jlec 15/03/29 14:30:37 Modified: fasttree-2.1.7.ebuild ChangeLog Added: fasttree-2.1.8.ebuild Removed: fasttree-2.0.1.ebuild Log: Version BUmp; drop old (Portage version: 2.2.18/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
Revision Changes Path 1.3 sci-biology/fasttree/fasttree-2.1.7.ebuild file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/fasttree/fasttree-2.1.7.ebuild?rev=1.3&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/fasttree/fasttree-2.1.7.ebuild?rev=1.3&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/fasttree/fasttree-2.1.7.ebuild?r1=1.2&r2=1.3 Index: fasttree-2.1.7.ebuild =================================================================== RCS file: /var/cvsroot/gentoo-x86/sci-biology/fasttree/fasttree-2.1.7.ebuild,v retrieving revision 1.2 retrieving revision 1.3 diff -u -r1.2 -r1.3 --- fasttree-2.1.7.ebuild 29 Jan 2015 21:21:10 -0000 1.2 +++ fasttree-2.1.7.ebuild 29 Mar 2015 14:30:36 -0000 1.3 @@ -1,6 +1,6 @@ # Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/fasttree/fasttree-2.1.7.ebuild,v 1.2 2015/01/29 21:21:10 mgorny Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/fasttree/fasttree-2.1.7.ebuild,v 1.3 2015/03/29 14:30:36 jlec Exp $ EAPI=5 @@ -23,6 +23,8 @@ DOCS=( README ) +PATCHES=( "${FILESDIR}"/${P}-format-security.patch ) + src_unpack() { mkdir "${S}" || die cd "${S}" || die 1.6 sci-biology/fasttree/ChangeLog file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/fasttree/ChangeLog?rev=1.6&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/fasttree/ChangeLog?rev=1.6&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/fasttree/ChangeLog?r1=1.5&r2=1.6 Index: ChangeLog =================================================================== RCS file: /var/cvsroot/gentoo-x86/sci-biology/fasttree/ChangeLog,v retrieving revision 1.5 retrieving revision 1.6 diff -u -r1.5 -r1.6 --- ChangeLog 29 Jan 2015 21:21:10 -0000 1.5 +++ ChangeLog 29 Mar 2015 14:30:36 -0000 1.6 @@ -1,6 +1,14 @@ # ChangeLog for sci-biology/fasttree # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/fasttree/ChangeLog,v 1.5 2015/01/29 21:21:10 mgorny Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/fasttree/ChangeLog,v 1.6 2015/03/29 14:30:36 jlec Exp $ + +*fasttree-2.1.8 (29 Mar 2015) + + 29 Mar 2015; Justin Lecher <j...@gentoo.org> +fasttree-2.1.8.ebuild, + +files/fasttree-2.1.7-format-security.patch, + +files/fasttree-2.1.8-format-security.patch, -fasttree-2.0.1.ebuild, + -files/fasttree-2.0.1-asneeded.patch, fasttree-2.1.7.ebuild: + Version BUmp; drop old 29 Jan 2015; Michał Górny <mgo...@gentoo.org> fasttree-2.1.7.ebuild: Switch to CPU_FLAGS_X86. 1.1 sci-biology/fasttree/fasttree-2.1.8.ebuild file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/fasttree/fasttree-2.1.8.ebuild?rev=1.1&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/fasttree/fasttree-2.1.8.ebuild?rev=1.1&content-type=text/plain Index: fasttree-2.1.8.ebuild =================================================================== # Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/fasttree/fasttree-2.1.8.ebuild,v 1.1 2015/03/29 14:30:36 jlec Exp $ EAPI=5 inherit cmake-utils DESCRIPTION="Fast inference of approximately-maximum-likelihood phylogenetic trees" HOMEPAGE="http://www.microbesonline.org/fasttree/"; SRC_URI=" http://www.microbesonline.org/fasttree/FastTree-${PV}.c http://www.microbesonline.org/fasttree/FastTreeUPGMA.c -> FastTreeUPGMA-${PV}.c http://www.microbesonline.org/fasttree/MOTreeComparison.tar.gz -> MOTreeComparison-${PV}.tar.gz " LICENSE="GPL-2" SLOT="0" KEYWORDS="~amd64 ~x86" IUSE="double-precision openmp cpu_flags_x86_sse3" REQUIRED_USE="?? ( double-precision cpu_flags_x86_sse3 )" DOCS=( README ) PATCHES=( "${FILESDIR}"/${P}-format-security.patch ) src_unpack() { mkdir "${S}" || die cd "${S}" || die unpack ${A} cp "${DISTDIR}"/{FastTreeUPGMA-${PV}.c,FastTree-${PV}.c} . || die } src_prepare() { cp "${FILESDIR}"/CMakeLists.txt . || die cmake-utils_src_prepare } src_configure() { local mycmakeargs=( -DVERSION="${PV}" $(cmake-utils_use_has cpu_flags_x86_sse3 sse3) $(cmake-utils_use_use openmp) $(cmake-utils_use_use double-precision double) ) cmake-utils_src_configure }
