[gentoo-commits] proj/sci:jlec/scilab commit in: sci-biology/pilon-bin/
commit: 532f43c453327e607778d2cefaf43d45e3d04de5 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Sun Jan 21 21:46:18 2018 + Commit: Justin Lecher gentoo org> CommitDate: Sun Jan 21 21:46:18 2018 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=532f43c4 sci-biology/pilon-bin: Drop the scala dependency for binary build Package-Manager: Portage-2.3.19, Repoman-2.3.6 sci-biology/pilon-bin/pilon-bin-1.22.ebuild | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/sci-biology/pilon-bin/pilon-bin-1.22.ebuild b/sci-biology/pilon-bin/pilon-bin-1.22.ebuild index 60019723b..feeafa365 100644 --- a/sci-biology/pilon-bin/pilon-bin-1.22.ebuild +++ b/sci-biology/pilon-bin/pilon-bin-1.22.ebuild @@ -16,8 +16,7 @@ SLOT="0" KEYWORDS="~amd64" IUSE="" -DEPEND="dev-java/sbt - >=virtual/jdk-1.7:*" +DEPEND=">=virtual/jdk-1.7:*" RDEPEND="${DEPEND} >=virtual/jre-1.7:* >=dev-java/htsjdk-1.130"
[gentoo-commits] proj/sci:jlec/scilab commit in: sci-biology/pilon-bin/
commit: e4f568402bfead6e32904c59ce41578b7617b851 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Sat Jan 20 21:35:57 2018 + Commit: Justin Lecher gentoo org> CommitDate: Sat Jan 20 21:35:57 2018 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=e4f56840 sci-biology/pilon-bin: new, albeit binary package The sources are in scala language, btw. Package-Manager: Portage-2.3.19, Repoman-2.3.6 sci-biology/pilon-bin/metadata.xml | 12 sci-biology/pilon-bin/pilon-bin-1.22.ebuild | 30 + 2 files changed, 42 insertions(+) diff --git a/sci-biology/pilon-bin/metadata.xml b/sci-biology/pilon-bin/metadata.xml new file mode 100644 index 0..138cb7705 --- /dev/null +++ b/sci-biology/pilon-bin/metadata.xml @@ -0,0 +1,12 @@ + +http://www.gentoo.org/dtd/metadata.dtd";> + + + mmokr...@fold.natur.cuni.cz + Martin Mokrejs + + + sci-biol...@gentoo.org + Gentoo Biology Project + + diff --git a/sci-biology/pilon-bin/pilon-bin-1.22.ebuild b/sci-biology/pilon-bin/pilon-bin-1.22.ebuild new file mode 100644 index 0..2284e6418 --- /dev/null +++ b/sci-biology/pilon-bin/pilon-bin-1.22.ebuild @@ -0,0 +1,30 @@ +# Copyright 1999-2018 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +inherit java-pkg-2 + +DESCRIPTION="Fix assembled reference using BAM-aligned reads, call SNPs" +HOMEPAGE="https://github.com/broadinstitute/pilon + https://github.com/broadinstitute/pilon/wiki"; +SRC_URI="https://github.com/broadinstitute/pilon/releases/download/v${PV}/pilon-${PV}.jar"; + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="dev-java/sbt + >=virtual/jdk-1.5:*" +RDEPEND="${DEPEND} + >=virtual/jre-1.5:* + >=dev-java/htsjdk-1.130" + +S="${WORKDIR}" + +src_install(){ + cp -p "${DISTDIR}"/pilon-${PV}.jar . || die + java-pkg_dojar pilon-${PV}.jar +}
[gentoo-commits] proj/sci:jlec/scilab commit in: sci-biology/pilon-bin/
commit: 4f5a54734cb153fda873729addfb793bb1e0e6f6 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Sun Jan 21 20:47:11 2018 + Commit: Justin Lecher gentoo org> CommitDate: Sun Jan 21 20:47:11 2018 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=4f5a5473 sci-biology/pilon-bin: Fix java runtime version Package-Manager: Portage-2.3.19, Repoman-2.3.6 sci-biology/pilon-bin/pilon-bin-1.22.ebuild | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/sci-biology/pilon-bin/pilon-bin-1.22.ebuild b/sci-biology/pilon-bin/pilon-bin-1.22.ebuild index 2284e6418..60019723b 100644 --- a/sci-biology/pilon-bin/pilon-bin-1.22.ebuild +++ b/sci-biology/pilon-bin/pilon-bin-1.22.ebuild @@ -17,9 +17,9 @@ KEYWORDS="~amd64" IUSE="" DEPEND="dev-java/sbt - >=virtual/jdk-1.5:*" + >=virtual/jdk-1.7:*" RDEPEND="${DEPEND} - >=virtual/jre-1.5:* + >=virtual/jre-1.7:* >=dev-java/htsjdk-1.130" S="${WORKDIR}"