[gentoo-commits] proj/sci:master commit in: sci-biology/Fastaq/
commit: cb58accf5ba16cf9c6847740da88a44b0b27eaaa Author: Horea Christian chymera eu> AuthorDate: Sat Jan 14 11:50:52 2023 + Commit: Horea Christian gmail com> CommitDate: Sat Jan 14 11:50:52 2023 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=cb58accf sci-biology/Fastaq: using PEP517 Signed-off-by: Horea Christian chymera.eu> sci-biology/Fastaq/Fastaq-3.17.0.ebuild | 1 + 1 file changed, 1 insertion(+) diff --git a/sci-biology/Fastaq/Fastaq-3.17.0.ebuild b/sci-biology/Fastaq/Fastaq-3.17.0.ebuild index 4edf7cb45..443fb3342 100644 --- a/sci-biology/Fastaq/Fastaq-3.17.0.ebuild +++ b/sci-biology/Fastaq/Fastaq-3.17.0.ebuild @@ -4,6 +4,7 @@ EAPI=8 PYTHON_COMPAT=( python3_{10..11} ) +DISTUTILS_USE_PEP517=setuptools inherit distutils-r1
[gentoo-commits] proj/sci:master commit in: sci-biology/Fastaq/
commit: 849f966b89371fd6d3b2428228452643f1469f91 Author: Horea Christian chymera eu> AuthorDate: Sat Jan 14 11:21:02 2023 + Commit: Horea Christian gmail com> CommitDate: Sat Jan 14 11:21:10 2023 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=849f966b sci-biology/Fastaq: update EAPI and PYTHON_COMPAT Signed-off-by: Horea Christian chymera.eu> sci-biology/Fastaq/Fastaq-3.17.0.ebuild | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/sci-biology/Fastaq/Fastaq-3.17.0.ebuild b/sci-biology/Fastaq/Fastaq-3.17.0.ebuild index 28ff526f6..e62cd5e8f 100644 --- a/sci-biology/Fastaq/Fastaq-3.17.0.ebuild +++ b/sci-biology/Fastaq/Fastaq-3.17.0.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2021 Gentoo Authors +# Copyright 1999-2023 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=7 +EAPI=8 -PYTHON_COMPAT=( python3_{7,8,9} ) +PYTHON_COMPAT=( python3_{10..11} ) inherit distutils-r1
[gentoo-commits] proj/sci:master commit in: sci-biology/Fastaq/
commit: 172812edacf51e665169bf46e083487be3f7e828 Author: Horea Christian chymera eu> AuthorDate: Sat Jan 14 11:48:32 2023 + Commit: Horea Christian gmail com> CommitDate: Sat Jan 14 11:48:32 2023 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=172812ed sci-biology/Fastaq: using pytest Signed-off-by: Horea Christian chymera.eu> sci-biology/Fastaq/Fastaq-3.17.0.ebuild | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/sci-biology/Fastaq/Fastaq-3.17.0.ebuild b/sci-biology/Fastaq/Fastaq-3.17.0.ebuild index e62cd5e8f..4edf7cb45 100644 --- a/sci-biology/Fastaq/Fastaq-3.17.0.ebuild +++ b/sci-biology/Fastaq/Fastaq-3.17.0.ebuild @@ -15,4 +15,6 @@ LICENSE="GPL-3" SLOT="0" KEYWORDS="~amd64" -distutils_enable_tests nose +distutils_enable_tests pytest +# Nominally upstream still uses nose, though it does not encumber us, and tests pass: +# https://github.com/sanger-pathogens/Fastaq/issues/84
[gentoo-commits] proj/sci:master commit in: sci-biology/Fastaq/
commit: de0b0d0f14a82ff95dbb339a60f5a532ea2014fa Author: Andrew Ammerlaan riseup net> AuthorDate: Sat Feb 13 10:41:10 2021 + Commit: Andrew Ammerlaan riseup net> CommitDate: Sat Feb 13 10:41:10 2021 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=de0b0d0f sci-biology/Fastaq: add version 3.17.0, add tests Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan riseup.net> .../Fastaq/{Fastaq-.ebuild => Fastaq-3.17.0.ebuild}| 14 ++ 1 file changed, 6 insertions(+), 8 deletions(-) diff --git a/sci-biology/Fastaq/Fastaq-.ebuild b/sci-biology/Fastaq/Fastaq-3.17.0.ebuild similarity index 57% rename from sci-biology/Fastaq/Fastaq-.ebuild rename to sci-biology/Fastaq/Fastaq-3.17.0.ebuild index 5f932f511..28ff526f6 100644 --- a/sci-biology/Fastaq/Fastaq-.ebuild +++ b/sci-biology/Fastaq/Fastaq-3.17.0.ebuild @@ -1,20 +1,18 @@ # Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=6 +EAPI=7 -PYTHON_COMPAT=( python3_7 ) +PYTHON_COMPAT=( python3_{7,8,9} ) -inherit distutils-r1 git-r3 +inherit distutils-r1 DESCRIPTION="Manipulate FASTA/Q, GFF3, EMBL, GBK files with API for developers" HOMEPAGE="https://github.com/sanger-pathogens/Fastaq; -EGIT_REPO_URI="https://github.com/sanger-pathogens/Fastaq.git; +SRC_URI="https://github.com/sanger-pathogens/Fastaq/archive/v${PV}.tar.gz -> ${P}.tar.gz" LICENSE="GPL-3" SLOT="0" -KEYWORDS="" -IUSE="" +KEYWORDS="~amd64" -DEPEND="" -RDEPEND="${DEPEND}" +distutils_enable_tests nose
[gentoo-commits] proj/sci:master commit in: sci-biology/Fastaq/
commit: 0a34d3de9c792858f7c57d6861391c10247d2e8b Author: Sam James gentoo org> AuthorDate: Fri Feb 12 21:41:36 2021 + Commit: Sam James gentoo org> CommitDate: Fri Feb 12 21:41:36 2021 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=0a34d3de sci-biology/Fastaq: drop obsolete python_targets_* Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Sam James gentoo.org> sci-biology/Fastaq/Fastaq-.ebuild | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/sci-biology/Fastaq/Fastaq-.ebuild b/sci-biology/Fastaq/Fastaq-.ebuild index 3a99df177..5f932f511 100644 --- a/sci-biology/Fastaq/Fastaq-.ebuild +++ b/sci-biology/Fastaq/Fastaq-.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2018 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=6 -PYTHON_COMPAT=( python3_3 python3_4 python3_5 python3_6 python3_7 ) +PYTHON_COMPAT=( python3_7 ) inherit distutils-r1 git-r3
[gentoo-commits] proj/sci:master commit in: sci-biology/Fastaq/
commit: 559bb60db84e5ef4a7b912b2fd7dba135d57b303 Author: Martin Mokrejs fold natur cuni cz> AuthorDate: Mon Oct 29 14:23:35 2018 + Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Mon Oct 29 14:23:35 2018 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=559bb60d sci-biology/Fastaq: add python 3_{6,7} Package-Manager: Portage-2.3.51, Repoman-2.3.10 sci-biology/Fastaq/Fastaq-.ebuild | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/sci-biology/Fastaq/Fastaq-.ebuild b/sci-biology/Fastaq/Fastaq-.ebuild index 3544716c7..3a99df177 100644 --- a/sci-biology/Fastaq/Fastaq-.ebuild +++ b/sci-biology/Fastaq/Fastaq-.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2016 Gentoo Foundation +# Copyright 1999-2018 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 EAPI=6 -PYTHON_COMPAT=( python3_3 python3_4 python3_5 ) +PYTHON_COMPAT=( python3_3 python3_4 python3_5 python3_6 python3_7 ) inherit distutils-r1 git-r3
[gentoo-commits] proj/sci:master commit in: sci-biology/Fastaq/
commit: 913b84c00d810e7f8f1ca7eb7e4d049ac8903493 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Fri Sep 23 17:30:57 2016 + Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Fri Sep 23 17:30:57 2016 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=913b84c0 sci-biology/Fastaq: add python_3_5, improve DESCRIPTION line Package-Manager: portage-2.3.0 sci-biology/Fastaq/Fastaq-.ebuild | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/sci-biology/Fastaq/Fastaq-.ebuild b/sci-biology/Fastaq/Fastaq-.ebuild index 9acd60e..f931027 100644 --- a/sci-biology/Fastaq/Fastaq-.ebuild +++ b/sci-biology/Fastaq/Fastaq-.ebuild @@ -4,11 +4,11 @@ EAPI=6 -PYTHON_COMPAT=( python3_3 python3_4 ) +PYTHON_COMPAT=( python3_3 python3_4 python3_5 ) inherit distutils-r1 git-r3 -DESCRIPTION="Python3 script to manipulate FASTA/Q files plus API for developers" +DESCRIPTION="Manipulate FASTA/Q, GFF3, EMBL, GBK files with API for developers" HOMEPAGE="https://github.com/sanger-pathogens/Fastaq; EGIT_REPO_URI="https://github.com/sanger-pathogens/Fastaq.git;
[gentoo-commits] proj/sci:master commit in: sci-biology/Fastaq/
commit: ec37fad877f9e8a8d529a968629aaba44cb0e774 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Sun Apr 10 13:17:21 2016 + Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Sun Apr 10 13:17:21 2016 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=ec37fad8 sci-biology/Fastaq: new package Package-Manager: portage-2.2.28 sci-biology/Fastaq/Fastaq-.ebuild | 21 + sci-biology/Fastaq/metadata.xml | 12 2 files changed, 33 insertions(+) diff --git a/sci-biology/Fastaq/Fastaq-.ebuild b/sci-biology/Fastaq/Fastaq-.ebuild new file mode 100644 index 000..9acd60e --- /dev/null +++ b/sci-biology/Fastaq/Fastaq-.ebuild @@ -0,0 +1,21 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +PYTHON_COMPAT=( python3_3 python3_4 ) + +inherit distutils-r1 git-r3 + +DESCRIPTION="Python3 script to manipulate FASTA/Q files plus API for developers" +HOMEPAGE="https://github.com/sanger-pathogens/Fastaq; +EGIT_REPO_URI="https://github.com/sanger-pathogens/Fastaq.git; + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND}" diff --git a/sci-biology/Fastaq/metadata.xml b/sci-biology/Fastaq/metadata.xml new file mode 100644 index 000..f68a1b6 --- /dev/null +++ b/sci-biology/Fastaq/metadata.xml @@ -0,0 +1,12 @@ + +http://www.gentoo.org/dtd/metadata.dtd;> + + +mmokr...@fold.natur.cuni.cz +Martin Mokrejs + + +sci-biol...@gentoo.org +Gentoo Biology Project + +