2], [x_ac_lua_pkg_name=lua-5.2],
 -  [PKG_CHECK_EXISTS([lua5.1], [x_ac_lua_pkg_name=lua5.1],
 -  [PKG_CHECK_EXISTS([lua-5.1], [x_ac_lua_pkg_name=lua-5.1],
--  [x_ac_lua_pkg_name="lua >= 5.1"])])])])])])
+-  [x_ac_lua_pkg_name="lua >= 5.1"])])])])])])])])
 -  PKG_CHECK_MODULES([lua], ${x_ac_lua_pkg_name},
 -[x_ac_have_lua="yes"],
 -[x_ac_have_lua="no"])
@@ -39,7 +38,7 @@ instead of enumerating installed versions.
  
if test "x$x_ac_have_lua" = "xyes"; then
  saved_CFLAGS="$CFLAGS"
-@@ -52,8 +55,6 @@
+@@ -60,8 +61,6 @@ AC_DEFUN([X_AC_LUA],
  fi
  CFLAGS="$saved_CFLAGS"
  LIBS="$saved_LIBS"

diff --git a/sys-cluster/slurm/metadata.xml b/sys-cluster/slurm/metadata.xml
index fbaaba0061db..5f5481fc23fa 100644
--- a/sys-cluster/slurm/metadata.xml
+++ b/sys-cluster/slurm/metadata.xml
@@ -10,16 +10,20 @@
Gentoo Cluster Project


+   
Build html documentation
Build support for collecting some ipmi 
stats
Add support for json-persing via json-c
Enable authentication via munge
Allow multiple slurmd to run
-   Add support for netloc (amd64 only)
Add NUMA awareness
+   Enable the NVML device discovery
Add Infiniband support via ofed
+   Enable RRD export plugin
Install SQL server for slurmdbd
+   Enable interface to Slurm via REST 
API
Enable perl scripts that emulates pbs 
(qstat, qsub e

[gentoo-commits] repo/gentoo:master commit in: dev-embedded/platformio/

2022-09-14 Thread Alexey Shvetsov

commit: ecc2b632d84cca11c5b408adbb0f2a248af79dd6
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Wed Sep 14 20:15:31 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Wed Sep 14 20:20:46 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ecc2b632

dev-embedded/platformio: add 6.1.4

Closes: https://bugs.gentoo.org/862085
Signed-off-by: Alexey Shvetsov (Alexey Shvetsov)  gentoo.org>

 dev-embedded/platformio/Manifest|   1 +
 dev-embedded/platformio/platformio-6.1.4.ebuild | 116 
 2 files changed, 117 insertions(+)

diff --git a/dev-embedded/platformio/Manifest b/dev-embedded/platformio/Manifest
index 9756ab40a050..c0feb85128e1 100644
--- a/dev-embedded/platformio/Manifest
+++ b/dev-embedded/platformio/Manifest
@@ -1 +1,2 @@
 DIST platformio-6.0.2.tar.gz 285452 BLAKE2B 
c70523837b5118fcc1209a36a425fb6ab0aac73e56732916ff3d39fe87d50a47bf7d31d77324f491093ed366b1b3e4f88274e973bc896b164f5a07687a53bd12
 SHA512 
a2e48ad9ca22024a06509a9e36e5a7586088d0e8abd67d309d1988a8a112a41e301f077f1b466b5db390dc4048add570acd5bb762bbf22db69715dead0d8fc89
+DIST platformio-6.1.4.tar.gz 290408 BLAKE2B 
41a977d9b5e51a1e65ef61973301ab6e7e9ad0adbe6d4df2640b13f46623055df8303435a664acdd267ad8811229687b6abb088d5b331c33fb46bbe33ab188b1
 SHA512 
8c46b21212de2fb7579540c51b17061666b8abe4706800fe30fea053cb4233c17a03c2388295f9fb3a21602126f0c2c13f1dd80db962ef1b3d5c31c9a30791c7

diff --git a/dev-embedded/platformio/platformio-6.1.4.ebuild 
b/dev-embedded/platformio/platformio-6.1.4.ebuild
new file mode 100644
index ..827140a1feaa
--- /dev/null
+++ b/dev-embedded/platformio/platformio-6.1.4.ebuild
@@ -0,0 +1,116 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_SINGLE_IMPL=1
+DISTUTILS_USE_PEP517=setuptools
+PYTHON_COMPAT=( python3_{8..10} )
+
+inherit distutils-r1 udev
+
+DESCRIPTION="An open source ecosystem for IoT development"
+HOMEPAGE="https://platformio.org/;
+SRC_URI="https://github.com/platformio/platformio-core/archive/refs/tags/v${PV}.tar.gz
 -> ${P}.tar.gz"
+S="${WORKDIR}"/${PN}-core-${PV}
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+
+RDEPEND="
+   $(python_gen_cond_dep '
+   =dev-python/click-8[${PYTHON_USEDEP}]
+   =dev-python/pyserial-3[${PYTHON_USEDEP}]
+   =dev-python/requests-2.4[${PYTHON_USEDEP}]
+   =dev-python/semantic_version-2.9[${PYTHON_USEDEP}]
+   =dev-python/tabulate-0.8.3[${PYTHON_USEDEP}]
+   =dev-python/pyelftools-0.25[${PYTHON_USEDEP}]
+   =dev-python/marshmallow-2.20.5[${PYTHON_USEDEP}]
+   =dev-python/starlette-0.18*[${PYTHON_USEDEP}]
+   =dev-python/uvicorn-0.17*[${PYTHON_USEDEP}]
+   dev-python/wsproto[${PYTHON_USEDEP}]
+   >=dev-python/zeroconf-0.37[${PYTHON_USEDEP}]
+   ')
+   virtual/udev"
+DEPEND="virtual/udev"
+BDEPEND="test? ( $(python_gen_cond_dep 
'dev-python/jsondiff[${PYTHON_USEDEP}]') )"
+
+# This list could be refined a bit to have individual tests which need network
+# (within EPYTEST_DESELECT) but so many need it that it doesn't seem worth it 
right now.
+EPYTEST_IGNORE=(
+   # Requires network access
+   tests/test_builder.py
+   tests/package/test_manager.py
+   tests/package/test_manifest.py
+   tests/commands/test_platform.py
+   tests/commands/test_test.py
+   tests/commands/test_ci.py
+   tests/commands/test_init.py
+   tests/commands/test_lib.py
+   tests/commands/test_lib_complex.py
+   tests/commands/test_boards.py
+   tests/commands/test_check.py
+   tests/commands/test_run.py
+   tests/commands/pkg/test_exec.py
+   tests/commands/pkg/test_list.py
+   tests/commands/pkg/test_outdated.py
+   tests/commands/pkg/test_search.py
+   tests/commands/pkg/test_show.py
+   tests/commands/pkg/test_install.py
+   tests/commands/pkg/test_uninstall.py
+   tests/commands/pkg/test_update.py
+   tests/misc/ino2cpp/test_ino2cpp.py
+   tests/test_maintenance.py
+   tests/test_misc.py
+)
+
+EPYTEST_DESELECT=(
+   # Requires network access
+   tests/misc/test_maintenance.py::test_check_pio_upgrade
+   tests/misc/test_misc.py::test_ping_internet_ips
+   tests/misc/test_misc.py::test_api_cache
+)
+
+distutils_enable_tests pytest
+
+src_prepare() {
+   # Allow newer versions of zeroconf, Bug #831181.
+   # Also wsproto.
+   # ... and semantic_version, bug #853247.
+   sed \
+   -e '/zeroconf/s/<[0-9.*]*//' \
+   -e '/wsproto/s/==.*/"/' \
+   -e '/semantic_version/s/==[0-9.*]*//' \
+   -i setup.py || die
+
+   default
+}
+
+python_test() {
+   epytest -k "not skip_ci"

[gentoo-commits] repo/gentoo:master commit in: dev-embedded/platformio/

2022-09-14 Thread Alexey Shvetsov

commit: d133328a074da76a1f0172968f5fb360453bf725
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Wed Sep 14 20:13:52 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Wed Sep 14 20:20:39 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d133328a

dev-embedded/platformio: Add udev_reload

Closes: https://bugs.gentoo.org/842096
Signed-off-by: Alexey Shvetsov (Alexey Shvetsov)  gentoo.org>

 dev-embedded/platformio/Manifest   |  1 -
 dev-embedded/platformio/platformio-5.2.5-r2.ebuild | 87 --
 ...mio-6.0.2.ebuild => platformio-6.0.2-r1.ebuild} |  8 ++
 3 files changed, 8 insertions(+), 88 deletions(-)

diff --git a/dev-embedded/platformio/Manifest b/dev-embedded/platformio/Manifest
index 51724e0adc5b..9756ab40a050 100644
--- a/dev-embedded/platformio/Manifest
+++ b/dev-embedded/platformio/Manifest
@@ -1,2 +1 @@
-DIST platformio-5.2.5.tar.gz 254813 BLAKE2B 
96911a64f8e73567820ef2c7b2297ed9e32c36c65c49572af6037c2666da4072bdf920dc31e8de7e07296eb7f1b407c47191d68a80ed212a9c351dfca604b408
 SHA512 
cf939254c231bb2cb97ac509175b7235a6a2ba447e55a2d9a59a9fe610656743c190f00cb7bfa1fc2e6b64487be7f02a193e2f270236bbb9200537f19175dc22
 DIST platformio-6.0.2.tar.gz 285452 BLAKE2B 
c70523837b5118fcc1209a36a425fb6ab0aac73e56732916ff3d39fe87d50a47bf7d31d77324f491093ed366b1b3e4f88274e973bc896b164f5a07687a53bd12
 SHA512 
a2e48ad9ca22024a06509a9e36e5a7586088d0e8abd67d309d1988a8a112a41e301f077f1b466b5db390dc4048add570acd5bb762bbf22db69715dead0d8fc89

diff --git a/dev-embedded/platformio/platformio-5.2.5-r2.ebuild 
b/dev-embedded/platformio/platformio-5.2.5-r2.ebuild
deleted file mode 100644
index 9c0cbfa5bbd5..
--- a/dev-embedded/platformio/platformio-5.2.5-r2.ebuild
+++ /dev/null
@@ -1,87 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{8,9,10} )
-DISTUTILS_SINGLE_IMPL=1
-
-inherit distutils-r1 udev
-
-DESCRIPTION="An open source ecosystem for IoT development"
-HOMEPAGE="https://platformio.org/;
-SRC_URI="https://github.com/platformio/platformio-core/archive/refs/tags/v${PV}.tar.gz
 -> ${P}.tar.gz"
-S="${WORKDIR}"/${PN}-core-${PV}
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-
-RDEPEND="
-   $(python_gen_cond_dep '
-   =dev-python/click-8[${PYTHON_USEDEP}]
-   =dev-python/pyserial-3[${PYTHON_USEDEP}]
-   =dev-python/requests-2.4[${PYTHON_USEDEP}]
-   =dev-python/semantic_version-2.9[${PYTHON_USEDEP}]
-   =dev-python/tabulate-0.8.3[${PYTHON_USEDEP}]
-   =dev-python/pyelftools-0.25[${PYTHON_USEDEP}]
-   =dev-python/marshmallow-2.20.5[${PYTHON_USEDEP}]
-   =dev-python/starlette-0.18*[${PYTHON_USEDEP}]
-   =dev-python/uvicorn-0.17*[${PYTHON_USEDEP}]
-   dev-python/wsproto[${PYTHON_USEDEP}]
-   >=dev-python/zeroconf-0.37[${PYTHON_USEDEP}]
-   ')
-   virtual/udev"
-DEPEND="virtual/udev"
-BDEPEND="test? ( $(python_gen_cond_dep 
'dev-python/jsondiff[${PYTHON_USEDEP}]') )"
-
-# This list could be refined a bit to have individual tests which need network
-# (within EPYTEST_DESELECT) but so many need it that it doesn't seem worth it 
right now.
-EPYTEST_IGNORE=(
-   # Requires network access
-   tests/test_builder.py
-   tests/package/test_manager.py
-   tests/package/test_manifest.py
-   tests/commands/test_platform.py
-   tests/commands/test_test.py
-   tests/commands/test_ci.py
-   tests/commands/test_init.py
-   tests/commands/test_lib.py
-   tests/commands/test_lib_complex.py
-   tests/commands/test_boards.py
-   tests/commands/test_check.py
-   tests/test_ino2cpp.py
-   tests/test_maintenance.py
-   tests/test_misc.py
-)
-
-distutils_enable_tests pytest
-
-PATCHES=(
-   "${FILESDIR}"/${PN}-5.2.5-fix-semantic-version-dep.patch
-)
-
-src_prepare() {
-   # Allow newer versions of zeroconf, Bug #831181.
-   # Also wsproto.
-   sed -e '/zeroconf/s/==[0-9.*]*//' \
-   -e '/wsproto/s/==[0-9.*]*//' \
-   -i setup.py || die
-   default
-}
-
-src_install() {
-   distutils-r1_src_install
-   udev_dorules scripts/99-platformio-udev.rules
-}

diff --git a/dev-embedded/platformio/platformio-6.0.2.ebuild 
b/dev-embedded/platformio/platformio-6.0.2-r1.ebuild
similarity index 98%
rename from dev-embedded/platformio/platformio-6.0.2.ebuild
rename to dev-embedded/platformio/platformio-6.0.2-r1.ebuild
index bf24334631e4..827140a1feaa 100644
--- a/dev-embedded/platformio/platformio-6.0.2.ebuild
+++ b/dev-embedded/platformio/platformio-6.0.2-r1.ebuild
@@ -106,3 +106,11 @@ src_install() {
distutils-r1_src_install
udev_dorules scripts/99-platformio-udev.rules
 }
+
+pkg_postinst() {
+   udev_reload
+}
+
+pkg_postrm() {
+   udev_reload
+}

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2022-07-04 Thread Alexey Shvetsov

commit: d900224d1991882ded6cffbb497b1c843104c3e0
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Mon Jul  4 14:11:15 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Mon Jul  4 14:11:15 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d900224d

sci-chemistry/gromacs: Update 

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/gromacs-.ebuild | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/sci-chemistry/gromacs/gromacs-.ebuild 
b/sci-chemistry/gromacs/gromacs-.ebuild
index 3fb0dac08361..2b70114b7ade 100644
--- a/sci-chemistry/gromacs/gromacs-.ebuild
+++ b/sci-chemistry/gromacs/gromacs-.ebuild
@@ -24,7 +24,8 @@ else
http://ftp.gromacs.org/gromacs/${PN}-${PV/_/-}.tar.gz
doc? ( https://ftp.gromacs.org/manual/manual-${PV/_/-}.pdf -> 
manual-${PV}.pdf )
test? ( 
http://ftp.gromacs.org/regressiontests/regressiontests-${PV/_/-}.tar.gz )"
-   KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos"
+   # since 2022 arm support was dropped (but not arm64)
+   KEYWORDS="~amd64 -arm ~x86 ~amd64-linux ~x86-linux ~x64-macos"
 fi
 
 ACCE_IUSE="cpu_flags_x86_sse2 cpu_flags_x86_sse4_1 cpu_flags_x86_fma4 
cpu_flags_x86_avx cpu_flags_x86_avx2 cpu_flags_x86_avx512f cpu_flags_arm_neon"

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2022-07-04 Thread Alexey Shvetsov

commit: 72794fd1a8a1932c878b77db53707b5d7aae2958
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Mon Jul  4 14:09:00 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Mon Jul  4 14:10:19 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=72794fd1

sci-chemistry/gromacs: arm was dropped upstream since 2022.x

Closes: https://bugs.gentoo.org/844100

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/gromacs-2022.1.ebuild| 3 ++-
 sci-chemistry/gromacs/gromacs-2022.2.ebuild| 3 ++-
 sci-chemistry/gromacs/gromacs-2022..ebuild | 3 ++-
 3 files changed, 6 insertions(+), 3 deletions(-)

diff --git a/sci-chemistry/gromacs/gromacs-2022.1.ebuild 
b/sci-chemistry/gromacs/gromacs-2022.1.ebuild
index 501d77ec94c4..61b5edc51f15 100644
--- a/sci-chemistry/gromacs/gromacs-2022.1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2022.1.ebuild
@@ -24,7 +24,8 @@ else
http://ftp.gromacs.org/gromacs/${P}.tar.gz
doc? ( https://ftp.gromacs.org/manual/manual-${PV}.pdf )
test? ( 
http://ftp.gromacs.org/regressiontests/regressiontests-${PV}.tar.gz )"
-   KEYWORDS="~amd64 ~arm ~x86 ~amd64-linux ~x86-linux ~x64-macos"
+   # since 2022 arm support was dropped (but not arm64)
+   KEYWORDS="~amd64 -arm ~x86 ~amd64-linux ~x86-linux ~x64-macos"
 fi
 
 ACCE_IUSE="cpu_flags_x86_sse2 cpu_flags_x86_sse4_1 cpu_flags_x86_fma4 
cpu_flags_x86_avx cpu_flags_x86_avx2 cpu_flags_x86_avx512f cpu_flags_arm_neon"

diff --git a/sci-chemistry/gromacs/gromacs-2022.2.ebuild 
b/sci-chemistry/gromacs/gromacs-2022.2.ebuild
index 501d77ec94c4..61b5edc51f15 100644
--- a/sci-chemistry/gromacs/gromacs-2022.2.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2022.2.ebuild
@@ -24,7 +24,8 @@ else
http://ftp.gromacs.org/gromacs/${P}.tar.gz
doc? ( https://ftp.gromacs.org/manual/manual-${PV}.pdf )
test? ( 
http://ftp.gromacs.org/regressiontests/regressiontests-${PV}.tar.gz )"
-   KEYWORDS="~amd64 ~arm ~x86 ~amd64-linux ~x86-linux ~x64-macos"
+   # since 2022 arm support was dropped (but not arm64)
+   KEYWORDS="~amd64 -arm ~x86 ~amd64-linux ~x86-linux ~x64-macos"
 fi
 
 ACCE_IUSE="cpu_flags_x86_sse2 cpu_flags_x86_sse4_1 cpu_flags_x86_fma4 
cpu_flags_x86_avx cpu_flags_x86_avx2 cpu_flags_x86_avx512f cpu_flags_arm_neon"

diff --git a/sci-chemistry/gromacs/gromacs-2022..ebuild 
b/sci-chemistry/gromacs/gromacs-2022..ebuild
index 3fb0dac08361..2b70114b7ade 100644
--- a/sci-chemistry/gromacs/gromacs-2022..ebuild
+++ b/sci-chemistry/gromacs/gromacs-2022..ebuild
@@ -24,7 +24,8 @@ else
http://ftp.gromacs.org/gromacs/${PN}-${PV/_/-}.tar.gz
doc? ( https://ftp.gromacs.org/manual/manual-${PV/_/-}.pdf -> 
manual-${PV}.pdf )
test? ( 
http://ftp.gromacs.org/regressiontests/regressiontests-${PV/_/-}.tar.gz )"
-   KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos"
+   # since 2022 arm support was dropped (but not arm64)
+   KEYWORDS="~amd64 -arm ~x86 ~amd64-linux ~x86-linux ~x64-macos"
 fi
 
 ACCE_IUSE="cpu_flags_x86_sse2 cpu_flags_x86_sse4_1 cpu_flags_x86_fma4 
cpu_flags_x86_avx cpu_flags_x86_avx2 cpu_flags_x86_avx512f cpu_flags_arm_neon"

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2022-07-04 Thread Alexey Shvetsov

commit: b47979be6c8ef73c512a4976b3f3167a39d0d954
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Mon Jul  4 13:36:03 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Mon Jul  4 13:36:03 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b47979be

sci-chemistry/gromacs: eneble py3.11

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/gromacs-2020.4-r1.ebuild | 2 +-
 sci-chemistry/gromacs/gromacs-2020.7.ebuild| 2 +-
 sci-chemistry/gromacs/gromacs-2021.3-r1.ebuild | 2 +-
 sci-chemistry/gromacs/gromacs-2021.5.ebuild| 2 +-
 4 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/sci-chemistry/gromacs/gromacs-2020.4-r1.ebuild 
b/sci-chemistry/gromacs/gromacs-2020.4-r1.ebuild
index 3d38fc4523bb..178926f0014d 100644
--- a/sci-chemistry/gromacs/gromacs-2020.4-r1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2020.4-r1.ebuild
@@ -5,7 +5,7 @@ EAPI=7
 
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
-PYTHON_COMPAT=( python3_{8,9} )
+PYTHON_COMPAT=( python3_{8..11} )
 
 DISTUTILS_USE_SETUPTOOLS=no
 DISTUTILS_SINGLE_IMPL=1

diff --git a/sci-chemistry/gromacs/gromacs-2020.7.ebuild 
b/sci-chemistry/gromacs/gromacs-2020.7.ebuild
index 2e38306eb66f..de3335b0e75c 100644
--- a/sci-chemistry/gromacs/gromacs-2020.7.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2020.7.ebuild
@@ -5,7 +5,7 @@ EAPI=8
 
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
-PYTHON_COMPAT=( python3_{8..10} )
+PYTHON_COMPAT=( python3_{8..11} )
 
 DISTUTILS_USE_SETUPTOOLS=no
 DISTUTILS_SINGLE_IMPL=1

diff --git a/sci-chemistry/gromacs/gromacs-2021.3-r1.ebuild 
b/sci-chemistry/gromacs/gromacs-2021.3-r1.ebuild
index 1ea7d0f255b7..68d9a92c288d 100644
--- a/sci-chemistry/gromacs/gromacs-2021.3-r1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2021.3-r1.ebuild
@@ -5,7 +5,7 @@ EAPI=8
 
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
-PYTHON_COMPAT=( python3_{8,9} )
+PYTHON_COMPAT=( python3_{8..11} )
 
 DISTUTILS_USE_SETUPTOOLS=no
 DISTUTILS_SINGLE_IMPL=1

diff --git a/sci-chemistry/gromacs/gromacs-2021.5.ebuild 
b/sci-chemistry/gromacs/gromacs-2021.5.ebuild
index b797cea596be..2f7f4f77115a 100644
--- a/sci-chemistry/gromacs/gromacs-2021.5.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2021.5.ebuild
@@ -5,7 +5,7 @@ EAPI=8
 
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
-PYTHON_COMPAT=( python3_{8..10} )
+PYTHON_COMPAT=( python3_{8..11} )
 
 DISTUTILS_USE_SETUPTOOLS=no
 DISTUTILS_SINGLE_IMPL=1

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2022-07-04 Thread Alexey Shvetsov

commit: 14911c158e6f7c83c6122a56c9a16d7480f66fbe
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Mon Jul  4 13:31:52 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Mon Jul  4 13:31:52 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=14911c15

sci-chemistry/gromacs: enable py3.11

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/gromacs-2022..ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-chemistry/gromacs/gromacs-2022..ebuild 
b/sci-chemistry/gromacs/gromacs-2022..ebuild
index 101a76d94cf9..3fb0dac08361 100644
--- a/sci-chemistry/gromacs/gromacs-2022..ebuild
+++ b/sci-chemistry/gromacs/gromacs-2022..ebuild
@@ -5,7 +5,7 @@ EAPI=8
 
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
-PYTHON_COMPAT=( python3_{8..10} )
+PYTHON_COMPAT=( python3_{8..11} )
 
 DISTUTILS_USE_SETUPTOOLS=no
 DISTUTILS_SINGLE_IMPL=1

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2022-07-04 Thread Alexey Shvetsov

commit: e8414c8db206fd2e34c275b07c96110929266c12
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Mon Jul  4 13:32:31 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Mon Jul  4 13:32:31 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e8414c8d

sci-chemistry/gromacs: enable py3.11

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/gromacs-.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-chemistry/gromacs/gromacs-.ebuild 
b/sci-chemistry/gromacs/gromacs-.ebuild
index 101a76d94cf9..3fb0dac08361 100644
--- a/sci-chemistry/gromacs/gromacs-.ebuild
+++ b/sci-chemistry/gromacs/gromacs-.ebuild
@@ -5,7 +5,7 @@ EAPI=8
 
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
-PYTHON_COMPAT=( python3_{8..10} )
+PYTHON_COMPAT=( python3_{8..11} )
 
 DISTUTILS_USE_SETUPTOOLS=no
 DISTUTILS_SINGLE_IMPL=1

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2022-07-04 Thread Alexey Shvetsov

commit: 81cdcf86757cb1b9839c112a7d6c433e9c82f792
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Mon Jul  4 13:33:52 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Mon Jul  4 13:33:52 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=81cdcf86

sci-chemistry/gromacs: enable py3.11

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/gromacs-2021..ebuild | 2 +-
 sci-chemistry/gromacs/gromacs-2022.1.ebuild| 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-chemistry/gromacs/gromacs-2021..ebuild 
b/sci-chemistry/gromacs/gromacs-2021..ebuild
index 8e32fc1644e1..af0fa65d05eb 100644
--- a/sci-chemistry/gromacs/gromacs-2021..ebuild
+++ b/sci-chemistry/gromacs/gromacs-2021..ebuild
@@ -5,7 +5,7 @@ EAPI=8
 
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
-PYTHON_COMPAT=( python3_{8..10} )
+PYTHON_COMPAT=( python3_{8..11} )
 
 DISTUTILS_USE_SETUPTOOLS=no
 DISTUTILS_SINGLE_IMPL=1

diff --git a/sci-chemistry/gromacs/gromacs-2022.1.ebuild 
b/sci-chemistry/gromacs/gromacs-2022.1.ebuild
index 6784e38c84da..501d77ec94c4 100644
--- a/sci-chemistry/gromacs/gromacs-2022.1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2022.1.ebuild
@@ -5,7 +5,7 @@ EAPI=8
 
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
-PYTHON_COMPAT=( python3_{8..10} )
+PYTHON_COMPAT=( python3_{8..11} )
 
 DISTUTILS_USE_SETUPTOOLS=no
 DISTUTILS_SINGLE_IMPL=1

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2022-07-04 Thread Alexey Shvetsov

commit: 28532322e743d2f7a260bab67b6b8821aef651a5
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Mon Jul  4 11:43:52 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Mon Jul  4 13:31:00 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=28532322

sci-chemistry/gromacs: drop 2022

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/Manifest|   3 -
 sci-chemistry/gromacs/gromacs-2022.ebuild | 335 --
 2 files changed, 338 deletions(-)

diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest
index d1d64f23b767..9b35e520e111 100644
--- a/sci-chemistry/gromacs/Manifest
+++ b/sci-chemistry/gromacs/Manifest
@@ -6,7 +6,6 @@ DIST gromacs-2021.3.tar.gz 37987972 BLAKE2B 
d71995c7d5a34978246e33dc637ac3d273e5
 DIST gromacs-2021.5.tar.gz 38023772 BLAKE2B 
45e1f080b86626423e471f06b48b615db1913048f9f6998da8ce45408339b32f829d33dd2af57297a7d307fcffd556c333a58c309ee0f2adb021ca3755619b05
 SHA512 
56c1b312fc8e52ec6f86e445d2fa2d07107c461b35d4dc8cdf95580f05fd8e6c5fd671d0e72b2b9e74e3232bc8c41db496fe4bcaf2b9a3ae3c2cfa93489a31c5
 DIST gromacs-2022.1.tar.gz 40375423 BLAKE2B 
fe28ec4c080500d0248bd3d37ec742e8cf51ba3520b5a7c3f640413b232fcf96354940c743e2a54a9fde04c98ecb2fd317863d8c06b008f516fefc0e9e1197dd
 SHA512 
80c98badb7ebad171925486d1676b64e787cf8cbfb8f1b1cf1ccab8cbf8d8340f7fdd084dfb7388afc7a3aef23b95d603265305faf82125324307d86460c6f17
 DIST gromacs-2022.2.tar.gz 40350604 BLAKE2B 
789c8abc13b5c64af6b9d66efcf70449330b7e6a4bc127ba299e36eea925e9485809c11480ffd857805d9b453df363ce9bb05bc54b439801334767651defc0ef
 SHA512 
9f33518d2035afb37fc40377e575d497ff32bef2adb702669b35b1b51b1694b1113c5634fa6febd41955b6dfbfd055e7d523e1919bda1bf169a6d0c25700cef7
-DIST gromacs-2022.tar.gz 40353044 BLAKE2B 
e9ba72092467c143be7de0739e71181f384a6bb463338c58c60a5d56f30b960651bda60c1df4fa424e237f1ae90d5d7bab19670ec22cd21bba3cb638f8e5b1ba
 SHA512 
f256b032b226c14407ba21c7b825b6bf3f7b3595318b8638594d81ed6346b0b8563098f6ff7005c2ba125447c5d2dff750829b24781c8f1ea266e6465f627db1
 DIST manual-2018.8.pdf 10025023 BLAKE2B 
afb0a6e6a72d78df743fcb57e7c1716848589e571dd35167b957a9b407ca27978ccfb6cb9e0df9c9439b888f352501a00ba32281ed1e0b4193bd606f1d77152e
 SHA512 
b1972f7ce965bfc9377542993c5943ea4868a8ed23a969d4203264746d6bea3a7a65c6379196ece37fd6d68ec7ec80f827bde87d1049284af7082759a124f1d5
 DIST manual-2019.6.pdf 12702376 BLAKE2B 
c350127bc06a9eb3dee73da39037c84daeb89500e23cb131bd19a150bf60602d4dde7611e0c6f0f344af4093e96a899303dac71b4df56fd0c44c3a48a56606b7
 SHA512 
dfdff67c2c1c9ce1f1c236b7686c5331b0fe86951da6c98eddd6a3e748815e0be0a9653ae4318469fcdd913c4e7c355d64a997cc80b9d9fbe6282ef6d98e61eb
 DIST manual-2020.4.pdf 11851608 BLAKE2B 
7b7bdf08e8946fcc448543b08391b94a67fee60a8c810597c1f09f70443f9d7db817c99622dd0c21c6317f5fdcd6c4a88589ecac57055cb0cd8597d6021026e7
 SHA512 
928555663c77de36393e625c29d388d4e1c8c1298e7a993d871839e0d4d8d18d190221ad8f1d975bd072bdd6a061e9ea5b9295f2ecf45f24b6523ea5ea290fed
@@ -15,7 +14,6 @@ DIST manual-2021.3.pdf 12255076 BLAKE2B 
6ca516b6832507c9d4100679d1f9bc9e3ab17d22
 DIST manual-2021.5.pdf 12253641 BLAKE2B 
8850715a2bb21345e1c9735aca1a5dd2ad916e5a18881e7c9f3dda6f055ca12d9d379b74218138999ce50769efd8b9dd6447afbf70bbbefa2564dfb9fb276b91
 SHA512 
7635108c935e4953d722df6a16ee43edf97eef7e49f047218728f68f61f8f185192ff1d8b13a573b643b040955af211355a7b560c8a894c858d7f71249d41296
 DIST manual-2022.1.pdf 13069337 BLAKE2B 
fed4d5b5ddc2b91dd2de2873c3efc01f6ce65b033840a79fda471b4481920fa6c5f5d9f23660d97ba4c84e0c7b75dc4c8723ed51413ad55c980818c394e9fde1
 SHA512 
73455190aec62aaffe760dddac4de26ea148d825f4c2d0e04d38c88b87fe15b7138b5a872bf9757452ac39e68942943c73e19025730ece8052d4a6a1873ca40e
 DIST manual-2022.2.pdf 13075063 BLAKE2B 
1c9e525d45f1b9955f1aa2c4afa8c958b8ea62c51c28fafdebe302e3e5f6e04c97d1852e4ab2ba18149778d62959d9e7e42be9e4cd98f8187029cc590b1dfd9a
 SHA512 
9b4d9b13547e0210b633394e0c9cba183a827409b08d3b2995a4b64df7b7e7aef0441af240bf4cfcb2e24594ade27c25fee454b9fcf4bb5df0ded464c4f6368d
-DIST manual-2022.pdf 13060966 BLAKE2B 
e1684d22e16d2bad878cd0adbac0df74a268f89034756a34374908afc7f2562a05dbdf91b3dcbdb98a45b3d21140b02a2df26e0f997c1f501347e102069f22c2
 SHA512 
0d9bd1fbe2db122f434df1565ba7c9ea5ad168f73855724a6cb488244eda13d8d47b2d534a6873dc7204012156fbf669bdaf7ca7d03a914745f60950392e6d28
 DIST regressiontests-2018.8.tar.gz 67855469 BLAKE2B 
34c9b339f6229f483afbb5192ee6ba8b8f72d5c26907a853af9c53dfece0d88739e48f6b44b78d1c010f988f9385d077285300522164f533a5861e9dda879275
 SHA512 
3642389d27bd1942cd0f091c940ae97b197b94856a387fe581dc516b0d4169480f16551d4ba357f9282b3337d605c286d51dd38112ac87c826dda634904836bb
 DIST regressiontests-2019.6.tar.gz 67643195 BLAKE2B 
1e054e24b187946f7ea28090d4f20cf8e1d79a26253f57ba07d130e0773d8541b8a1552a38023d31a68ce8bc62d8e0af1d98609234bb3e7d3e6d567307ebb386
 SHA512 
eacf1c55b982515a305c29459fe80a7cd558a8481e5689962aa956148af542568b1d1ce59c6784ecb0afd4768c2b664afa21e12af2d89ae2b06b1ba61ad72

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2022-07-04 Thread Alexey Shvetsov

commit: 1bb24aff11483416adde17d1da2c8113c9f8fa3d
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Mon Jul  4 11:43:37 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Mon Jul  4 13:30:59 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1bb24aff

sci-chemistry/gromacs: add 2022.2

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/Manifest  |   3 +
 sci-chemistry/gromacs/gromacs-2022.2.ebuild | 335 
 2 files changed, 338 insertions(+)

diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest
index 4e4bc9214391..d1d64f23b767 100644
--- a/sci-chemistry/gromacs/Manifest
+++ b/sci-chemistry/gromacs/Manifest
@@ -5,6 +5,7 @@ DIST gromacs-2020.7.tar.gz 29175554 BLAKE2B 
98f1aa415946f8eb113febc81105f0c1b091
 DIST gromacs-2021.3.tar.gz 37987972 BLAKE2B 
d71995c7d5a34978246e33dc637ac3d273e547afcf72d1a107026650f03286ecdf27e4b9a70113b3c3a01af59ad49ac5c813aa6e5d2e8eb29fd05582a7a28d34
 SHA512 
da420917d06de2e192dfbb4e1b9f46989ed05b5c7e641c657104ed8f2bd8b22509bffd1ecfd7c965c80544eafa6af12d6d0aba7e1e7d9d14a4a88fb3fbf394a5
 DIST gromacs-2021.5.tar.gz 38023772 BLAKE2B 
45e1f080b86626423e471f06b48b615db1913048f9f6998da8ce45408339b32f829d33dd2af57297a7d307fcffd556c333a58c309ee0f2adb021ca3755619b05
 SHA512 
56c1b312fc8e52ec6f86e445d2fa2d07107c461b35d4dc8cdf95580f05fd8e6c5fd671d0e72b2b9e74e3232bc8c41db496fe4bcaf2b9a3ae3c2cfa93489a31c5
 DIST gromacs-2022.1.tar.gz 40375423 BLAKE2B 
fe28ec4c080500d0248bd3d37ec742e8cf51ba3520b5a7c3f640413b232fcf96354940c743e2a54a9fde04c98ecb2fd317863d8c06b008f516fefc0e9e1197dd
 SHA512 
80c98badb7ebad171925486d1676b64e787cf8cbfb8f1b1cf1ccab8cbf8d8340f7fdd084dfb7388afc7a3aef23b95d603265305faf82125324307d86460c6f17
+DIST gromacs-2022.2.tar.gz 40350604 BLAKE2B 
789c8abc13b5c64af6b9d66efcf70449330b7e6a4bc127ba299e36eea925e9485809c11480ffd857805d9b453df363ce9bb05bc54b439801334767651defc0ef
 SHA512 
9f33518d2035afb37fc40377e575d497ff32bef2adb702669b35b1b51b1694b1113c5634fa6febd41955b6dfbfd055e7d523e1919bda1bf169a6d0c25700cef7
 DIST gromacs-2022.tar.gz 40353044 BLAKE2B 
e9ba72092467c143be7de0739e71181f384a6bb463338c58c60a5d56f30b960651bda60c1df4fa424e237f1ae90d5d7bab19670ec22cd21bba3cb638f8e5b1ba
 SHA512 
f256b032b226c14407ba21c7b825b6bf3f7b3595318b8638594d81ed6346b0b8563098f6ff7005c2ba125447c5d2dff750829b24781c8f1ea266e6465f627db1
 DIST manual-2018.8.pdf 10025023 BLAKE2B 
afb0a6e6a72d78df743fcb57e7c1716848589e571dd35167b957a9b407ca27978ccfb6cb9e0df9c9439b888f352501a00ba32281ed1e0b4193bd606f1d77152e
 SHA512 
b1972f7ce965bfc9377542993c5943ea4868a8ed23a969d4203264746d6bea3a7a65c6379196ece37fd6d68ec7ec80f827bde87d1049284af7082759a124f1d5
 DIST manual-2019.6.pdf 12702376 BLAKE2B 
c350127bc06a9eb3dee73da39037c84daeb89500e23cb131bd19a150bf60602d4dde7611e0c6f0f344af4093e96a899303dac71b4df56fd0c44c3a48a56606b7
 SHA512 
dfdff67c2c1c9ce1f1c236b7686c5331b0fe86951da6c98eddd6a3e748815e0be0a9653ae4318469fcdd913c4e7c355d64a997cc80b9d9fbe6282ef6d98e61eb
@@ -13,6 +14,7 @@ DIST manual-2020.7.pdf 11850780 BLAKE2B 
38594e87993badfbbcf47d6010a7f67d3c3426da
 DIST manual-2021.3.pdf 12255076 BLAKE2B 
6ca516b6832507c9d4100679d1f9bc9e3ab17d226849b050764b0d0626247dc57ce49985f9a7fc0061f3df278923a83faa367ca8ab91c37e5624dc584a51a822
 SHA512 
5d53798f30ea00fcb4e1b35f7eaa4bebfc05dafa4f2d0c197dcf2b57a624ad3a98b74fd90722e40d0ac13a6fff4ca231f9d6340f52ba94659c827c53c2f1cb16
 DIST manual-2021.5.pdf 12253641 BLAKE2B 
8850715a2bb21345e1c9735aca1a5dd2ad916e5a18881e7c9f3dda6f055ca12d9d379b74218138999ce50769efd8b9dd6447afbf70bbbefa2564dfb9fb276b91
 SHA512 
7635108c935e4953d722df6a16ee43edf97eef7e49f047218728f68f61f8f185192ff1d8b13a573b643b040955af211355a7b560c8a894c858d7f71249d41296
 DIST manual-2022.1.pdf 13069337 BLAKE2B 
fed4d5b5ddc2b91dd2de2873c3efc01f6ce65b033840a79fda471b4481920fa6c5f5d9f23660d97ba4c84e0c7b75dc4c8723ed51413ad55c980818c394e9fde1
 SHA512 
73455190aec62aaffe760dddac4de26ea148d825f4c2d0e04d38c88b87fe15b7138b5a872bf9757452ac39e68942943c73e19025730ece8052d4a6a1873ca40e
+DIST manual-2022.2.pdf 13075063 BLAKE2B 
1c9e525d45f1b9955f1aa2c4afa8c958b8ea62c51c28fafdebe302e3e5f6e04c97d1852e4ab2ba18149778d62959d9e7e42be9e4cd98f8187029cc590b1dfd9a
 SHA512 
9b4d9b13547e0210b633394e0c9cba183a827409b08d3b2995a4b64df7b7e7aef0441af240bf4cfcb2e24594ade27c25fee454b9fcf4bb5df0ded464c4f6368d
 DIST manual-2022.pdf 13060966 BLAKE2B 
e1684d22e16d2bad878cd0adbac0df74a268f89034756a34374908afc7f2562a05dbdf91b3dcbdb98a45b3d21140b02a2df26e0f997c1f501347e102069f22c2
 SHA512 
0d9bd1fbe2db122f434df1565ba7c9ea5ad168f73855724a6cb488244eda13d8d47b2d534a6873dc7204012156fbf669bdaf7ca7d03a914745f60950392e6d28
 DIST regressiontests-2018.8.tar.gz 67855469 BLAKE2B 
34c9b339f6229f483afbb5192ee6ba8b8f72d5c26907a853af9c53dfece0d88739e48f6b44b78d1c010f988f9385d077285300522164f533a5861e9dda879275
 SHA512 
3642389d27bd1942cd0f091c940ae97b197b94856a387fe581dc516b0d4169480f16551d4ba357f9282b3337d605c286d51dd38112ac87c826dda63490483

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2022-04-28 Thread Alexey Shvetsov

commit: bbb7f1da16441e92716829c4d0cd638477765735
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Thu Apr 28 08:06:18 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Apr 28 08:36:59 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=bbb7f1da

sci-chemistry/gromacs: add 2022.1

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/Manifest  |   3 +
 sci-chemistry/gromacs/gromacs-2022.1.ebuild | 336 
 2 files changed, 339 insertions(+)

diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest
index 7ebd8ba87eda..4e4bc9214391 100644
--- a/sci-chemistry/gromacs/Manifest
+++ b/sci-chemistry/gromacs/Manifest
@@ -4,6 +4,7 @@ DIST gromacs-2020.4.tar.gz 29149899 BLAKE2B 
a07c8efd96137d58c1edf4ac9b5aafeb16d9
 DIST gromacs-2020.7.tar.gz 29175554 BLAKE2B 
98f1aa415946f8eb113febc81105f0c1b0919b96fc3c55a0ab83bf3950ff509b81eade92e645adb0bc2b407df239e20cf3f19828b6e08616437c8693c1fddcc8
 SHA512 
1d375c44cec38445e56cea252623b5b6c565680268999d4b6c14d6dc38759a27227655b2d29efaab9f9115d3677b446cb555e11cddafa0dc10c4827caaa2477b
 DIST gromacs-2021.3.tar.gz 37987972 BLAKE2B 
d71995c7d5a34978246e33dc637ac3d273e547afcf72d1a107026650f03286ecdf27e4b9a70113b3c3a01af59ad49ac5c813aa6e5d2e8eb29fd05582a7a28d34
 SHA512 
da420917d06de2e192dfbb4e1b9f46989ed05b5c7e641c657104ed8f2bd8b22509bffd1ecfd7c965c80544eafa6af12d6d0aba7e1e7d9d14a4a88fb3fbf394a5
 DIST gromacs-2021.5.tar.gz 38023772 BLAKE2B 
45e1f080b86626423e471f06b48b615db1913048f9f6998da8ce45408339b32f829d33dd2af57297a7d307fcffd556c333a58c309ee0f2adb021ca3755619b05
 SHA512 
56c1b312fc8e52ec6f86e445d2fa2d07107c461b35d4dc8cdf95580f05fd8e6c5fd671d0e72b2b9e74e3232bc8c41db496fe4bcaf2b9a3ae3c2cfa93489a31c5
+DIST gromacs-2022.1.tar.gz 40375423 BLAKE2B 
fe28ec4c080500d0248bd3d37ec742e8cf51ba3520b5a7c3f640413b232fcf96354940c743e2a54a9fde04c98ecb2fd317863d8c06b008f516fefc0e9e1197dd
 SHA512 
80c98badb7ebad171925486d1676b64e787cf8cbfb8f1b1cf1ccab8cbf8d8340f7fdd084dfb7388afc7a3aef23b95d603265305faf82125324307d86460c6f17
 DIST gromacs-2022.tar.gz 40353044 BLAKE2B 
e9ba72092467c143be7de0739e71181f384a6bb463338c58c60a5d56f30b960651bda60c1df4fa424e237f1ae90d5d7bab19670ec22cd21bba3cb638f8e5b1ba
 SHA512 
f256b032b226c14407ba21c7b825b6bf3f7b3595318b8638594d81ed6346b0b8563098f6ff7005c2ba125447c5d2dff750829b24781c8f1ea266e6465f627db1
 DIST manual-2018.8.pdf 10025023 BLAKE2B 
afb0a6e6a72d78df743fcb57e7c1716848589e571dd35167b957a9b407ca27978ccfb6cb9e0df9c9439b888f352501a00ba32281ed1e0b4193bd606f1d77152e
 SHA512 
b1972f7ce965bfc9377542993c5943ea4868a8ed23a969d4203264746d6bea3a7a65c6379196ece37fd6d68ec7ec80f827bde87d1049284af7082759a124f1d5
 DIST manual-2019.6.pdf 12702376 BLAKE2B 
c350127bc06a9eb3dee73da39037c84daeb89500e23cb131bd19a150bf60602d4dde7611e0c6f0f344af4093e96a899303dac71b4df56fd0c44c3a48a56606b7
 SHA512 
dfdff67c2c1c9ce1f1c236b7686c5331b0fe86951da6c98eddd6a3e748815e0be0a9653ae4318469fcdd913c4e7c355d64a997cc80b9d9fbe6282ef6d98e61eb
@@ -11,6 +12,7 @@ DIST manual-2020.4.pdf 11851608 BLAKE2B 
7b7bdf08e8946fcc448543b08391b94a67fee60a
 DIST manual-2020.7.pdf 11850780 BLAKE2B 
38594e87993badfbbcf47d6010a7f67d3c3426dab85e1462916b4d62be27b5764953f912cf2b71ee24877e0bfa27b3f74431da2da81b4977d58cb66b2cc795a3
 SHA512 
4f184f2c90e0bac01a48069cc546cd5b04fa5f543f90dd2d68c6d17be278152fd09456b6a6c5c8236f8fb85a174d6ec7a1c7b44d437b4e6fea5d0ada73cec0f6
 DIST manual-2021.3.pdf 12255076 BLAKE2B 
6ca516b6832507c9d4100679d1f9bc9e3ab17d226849b050764b0d0626247dc57ce49985f9a7fc0061f3df278923a83faa367ca8ab91c37e5624dc584a51a822
 SHA512 
5d53798f30ea00fcb4e1b35f7eaa4bebfc05dafa4f2d0c197dcf2b57a624ad3a98b74fd90722e40d0ac13a6fff4ca231f9d6340f52ba94659c827c53c2f1cb16
 DIST manual-2021.5.pdf 12253641 BLAKE2B 
8850715a2bb21345e1c9735aca1a5dd2ad916e5a18881e7c9f3dda6f055ca12d9d379b74218138999ce50769efd8b9dd6447afbf70bbbefa2564dfb9fb276b91
 SHA512 
7635108c935e4953d722df6a16ee43edf97eef7e49f047218728f68f61f8f185192ff1d8b13a573b643b040955af211355a7b560c8a894c858d7f71249d41296
+DIST manual-2022.1.pdf 13069337 BLAKE2B 
fed4d5b5ddc2b91dd2de2873c3efc01f6ce65b033840a79fda471b4481920fa6c5f5d9f23660d97ba4c84e0c7b75dc4c8723ed51413ad55c980818c394e9fde1
 SHA512 
73455190aec62aaffe760dddac4de26ea148d825f4c2d0e04d38c88b87fe15b7138b5a872bf9757452ac39e68942943c73e19025730ece8052d4a6a1873ca40e
 DIST manual-2022.pdf 13060966 BLAKE2B 
e1684d22e16d2bad878cd0adbac0df74a268f89034756a34374908afc7f2562a05dbdf91b3dcbdb98a45b3d21140b02a2df26e0f997c1f501347e102069f22c2
 SHA512 
0d9bd1fbe2db122f434df1565ba7c9ea5ad168f73855724a6cb488244eda13d8d47b2d534a6873dc7204012156fbf669bdaf7ca7d03a914745f60950392e6d28
 DIST regressiontests-2018.8.tar.gz 67855469 BLAKE2B 
34c9b339f6229f483afbb5192ee6ba8b8f72d5c26907a853af9c53dfece0d88739e48f6b44b78d1c010f988f9385d077285300522164f533a5861e9dda879275
 SHA512 
3642389d27bd1942cd0f091c940ae97b197b94856a387fe581dc516b0d4169480f16551d4ba357f9282b3337d605c286d51dd38112ac87c826dda63490483

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/

2022-04-28 Thread Alexey Shvetsov

commit: a11064db0374514e162b889d3e5b99129a6b2d3e
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Thu Apr 28 08:07:30 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Thu Apr 28 08:36:59 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a11064db

sci-chemistry/gromacs: dropped unused eclass

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-chemistry/gromacs/gromacs-2019.6-r1.ebuild | 2 +-
 sci-chemistry/gromacs/gromacs-2019.6-r2.ebuild | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-chemistry/gromacs/gromacs-2019.6-r1.ebuild 
b/sci-chemistry/gromacs/gromacs-2019.6-r1.ebuild
index 7a2a36b88257..cacbc3eef174 100644
--- a/sci-chemistry/gromacs/gromacs-2019.6-r1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2019.6-r1.ebuild
@@ -5,7 +5,7 @@ EAPI=7
 
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
-inherit bash-completion-r1 cmake cuda python-utils-r1 readme.gentoo-r1 
toolchain-funcs xdg-utils
+inherit bash-completion-r1 cmake cuda readme.gentoo-r1 toolchain-funcs 
xdg-utils
 
 SRC_URI="
http://ftp.gromacs.org/gromacs/${PN}-${PV/_/-}.tar.gz

diff --git a/sci-chemistry/gromacs/gromacs-2019.6-r2.ebuild 
b/sci-chemistry/gromacs/gromacs-2019.6-r2.ebuild
index 15ec95dcc47e..b01b57f54196 100644
--- a/sci-chemistry/gromacs/gromacs-2019.6-r2.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2019.6-r2.ebuild
@@ -5,7 +5,7 @@ EAPI=7
 
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
-inherit bash-completion-r1 cmake cuda python-utils-r1 readme.gentoo-r1 
toolchain-funcs xdg-utils
+inherit bash-completion-r1 cmake cuda readme.gentoo-r1 toolchain-funcs 
xdg-utils
 
 SRC_URI="
http://ftp.gromacs.org/gromacs/${PN}-${PV/_/-}.tar.gz

[gentoo-commits] repo/gentoo:master commit in: app-misc/geoclue/

2022-04-18 Thread Alexey Shvetsov

commit: edd71e98657232fd7b61b272fe804969bf9a07f5
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Mon Apr 18 19:15:15 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Mon Apr 18 19:15:15 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=edd71e98

app-misc/geoclue: enable py3.10

Signed-off-by: Alexey Shvetsov  gentoo.org>

 app-misc/geoclue/geoclue-2.5.7.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/app-misc/geoclue/geoclue-2.5.7.ebuild 
b/app-misc/geoclue/geoclue-2.5.7.ebuild
index 4ebabf0ba6f2..fb5eef3a6052 100644
--- a/app-misc/geoclue/geoclue-2.5.7.ebuild
+++ b/app-misc/geoclue/geoclue-2.5.7.ebuild
@@ -1,8 +1,8 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
-PYTHON_COMPAT=( python3_{7..9} )
+PYTHON_COMPAT=( python3_{7..10} )
 PYTHON_REQ_USE="xml(+)"
 VALA_USE_DEPEND="vapigen"

[gentoo-commits] repo/gentoo:master commit in: sys-fs/cryfs/

2022-04-18 Thread Alexey Shvetsov

commit: 2964a3113b753554ccb6df04440bb40778e32d2c
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Mon Apr 18 18:55:43 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Mon Apr 18 18:56:14 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=2964a311

sys-fs/cryfs: enable py3.10

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sys-fs/cryfs/cryfs-0.10.3-r1.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sys-fs/cryfs/cryfs-0.10.3-r1.ebuild 
b/sys-fs/cryfs/cryfs-0.10.3-r1.ebuild
index 199c5a6badd1..f209908d30e4 100644
--- a/sys-fs/cryfs/cryfs-0.10.3-r1.ebuild
+++ b/sys-fs/cryfs/cryfs-0.10.3-r1.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
 
-PYTHON_COMPAT=( python3_{7..9} )
+PYTHON_COMPAT=( python3_{7..10} )
 inherit cmake flag-o-matic linux-info python-any-r1
 
 if [[ ${PV} ==  ]] ; then

[gentoo-commits] repo/gentoo:master commit in: dev-python/wxpython/

2022-04-18 Thread Alexey Shvetsov

commit: f6cb35e73272f2a84c2f67073de1f9193426e832
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Mon Apr 18 17:37:54 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Mon Apr 18 17:39:27 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f6cb35e7

dev-python/wxpython: enable py3.10

Signed-off-by: Alexey Shvetsov  gentoo.org>

 dev-python/wxpython/wxpython-4.0.7-r1.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/dev-python/wxpython/wxpython-4.0.7-r1.ebuild 
b/dev-python/wxpython/wxpython-4.0.7-r1.ebuild
index cf5ea393f6b4..701e3339e6bb 100644
--- a/dev-python/wxpython/wxpython-4.0.7-r1.ebuild
+++ b/dev-python/wxpython/wxpython-4.0.7-r1.ebuild
@@ -1,8 +1,8 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
-PYTHON_COMPAT=( python3_{8,9} )
+PYTHON_COMPAT=( python3_{8..10} )
 WX_GTK_VER="3.0-gtk3"
 
 DISTUTILS_IN_SOURCE_BUILD="1"

[gentoo-commits] repo/gentoo:master commit in: sci-electronics/kicad/

2022-04-18 Thread Alexey Shvetsov

commit: 08f51e7cbfbf995eed68365add3b4225079f5c80
Author: Alexey Shvetsov  gentoo  org>
AuthorDate: Mon Apr 18 17:38:58 2022 +
Commit:     Alexey Shvetsov  gentoo  org>
CommitDate: Mon Apr 18 17:39:28 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=08f51e7c

sci-electronics/kicad: enable py3.10

Signed-off-by: Alexey Shvetsov  gentoo.org>

 sci-electronics/kicad/kicad-6.0.4.ebuild | 2 +-
 sci-electronics/kicad/kicad-.ebuild  | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-electronics/kicad/kicad-6.0.4.ebuild 
b/sci-electronics/kicad/kicad-6.0.4.ebuild
index 2d3156fe68e9..37b4352cf709 100644
--- a/sci-electronics/kicad/kicad-6.0.4.ebuild
+++ b/sci-electronics/kicad/kicad-6.0.4.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=8
 
-PYTHON_COMPAT=( python3_{8,9} )
+PYTHON_COMPAT=( python3_{8..10} )
 WX_GTK_VER="3.0-gtk3"
 
 inherit check-reqs cmake optfeature python-single-r1 toolchain-funcs wxwidgets 
xdg-utils

diff --git a/sci-electronics/kicad/kicad-.ebuild 
b/sci-electronics/kicad/kicad-.ebuild
index 9ca55665856a..1e6d93af9eae 100644
--- a/sci-electronics/kicad/kicad-.ebuild
+++ b/sci-electronics/kicad/kicad-.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=8
 
-PYTHON_COMPAT=( python3_{8,9} )
+PYTHON_COMPAT=( python3_{8..9} )
 WX_GTK_VER="3.0-gtk3"
 
 inherit check-reqs cmake optfeature python-single-r1 toolchain-funcs wxwidgets 
xdg-utils

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