[gentoo-commits] gentoo-x86 commit in sci-chemistry/tm-align: tm-align-20140601.ebuild ChangeLog

[Pacho Ramos (pacho)]

pacho   15/05/15 11:19:56

  Modified: tm-align-20140601.ebuild ChangeLog
  Log:
  ppc stable wrt bug #549332
  
  (Portage version: 2.2.18/cvs/Linux x86_64, RepoMan options: 
--include-arches="ppc", signed Manifest commit with key A188FBD4)

Revision  ChangesPath
1.4  sci-chemistry/tm-align/tm-align-20140601.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tm-align/tm-align-20140601.ebuild?rev=1.4&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tm-align/tm-align-20140601.ebuild?rev=1.4&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tm-align/tm-align-20140601.ebuild?r1=1.3&r2=1.4

Index: tm-align-20140601.ebuild
===
RCS file: 
/var/cvsroot/gentoo-x86/sci-chemistry/tm-align/tm-align-20140601.ebuild,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- tm-align-20140601.ebuild13 May 2015 09:30:49 -  1.3
+++ tm-align-20140601.ebuild15 May 2015 11:19:56 -  1.4
@@ -1,6 +1,6 @@
 # Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: 
/var/cvsroot/gentoo-x86/sci-chemistry/tm-align/tm-align-20140601.ebuild,v 1.3 
2015/05/13 09:30:49 ago Exp $
+# $Header: 
/var/cvsroot/gentoo-x86/sci-chemistry/tm-align/tm-align-20140601.ebuild,v 1.4 
2015/05/15 11:19:56 pacho Exp $
 
 EAPI=5
 
@@ -12,7 +12,7 @@
 
 LICENSE="tm-align"
 SLOT="0"
-KEYWORDS="amd64 ~ppc ~ppc64 x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 ppc ~ppc64 x86 ~amd64-linux ~x86-linux"
 IUSE="static custom-cflags"
 
 S="${WORKDIR}"



1.16 sci-chemistry/tm-align/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tm-align/ChangeLog?rev=1.16&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tm-align/ChangeLog?rev=1.16&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tm-align/ChangeLog?r1=1.15&r2=1.16

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/ChangeLog,v
retrieving revision 1.15
retrieving revision 1.16
diff -u -r1.15 -r1.16
--- ChangeLog   13 May 2015 09:30:49 -  1.15
+++ ChangeLog   15 May 2015 11:19:56 -  1.16
@@ -1,6 +1,9 @@
 # ChangeLog for sci-chemistry/tm-align
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/ChangeLog,v 1.15 
2015/05/13 09:30:49 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/ChangeLog,v 1.16 
2015/05/15 11:19:56 pacho Exp $
+
+  15 May 2015; Pacho Ramos  tm-align-20140601.ebuild:
+  ppc stable wrt bug #549332
 
   13 May 2015; Agostino Sarubbo  tm-align-20140601.ebuild:
   Stable for x86, wrt bug #549332

[gentoo-commits] gentoo-x86 commit in sci-chemistry/tm-align: tm-align-20140601.ebuild ChangeLog

[Agostino Sarubbo (ago)]

ago 15/05/13 09:30:49

  Modified: tm-align-20140601.ebuild ChangeLog
  Log:
  Stable for x86, wrt bug #549332
  
  (Portage version: 2.2.18/cvs/Linux x86_64, RepoMan options: 
--include-arches="x86", signed Manifest commit with key 7194459F)

Revision  ChangesPath
1.3  sci-chemistry/tm-align/tm-align-20140601.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tm-align/tm-align-20140601.ebuild?rev=1.3&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tm-align/tm-align-20140601.ebuild?rev=1.3&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tm-align/tm-align-20140601.ebuild?r1=1.2&r2=1.3

Index: tm-align-20140601.ebuild
===
RCS file: 
/var/cvsroot/gentoo-x86/sci-chemistry/tm-align/tm-align-20140601.ebuild,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- tm-align-20140601.ebuild13 May 2015 08:02:29 -  1.2
+++ tm-align-20140601.ebuild13 May 2015 09:30:49 -  1.3
@@ -1,6 +1,6 @@
 # Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: 
/var/cvsroot/gentoo-x86/sci-chemistry/tm-align/tm-align-20140601.ebuild,v 1.2 
2015/05/13 08:02:29 ago Exp $
+# $Header: 
/var/cvsroot/gentoo-x86/sci-chemistry/tm-align/tm-align-20140601.ebuild,v 1.3 
2015/05/13 09:30:49 ago Exp $
 
 EAPI=5
 
@@ -12,7 +12,7 @@
 
 LICENSE="tm-align"
 SLOT="0"
-KEYWORDS="amd64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 ~ppc ~ppc64 x86 ~amd64-linux ~x86-linux"
 IUSE="static custom-cflags"
 
 S="${WORKDIR}"



1.15 sci-chemistry/tm-align/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tm-align/ChangeLog?rev=1.15&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tm-align/ChangeLog?rev=1.15&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tm-align/ChangeLog?r1=1.14&r2=1.15

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/ChangeLog,v
retrieving revision 1.14
retrieving revision 1.15
diff -u -r1.14 -r1.15
--- ChangeLog   13 May 2015 08:02:29 -  1.14
+++ ChangeLog   13 May 2015 09:30:49 -  1.15
@@ -1,6 +1,9 @@
 # ChangeLog for sci-chemistry/tm-align
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/ChangeLog,v 1.14 
2015/05/13 08:02:29 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/ChangeLog,v 1.15 
2015/05/13 09:30:49 ago Exp $
+
+  13 May 2015; Agostino Sarubbo  tm-align-20140601.ebuild:
+  Stable for x86, wrt bug #549332
 
   13 May 2015; Agostino Sarubbo  tm-align-20140601.ebuild:
   Stable for amd64, wrt bug #549332

[gentoo-commits] gentoo-x86 commit in sci-chemistry/tm-align: tm-align-20140601.ebuild ChangeLog

[Agostino Sarubbo (ago)]

ago 15/05/13 08:02:29

  Modified: tm-align-20140601.ebuild ChangeLog
  Log:
  Stable for amd64, wrt bug #549332
  
  (Portage version: 2.2.18/cvs/Linux x86_64, RepoMan options: 
--include-arches="amd64", signed Manifest commit with key 7194459F)

Revision  ChangesPath
1.2  sci-chemistry/tm-align/tm-align-20140601.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tm-align/tm-align-20140601.ebuild?rev=1.2&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tm-align/tm-align-20140601.ebuild?rev=1.2&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tm-align/tm-align-20140601.ebuild?r1=1.1&r2=1.2

Index: tm-align-20140601.ebuild
===
RCS file: 
/var/cvsroot/gentoo-x86/sci-chemistry/tm-align/tm-align-20140601.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- tm-align-20140601.ebuild29 Mar 2015 13:15:56 -  1.1
+++ tm-align-20140601.ebuild13 May 2015 08:02:29 -  1.2
@@ -1,6 +1,6 @@
 # Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: 
/var/cvsroot/gentoo-x86/sci-chemistry/tm-align/tm-align-20140601.ebuild,v 1.1 
2015/03/29 13:15:56 jlec Exp $
+# $Header: 
/var/cvsroot/gentoo-x86/sci-chemistry/tm-align/tm-align-20140601.ebuild,v 1.2 
2015/05/13 08:02:29 ago Exp $
 
 EAPI=5
 
@@ -12,7 +12,7 @@
 
 LICENSE="tm-align"
 SLOT="0"
-KEYWORDS="~amd64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux"
 IUSE="static custom-cflags"
 
 S="${WORKDIR}"



1.14 sci-chemistry/tm-align/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tm-align/ChangeLog?rev=1.14&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tm-align/ChangeLog?rev=1.14&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tm-align/ChangeLog?r1=1.13&r2=1.14

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/ChangeLog,v
retrieving revision 1.13
retrieving revision 1.14
diff -u -r1.13 -r1.14
--- ChangeLog   13 May 2015 06:57:34 -  1.13
+++ ChangeLog   13 May 2015 08:02:29 -  1.14
@@ -1,6 +1,9 @@
 # ChangeLog for sci-chemistry/tm-align
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/ChangeLog,v 1.13 
2015/05/13 06:57:34 jmorgan Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/ChangeLog,v 1.14 
2015/05/13 08:02:29 ago Exp $
+
+  13 May 2015; Agostino Sarubbo  tm-align-20140601.ebuild:
+  Stable for amd64, wrt bug #549332
 
   13 May 2015; Jack Morgan  tm-align-20130511.ebuild:
   ppc64 stable wrt bug #544934

[gentoo-commits] gentoo-x86 commit in sci-chemistry/tm-align: tm-align-20140601.ebuild ChangeLog tm-align-20120124.ebuild tm-align-20120707.ebuild

[Justin Lecher (jlec)]

jlec15/03/29 13:15:57

  Modified: ChangeLog
  Added:tm-align-20140601.ebuild
  Removed:  tm-align-20120124.ebuild tm-align-20120707.ebuild
  Log:
  Version Bump; drop old
  
  (Portage version: 2.2.18/cvs/Linux x86_64, signed Manifest commit with key 
B9D4F231BD1558AB!)

Revision  ChangesPath
1.8  sci-chemistry/tm-align/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tm-align/ChangeLog?rev=1.8&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tm-align/ChangeLog?rev=1.8&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tm-align/ChangeLog?r1=1.7&r2=1.8

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/ChangeLog,v
retrieving revision 1.7
retrieving revision 1.8
diff -u -r1.7 -r1.8
--- ChangeLog   9 Feb 2015 12:49:24 -   1.7
+++ ChangeLog   29 Mar 2015 13:15:56 -  1.8
@@ -1,6 +1,12 @@
 # ChangeLog for sci-chemistry/tm-align
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/ChangeLog,v 1.7 
2015/02/09 12:49:24 blueness Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/ChangeLog,v 1.8 
2015/03/29 13:15:56 jlec Exp $
+
+*tm-align-20140601 (29 Mar 2015)
+
+  29 Mar 2015; Justin Lecher  +tm-align-20140601.ebuild,
+  -tm-align-20120124.ebuild, -tm-align-20120707.ebuild:
+  Version Bump; drop old
 
   09 Feb 2015; Anthony G. Basile  
tm-align-20120707.ebuild,
   tm-align-20130511.ebuild:



1.1  sci-chemistry/tm-align/tm-align-20140601.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tm-align/tm-align-20140601.ebuild?rev=1.1&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/tm-align/tm-align-20140601.ebuild?rev=1.1&content-type=text/plain

Index: tm-align-20140601.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: 
/var/cvsroot/gentoo-x86/sci-chemistry/tm-align/tm-align-20140601.ebuild,v 1.1 
2015/03/29 13:15:56 jlec Exp $

EAPI=5

inherit cmake-utils flag-o-matic fortran-2

DESCRIPTION="Quick & Accurate Structural Alignment"
HOMEPAGE="http://zhanglab.ccmb.med.umich.edu/TM-align/";
SRC_URI="http://zhanglab.ccmb.med.umich.edu/TM-align/TMtools${PV}.tar.gz";

LICENSE="tm-align"
SLOT="0"
KEYWORDS="~amd64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux"
IUSE="static custom-cflags"

S="${WORKDIR}"

src_prepare() {
cp "${FILESDIR}"/CMakeLists.txt . || die
use static && append-fflags -static && append-ldflags -static
# recommended by upstream
use custom-cflags || replace-flags -O* -O3 && append-fflags -ffast-math
}