jlec 15/03/29 14:48:58 Modified: ChangeLog Added: mafft-7.215.ebuild Log: Version BUmp; drop obsolete patch (Portage version: 2.2.18/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
Revision Changes Path 1.21 sci-biology/mafft/ChangeLog file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mafft/ChangeLog?rev=1.21&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mafft/ChangeLog?rev=1.21&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mafft/ChangeLog?r1=1.20&r2=1.21 Index: ChangeLog =================================================================== RCS file: /var/cvsroot/gentoo-x86/sci-biology/mafft/ChangeLog,v retrieving revision 1.20 retrieving revision 1.21 diff -u -r1.20 -r1.21 --- ChangeLog 19 Jul 2013 09:44:31 -0000 1.20 +++ ChangeLog 29 Mar 2015 14:48:58 -0000 1.21 @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/mafft -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/mafft/ChangeLog,v 1.20 2013/07/19 09:44:31 jlec Exp $ +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mafft/ChangeLog,v 1.21 2015/03/29 14:48:58 jlec Exp $ + +*mafft-7.215 (29 Mar 2015) + + 29 Mar 2015; Justin Lecher <j...@gentoo.org> +mafft-7.215.ebuild, + -files/mafft-6.240-mktemp.patch: + Version BUmp; drop obsolete patch 19 Jul 2013; Justin Lecher <j...@gentoo.org> mafft-7.050.ebuild: Keyword for ~-linux @@ -103,4 +109,3 @@ 21 Oct 2006; Donnie Berkholz <dberkh...@gentoo.org>; +metadata.xml, +mafft-5.861.ebuild: New package: Multiple sequence alignments using a variety of algorithms. - 1.1 sci-biology/mafft/mafft-7.215.ebuild file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mafft/mafft-7.215.ebuild?rev=1.1&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mafft/mafft-7.215.ebuild?rev=1.1&content-type=text/plain Index: mafft-7.215.ebuild =================================================================== # Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/mafft/mafft-7.215.ebuild,v 1.1 2015/03/29 14:48:58 jlec Exp $ EAPI=5 inherit eutils flag-o-matic multilib toolchain-funcs EXTENSIONS="-without-extensions" DESCRIPTION="Multiple sequence alignments using a variety of algorithms" HOMEPAGE="http://mafft.cbrc.jp/alignment/software/index.html"; SRC_URI="http://mafft.cbrc.jp/alignment/software/${P}${EXTENSIONS}-src.tgz"; LICENSE="BSD" SLOT="0" KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos" IUSE="threads" S="${WORKDIR}"/${P}${EXTENSIONS} src_prepare() { # epatch "${FILESDIR}"/${PN}-7.037-respect.patch use threads && append-cppflags -Denablemultithread # sed "s:GENTOOLIBDIR:$(get_libdir):g" -i core/Makefile || die sed -i -e "s/(PREFIX)\/man/(PREFIX)\/share\/man/" "${S}"/core/Makefile || die "sed failed" sed \ -e 's:$(LDFLAGS)::g' \ -e 's:$(CC) -o $@:$(CC) $(LDFLAGS) -o $@:g' \ -e 's:$(CC) -shared -o $@:$(CC) $(LDFLAGS) -shared -o $@:g' \ -e '/INSTALL/s: -s : :g' \ -i core/Makefile || die } src_compile() { cd core || die emake \ $(usex threads ENABLE_MULTITHREAD="-Denablemultithread" ENABLE_MULTITHREAD="") \ PREFIX="${EPREFIX}"/usr \ CC="$(tc-getCC)" \ CFLAGS="${CFLAGS} -Wno-unused-result" } src_test() { export MAFFT_BINARIES="${S}"/core cd test || die bash ../core/mafft sample > test.fftns2 || die bash ../core/mafft --maxiterate 100 sample > test.fftnsi || die bash ../core/mafft --globalpair sample > test.gins1 || die bash ../core/mafft --globalpair --maxiterate 100 sample > test.ginsi || die bash ../core/mafft --localpair sample > test.lins1 || die bash ../core/mafft --localpair --maxiterate 100 sample > test.linsi || die diff test.fftns2 sample.fftns2 || die diff test.fftnsi sample.fftnsi || die diff test.gins1 sample.gins1 || die diff test.ginsi sample.ginsi || die diff test.lins1 sample.lins1 || die } src_install() { dodoc readme cd core || die emake PREFIX="${ED}usr" install }
