[gentoo-commits] proj/sci:master commit in: sci-libs/itk/files/, sci-libs/itk/
commit: 42b8aadc9ce1de416e55dba98c3ba02a0177366f
Author: Horea Christian chymera eu>
AuthorDate: Thu Sep 15 07:02:53 2022 +
Commit: Horea Christian gmail com>
CommitDate: Thu Sep 15 07:02:53 2022 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=42b8aadc
sci-libs/itk: add 5.1.0
Signed-off-by: Horea Christian chymera.eu>
sci-libs/itk/files/itk-5.1.0-downloads.patch | 20 +++
sci-libs/itk/files/itk-5.1.0-include_limits.patch | 10 ++
sci-libs/itk/files/tests.patch| 41 +
sci-libs/itk/itk-5.1.0.ebuild | 191 ++
4 files changed, 262 insertions(+)
diff --git a/sci-libs/itk/files/itk-5.1.0-downloads.patch
b/sci-libs/itk/files/itk-5.1.0-downloads.patch
new file mode 100644
index 0..34fdb76d1
--- /dev/null
+++ b/sci-libs/itk/files/itk-5.1.0-downloads.patch
@@ -0,0 +1,20 @@
+--- a/CMake/ITKDownloadSetup.cmake 2020-07-30 19:03:10.330325423 -0400
b/CMake/ITKDownloadSetup.cmake 2020-07-30 19:03:10.330325423 -0400
+@@ -11,7 +11,7 @@
+
+ macro(itk_download_attempt_check _name)
+ if(ITK_FORBID_DOWNLOADS)
+-message(SEND_ERROR "Attempted to download ${_name} when
ITK_FORBID_DOWNLOADS is ON")
++message(WARNING "Attempted to download ${_name} when ITK_FORBID_DOWNLOADS
is ON")
+ endif()
+ endmacro()
+
+--- a/Modules/Remote/GenericLabelInterpolator.remote.cmake 2020-04-25
14:30:53.0 -0400
b/Modules/Remote/GenericLabelInterpolator.remote.cmake 2020-04-25
14:30:53.0 -0400
+@@ -44,6 +44,4 @@
+ itk_fetch_module(GenericLabelInterpolator
+ "A generic interpolator for multi-label images."
+ MODULE_COMPLIANCE_LEVEL 2
+- GIT_REPOSITORY
${git_protocol}://github.com/InsightSoftwareConsortium/ITKGenericLabelInterpolator.git
+- GIT_TAG b95fe46c7f4fe8002af67c67e6fe4e1f087bf6b7
+ )
diff --git a/sci-libs/itk/files/itk-5.1.0-include_limits.patch
b/sci-libs/itk/files/itk-5.1.0-include_limits.patch
new file mode 100644
index 0..9a8fae820
--- /dev/null
+++ b/sci-libs/itk/files/itk-5.1.0-include_limits.patch
@@ -0,0 +1,10 @@
+---
a/Modules/ThirdParty/GDCM/src/gdcm/Source/MediaStorageAndFileFormat/gdcmImageChangePhotometricInterpretation.h
a/Modules/ThirdParty/GDCM/src/gdcm/Source/MediaStorageAndFileFormat/gdcmImageChangePhotometricInterpretation.h
+@@ -16,6 +16,7 @@
+
+ #include "gdcmImageToImageFilter.h"
+ #include "gdcmPhotometricInterpretation.h"
++#include
+
+ namespace gdcm
+ {
diff --git a/sci-libs/itk/files/tests.patch b/sci-libs/itk/files/tests.patch
new file mode 100644
index 0..c24714e4d
--- /dev/null
+++ b/sci-libs/itk/files/tests.patch
@@ -0,0 +1,41 @@
+Known to fail by upstream:
+https://github.com/InsightSoftwareConsortium/ITK/issues/1212#issuecomment-527998115
+
+--- a/Modules/Bridge/VtkGlue/test/CMakeLists.txt 2019-09-09
00:45:14.736032139 +0200
b/Modules/Bridge/VtkGlue/test/CMakeLists.txt 2019-09-09
00:49:42.183935497 +0200
+@@ -7,8 +7,6 @@
+ if(NOT VTK_RENDERING_BACKEND STREQUAL "None")
+ list(APPEND ITKVtkGlueTests
+ itkVtkMedianFilterTest.cxx
+-itkVtkConnectedComponentImageFilterTest.cxx
+-QuickViewTest.cxx
+ # ### runViewImage ###
+ # No test generated. Use it for view images (2D or 3D) with:
+ # ITKVtkGlueTestDriver runViewImage image_file
+@@ -40,26 +38,3 @@
+ NAME itkVTKImageToImageFilterTest
+ COMMAND ITKVtkGlueTestDriver
+ itkVTKImageToImageFilterTest)
+-
+-if(NOT VTK_RENDERING_BACKEND STREQUAL "None")
+- itk_add_test(
+-NAME itkVtkMedianImageFilterTest
+-COMMAND ITKVtkGlueTestDriver
+- itkVtkMedianFilterTest DATA{${ITK_DATA_ROOT}/Input/cthead1.png} 2)
+- set_property(TEST itkVtkMedianImageFilterTest APPEND PROPERTY LABELS
REQUIRES_DISPLAY)
+-
+- itk_add_test(
+-NAME QuickViewTest
+-COMMAND ITKVtkGlueTestDriver
+- --compare DATA{Baseline/QuickViewTest.png,:}
+- ${ITK_TEST_OUTPUT_DIR}/QuickViewTest0.png
+- --compareNumberOfPixelsTolerance 1500
+- QuickViewTest DATA{${ITK_DATA_ROOT}/Input/peppers.png}
${ITK_TEST_OUTPUT_DIR})
+- set_property(TEST QuickViewTest APPEND PROPERTY LABELS REQUIRES_DISPLAY)
+-
+- itk_add_test(
+-NAME itkVtkConnectedComponentImageFilterTest
+-COMMAND ITKVtkGlueTestDriver
+- itkVtkConnectedComponentImageFilterTest
DATA{${ITK_DATA_ROOT}/Input/cthead1.png})
+- set_property(TEST itkVtkConnectedComponentImageFilterTest APPEND PROPERTY
LABELS REQUIRES_DISPLAY)
+-endif()
diff --git a/sci-libs/itk/itk-5.1.0.ebuild b/sci-libs/itk/itk-5.1.0.ebuild
new file mode 100644
index 0..34d2c215d
--- /dev/null
+++ b/sci-libs/itk/itk-5.1.0.ebuild
@@ -0,0 +1,191 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{8..10} )
+
+inherit cmake python-single-r1
+
+MY_PN="InsightToolkit"
+MY_P="${MY_PN}-${PV}"
+GLI_HASH="a02cbeaf28cb3d28ac66b9ac651073530eb6ab78"
[gentoo-commits] proj/sci:master commit in: sci-libs/itk/files/, sci-libs/itk/
commit: 3b227d5588eaac724032273e19541ee81aa53034
Author: Horea Christian chymera eu>
AuthorDate: Mon Jan 10 00:38:53 2022 +
Commit: Horea Christian gmail com>
CommitDate: Mon Jan 10 00:38:53 2022 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=3b227d55
sci-libs/itk: fixed missing limits issue for newer GCC
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Horea Christian chymera.eu>
sci-libs/itk/files/itk-5.1.0-include_limits.patch | 10 ++
sci-libs/itk/itk-5.0.1.ebuild | 10 +-
sci-libs/itk/itk-5.1.0.ebuild | 11 ++-
3 files changed, 21 insertions(+), 10 deletions(-)
diff --git a/sci-libs/itk/files/itk-5.1.0-include_limits.patch
b/sci-libs/itk/files/itk-5.1.0-include_limits.patch
new file mode 100644
index 0..9a8fae820
--- /dev/null
+++ b/sci-libs/itk/files/itk-5.1.0-include_limits.patch
@@ -0,0 +1,10 @@
+---
a/Modules/ThirdParty/GDCM/src/gdcm/Source/MediaStorageAndFileFormat/gdcmImageChangePhotometricInterpretation.h
a/Modules/ThirdParty/GDCM/src/gdcm/Source/MediaStorageAndFileFormat/gdcmImageChangePhotometricInterpretation.h
+@@ -16,6 +16,7 @@
+
+ #include "gdcmImageToImageFilter.h"
+ #include "gdcmPhotometricInterpretation.h"
++#include
+
+ namespace gdcm
+ {
diff --git a/sci-libs/itk/itk-5.0.1.ebuild b/sci-libs/itk/itk-5.0.1.ebuild
index 9c8ce63eb..c0a74b27f 100644
--- a/sci-libs/itk/itk-5.0.1.ebuild
+++ b/sci-libs/itk/itk-5.0.1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
@@ -159,11 +159,11 @@ src_install() {
dodoc -r "${S}"/Examples/*
fi
- echo "ITK_DATA_ROOT=${EROOT}/usr/share/${PN}/data" > ${T}/40${PN}
- local ldpath="${EROOT}/usr/$(get_libdir)/InsightToolkit"
+ echo "ITK_DATA_ROOT=${EPREFIX}/usr/share/${PN}/data" > ${T}/40${PN}
+ local ldpath="${EPREFIX}/usr/$(get_libdir)/InsightToolkit"
if use python; then
- echo
"PYTHONPATH=${EROOT}/usr/$(get_libdir)/InsightToolkit/WrapITK/Python" >>
"${T}"/40${PN}
-
ldpath="${ldpath}:${EROOT}/usr/$(get_libdir)/InsightToolkit/WrapITK/lib"
+ echo
"PYTHONPATH=${EPREFIX}/usr/$(get_libdir)/InsightToolkit/WrapITK/Python" >>
"${T}"/40${PN}
+
ldpath="${ldpath}:${EPREFIX}/usr/$(get_libdir)/InsightToolkit/WrapITK/lib"
fi
echo "LDPATH=${ldpath}" >> "${T}"/40${PN}
doenvd "${T}"/40${PN}
diff --git a/sci-libs/itk/itk-5.1.0.ebuild b/sci-libs/itk/itk-5.1.0.ebuild
index d437d0298..8c9e48dba 100644
--- a/sci-libs/itk/itk-5.1.0.ebuild
+++ b/sci-libs/itk/itk-5.1.0.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
@@ -72,6 +72,7 @@ S="${WORKDIR}/${MY_P}"
PATCHES=(
"${FILESDIR}"/tests.patch
"${FILESDIR}"/${P}-downloads.patch
+ "${FILESDIR}"/${P}-include_limits.patch
)
pkg_pretend() {
@@ -171,11 +172,11 @@ src_install() {
dodoc -r "${S}"/Examples/*
fi
- echo "ITK_DATA_ROOT=${EROOT}/usr/share/${PN}/data" > ${T}/40${PN}
- local ldpath="${EROOT}/usr/$(get_libdir)/InsightToolkit"
+ echo "ITK_DATA_ROOT=${EPREFIX}/usr/share/${PN}/data" > ${T}/40${PN}
+ local ldpath="${EPREFIX}/usr/$(get_libdir)/InsightToolkit"
if use python; then
- echo
"PYTHONPATH=${EROOT}/usr/$(get_libdir)/InsightToolkit/WrapITK/Python" >>
"${T}"/40${PN}
-
ldpath="${ldpath}:${EROOT}/usr/$(get_libdir)/InsightToolkit/WrapITK/lib"
+ echo
"PYTHONPATH=${EPREFIX}/usr/$(get_libdir)/InsightToolkit/WrapITK/Python" >>
"${T}"/40${PN}
+
ldpath="${ldpath}:${EPREFIX}/usr/$(get_libdir)/InsightToolkit/WrapITK/lib"
fi
echo "LDPATH=${ldpath}" >> "${T}"/40${PN}
doenvd "${T}"/40${PN}
[gentoo-commits] proj/sci:master commit in: sci-libs/itk/files/, sci-libs/itk/
commit: be1836449dfcf8edc09329c66bb389a879f15fac
Author: Sébastien Fabbro bicatali AT gentoo DOT org
AuthorDate: Thu Apr 10 17:59:32 2014 +
Commit: Sebastien Fabbro bicatali AT gentoo DOT org
CommitDate: Thu Apr 10 17:59:32 2014 +
URL:
http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=be183644
sci-libs/itk: Version bump. Reworked ebuild
Package-Manager: portage-2.2.8-prefix
---
sci-libs/itk/ChangeLog | 11 ++
...p-TransformFileReader-TransformFileWriter.patch | 50 +++
...itkQuasiNewtonOptimizerv4-wrapping-warnin.patch | 28
...itkGradientDescentOptimizerv4-wrapping-wa.patch | 73 ++
...OptimizerParameterScalesEstimatorTemplate.patch | 30
.../0005-make-gdcm-helper-library-static.patch | 11 ++
sci-libs/itk/files/nrrdio-linking.patch| 15 ++
sci-libs/itk/itk-4.5.1.ebuild | 154 +
8 files changed, 372 insertions(+)
diff --git a/sci-libs/itk/ChangeLog b/sci-libs/itk/ChangeLog
index 6aeb88a..b68a4b5 100644
--- a/sci-libs/itk/ChangeLog
+++ b/sci-libs/itk/ChangeLog
@@ -2,6 +2,17 @@
# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+*itk-4.5.1 (10 Apr 2014)
+
+ 10 Apr 2014; Sébastien Fabbro bicat...@gentoo.org
+ +files/0001-BUG-Wrap-TransformFileReader-TransformFileWriter.patch,
+ +files/0002-COMP-Fixed-itkQuasiNewtonOptimizerv4-wrapping-warnin.patch,
+ +files/0003-COMP-Fixed-itkGradientDescentOptimizerv4-wrapping-wa.patch,
+ +files/0004-COMP-Warp-OptimizerParameterScalesEstimatorTemplate.patch,
+ +files/0005-make-gdcm-helper-library-static.patch,
+ +files/nrrdio-linking.patch, +itk-4.5.1.ebuild:
+ sci-libs/itk: Version bump. Reworked ebuild
+
06 Jan 2014; Justin Lecher j...@gentoo.org metadata.xml:
Fix missing local USE
diff --git
a/sci-libs/itk/files/0001-BUG-Wrap-TransformFileReader-TransformFileWriter.patch
b/sci-libs/itk/files/0001-BUG-Wrap-TransformFileReader-TransformFileWriter.patch
new file mode 100644
index 000..094ee32
--- /dev/null
+++
b/sci-libs/itk/files/0001-BUG-Wrap-TransformFileReader-TransformFileWriter.patch
@@ -0,0 +1,50 @@
+From d069b7b94287dae15fcaf707775f5dd2bbebcc38 Mon Sep 17 00:00:00 2001
+From: Matt McCormick matt.mccorm...@kitware.com
+Date: Wed, 5 Feb 2014 15:52:34 -0500
+Subject: [PATCH 1/3] BUG: Wrap TransformFileReader, TransformFileWriter.
+
+Missing CMakeLists.txt in the wrapping directory. Need to explicitly include
+the headers after Template was appended to the class name.
+
+Suggested-by: Sami Koho sami.k...@gmail.com
+
+Change-Id: I6f994bb18f37d5adf1d0f0311fa73506c41239a7
+---
+ Modules/IO/TransformBase/wrapping/CMakeLists.txt | 3 +++
+ Modules/IO/TransformBase/wrapping/itkTransformFileReader.wrap | 2 ++
+ Modules/IO/TransformBase/wrapping/itkTransformFileWriter.wrap | 2 ++
+ 3 files changed, 7 insertions(+)
+ create mode 100644 Modules/IO/TransformBase/wrapping/CMakeLists.txt
+
+diff --git a/Modules/IO/TransformBase/wrapping/CMakeLists.txt
b/Modules/IO/TransformBase/wrapping/CMakeLists.txt
+new file mode 100644
+index 000..6072567
+--- /dev/null
b/Modules/IO/TransformBase/wrapping/CMakeLists.txt
+@@ -0,0 +1,3 @@
++itk_wrap_module(ITKIOTransformBase)
++itk_auto_load_submodules()
++itk_end_wrap_module()
+diff --git a/Modules/IO/TransformBase/wrapping/itkTransformFileReader.wrap
b/Modules/IO/TransformBase/wrapping/itkTransformFileReader.wrap
+index 9b52fbc..662df9e 100644
+--- a/Modules/IO/TransformBase/wrapping/itkTransformFileReader.wrap
b/Modules/IO/TransformBase/wrapping/itkTransformFileReader.wrap
+@@ -1,3 +1,5 @@
++set(WRAPPER_AUTO_INCLUDE_HEADERS OFF)
++itk_wrap_include(itkTransformFileReader.h)
+ itk_wrap_class(itk::TransformFileReaderTemplate POINTER)
+ foreach(t ${WRAP_ITK_REAL})
+ itk_wrap_template(${ITKM_${t}} ${ITKT_${t}})
+diff --git a/Modules/IO/TransformBase/wrapping/itkTransformFileWriter.wrap
b/Modules/IO/TransformBase/wrapping/itkTransformFileWriter.wrap
+index 4f1ac4a..356aaf3 100644
+--- a/Modules/IO/TransformBase/wrapping/itkTransformFileWriter.wrap
b/Modules/IO/TransformBase/wrapping/itkTransformFileWriter.wrap
+@@ -1,3 +1,5 @@
++set(WRAPPER_AUTO_INCLUDE_HEADERS OFF)
++itk_wrap_include(itkTransformFileWriter.h)
+ itk_wrap_class(itk::TransformFileWriterTemplate POINTER)
+ foreach(t ${WRAP_ITK_REAL})
+ itk_wrap_template(${ITKM_${t}} ${ITKT_${t}})
+--
+1.8.5.3
+
diff --git
a/sci-libs/itk/files/0002-COMP-Fixed-itkQuasiNewtonOptimizerv4-wrapping-warnin.patch
b/sci-libs/itk/files/0002-COMP-Fixed-itkQuasiNewtonOptimizerv4-wrapping-warnin.patch
new file mode 100644
index 000..4c74d54
--- /dev/null
+++
b/sci-libs/itk/files/0002-COMP-Fixed-itkQuasiNewtonOptimizerv4-wrapping-warnin.patch
@@ -0,0 +1,28 @@
+From 66d2955fbe5528d9df216c639277d1d2686447e5 Mon Sep 17 00:00:00 2001
+From: Michka Popoff michkapop...@gmail.com
+Date: Fri, 7 Feb 2014 19:24:49 +0100
+Subject: [PATCH 2/3] COMP:
