[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/

2024-02-20 Thread Horea Christian 
commit: 11e20960ab3fda75eddcb5d7efca8c7708098d31
Author: Horea Christian  chymera  eu>
AuthorDate: Wed Feb 21 01:17:24 2024 +
Commit: Horea Christian  gmail  com>
CommitDate: Wed Feb 21 01:17:24 2024 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=11e20960

sci-libs/nipy: version bump, removed deprecated version

Signed-off-by: Horea Christian  chymera.eu>

 sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild | 52 -
 sci-libs/nipy/nipy-0.6.0.ebuild | 37 
 2 files changed, 37 insertions(+), 52 deletions(-)

diff --git a/sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild 
b/sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild
deleted file mode 100644
index 25bdee0b8..0
--- a/sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild
+++ /dev/null
@@ -1,52 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{10..11} )
-
-inherit distutils-r1
-
-MY_HASH="35a5f5205ba2aa54f1f0524564a6f1f8dafb237f"
-
-DESCRIPTION="Neuroimaging tools for Python"
-HOMEPAGE="https://nipy.org/;
-SRC_URI="https://github.com/${PN}/${PN}/archive/${MY_HASH}.tar.gz -> 
${P}.gh.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-RDEPEND="
-   dev-python/scipy[${PYTHON_USEDEP}]
-   dev-python/sympy[${PYTHON_USEDEP}]
-   sci-libs/nibabel[${PYTHON_USEDEP}]
-   dev-python/numpy[${PYTHON_USEDEP}]
-   "
-DEPEND=""
-
-S="${WORKDIR}/${PN}-${MY_HASH}"
-
-python_prepare_all() {
-   distutils-r1_python_prepare_all
-   # bug #397605
-   [[ ${CHOST} == *-darwin* ]] \
-   && append-ldflags -bundle "-undefined dynamic_lookup" \
-   || append-ldflags -shared
-
-   # nipy uses the horrible numpy.distutils automagic
-}
-
-#python_test() {
-#  distutils-r1_install_for_testing
-#  cp nipy/testing/*.nii.gz "${BUILD_DIR}/lib/nipy/testing/"
-#  cp nipy/modalities/fmri/tests/*.{mat,npz,txt} 
"${BUILD_DIR}/lib/nipy/modalities/fmri/tests/"
-#  cp nipy/algorithms/statistics/models/tests/test_data.bin 
"${BUILD_DIR}/lib/nipy/algorithms/statistics/models/tests"
-#  cp nipy/labs/spatial_models/tests/some_blobs.nii 
"${BUILD_DIR}/lib/nipy/labs/spatial_models/tests/some_blobs.nii"
-#  mkdir "${BUILD_DIR}/lib/nipy/algorithms/diagnostics/tests/data/"
-#  cp nipy/algorithms/diagnostics/tests/data/tsdiff_results.mat 
"${BUILD_DIR}/lib/nipy/algorithms/diagnostics/tests/data/"
-#  cd "${BUILD_DIR}" || die
-#  echo "backend : agg" > matplotlibrc
-#  nosetests || die
-#}

diff --git a/sci-libs/nipy/nipy-0.6.0.ebuild b/sci-libs/nipy/nipy-0.6.0.ebuild
new file mode 100644
index 0..8f8ea83e8
--- /dev/null
+++ b/sci-libs/nipy/nipy-0.6.0.ebuild
@@ -0,0 +1,37 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=meson-python
+PYTHON_COMPAT=( python3_{10..11} )
+DISTUTILS_EXT=1
+
+inherit distutils-r1
+
+DESCRIPTION="Neuroimaging tools for Python"
+HOMEPAGE="https://nipy.org/;
+SRC_URI="https://github.com/nipy/nipy/archive/refs/tags/${PV}.tar.gz -> 
${P}.gh.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+# Test data unavailable:
+# https://github.com/nipy/nipy/issues/561#event-11866547632
+RESTRICT="test"
+
+RDEPEND="
+   dev-python/scipy[${PYTHON_USEDEP}]
+   dev-python/sympy[${PYTHON_USEDEP}]
+   sci-libs/nibabel[${PYTHON_USEDEP}]
+   dev-python/numpy[${PYTHON_USEDEP}]
+   "
+DEPEND=""
+
+distutils_enable_tests pytest
+
+python_test() {
+   rm -rf nipy || die
+   epytest
+}

[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/

2023-05-02 Thread Horea Christian 
commit: 25abe29c72046b3cf1d3b4a1dc617c3bd90c05ac
Author: Horea Christian  chymera  eu>
AuthorDate: Tue May  2 23:53:24 2023 +
Commit: Horea Christian  gmail  com>
CommitDate: Tue May  2 23:53:24 2023 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=25abe29c

sci-libs/nipy: enable py3.11

Signed-off-by: Horea Christian  chymera.eu>

 sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild 
b/sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild
index 58deeab11..25bdee0b8 100644
--- a/sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild
+++ b/sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=8
 
-PYTHON_COMPAT=( python3_10 )
+PYTHON_COMPAT=( python3_{10..11} )
 
 inherit distutils-r1

[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/

2023-05-02 Thread Andrew Ammerlaan 
commit: 0c941833ff2ac8b3e3104f5a764aed88cf7b
Author: Andrew Ammerlaan  gentoo  org>
AuthorDate: Tue May  2 12:54:51 2023 +
Commit: Andrew Ammerlaan  gentoo  org>
CommitDate: Tue May  2 12:54:51 2023 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=0c941833

sci-libs/nipy: drop 0.4.2, 0.5.0-r1

Signed-off-by: Andrew Ammerlaan  gentoo.org>

 sci-libs/nipy/nipy-0.4.2.ebuild| 55 --
 sci-libs/nipy/nipy-0.5.0-r1.ebuild | 49 -
 2 files changed, 104 deletions(-)

diff --git a/sci-libs/nipy/nipy-0.4.2.ebuild b/sci-libs/nipy/nipy-0.4.2.ebuild
deleted file mode 100644
index be8bd42a5..0
--- a/sci-libs/nipy/nipy-0.4.2.ebuild
+++ /dev/null
@@ -1,55 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_10 )
-
-inherit distutils-r1
-
-DESCRIPTION="Neuroimaging tools for Python"
-HOMEPAGE="https://nipy.org/;
-SRC_URI="https://github.com/${PN}/${PN}/archive/${PV}.tar.gz -> ${P}.gh.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-RESTRICT="test"
-# reported upstream: https://github.com/nipy/nipy/issues/493
-
-RDEPEND="
-   dev-python/prov[${PYTHON_USEDEP}]
-   dev-python/scipy[${PYTHON_USEDEP}]
-   dev-python/sympy[${PYTHON_USEDEP}]
-   >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}]
-   dev-python/numpy[${PYTHON_USEDEP}]
-   "
-
-DEPEND="
-   ${RDEPEND}
-   dev-python/setuptools[${PYTHON_USEDEP}]
-   "
-
-python_prepare_all() {
-   distutils-r1_python_prepare_all
-   # bug #397605
-   [[ ${CHOST} == *-darwin* ]] \
-   && append-ldflags -bundle "-undefined dynamic_lookup" \
-   || append-ldflags -shared
-
-   # nipy uses the horrible numpy.distutils automagic
-}
-
-python_test() {
-   distutils-r1_install_for_testing
-   cp nipy/testing/*.nii.gz "${BUILD_DIR}/lib/nipy/testing/"
-   cp nipy/modalities/fmri/tests/*.{mat,npz,txt} 
"${BUILD_DIR}/lib/nipy/modalities/fmri/tests/"
-   cp nipy/algorithms/statistics/models/tests/test_data.bin 
"${BUILD_DIR}/lib/nipy/algorithms/statistics/models/tests"
-   cp nipy/labs/spatial_models/tests/some_blobs.nii 
"${BUILD_DIR}/lib/nipy/labs/spatial_models/tests/some_blobs.nii"
-   mkdir "${BUILD_DIR}/lib/nipy/algorithms/diagnostics/tests/data/"
-   cp nipy/algorithms/diagnostics/tests/data/tsdiff_results.mat 
"${BUILD_DIR}/lib/nipy/algorithms/diagnostics/tests/data/"
-   cd "${BUILD_DIR}" || die
-   echo "backend : agg" > matplotlibrc
-   nosetests || die
-}

diff --git a/sci-libs/nipy/nipy-0.5.0-r1.ebuild 
b/sci-libs/nipy/nipy-0.5.0-r1.ebuild
deleted file mode 100644
index 86fb52841..0
--- a/sci-libs/nipy/nipy-0.5.0-r1.ebuild
+++ /dev/null
@@ -1,49 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_10 )
-
-inherit distutils-r1
-
-DESCRIPTION="Neuroimaging tools for Python"
-HOMEPAGE="https://nipy.org/;
-SRC_URI="https://github.com/${PN}/${PN}/archive/${PV}.tar.gz -> ${P}.gh.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-# No tests, reported upstream: https://github.com/nipy/nipy/issues/493
-
-RDEPEND="
-   dev-python/scipy[${PYTHON_USEDEP}]
-   dev-python/sympy[${PYTHON_USEDEP}]
-   sci-libs/nibabel[${PYTHON_USEDEP}]
-matplotlibrc
-#  nosetests || die
-#}

[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/

2023-01-30 Thread Horea Christian 
commit: 8f54232590230c92ea318e914888a3e2752bbef1
Author: Horea Christian  chymera  eu>
AuthorDate: Mon Jan 30 10:41:22 2023 +
Commit: Horea Christian  gmail  com>
CommitDate: Mon Jan 30 10:41:22 2023 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=8f542325

sci-libs/nipy: using gh source file suffix

Signed-off-by: Horea Christian  chymera.eu>

 sci-libs/nipy/nipy-0.4.2.ebuild | 2 +-
 sci-libs/nipy/nipy-0.5.0-r1.ebuild  | 2 +-
 sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/sci-libs/nipy/nipy-0.4.2.ebuild b/sci-libs/nipy/nipy-0.4.2.ebuild
index 6d97b7b09..be8bd42a5 100644
--- a/sci-libs/nipy/nipy-0.4.2.ebuild
+++ b/sci-libs/nipy/nipy-0.4.2.ebuild
@@ -9,7 +9,7 @@ inherit distutils-r1
 
 DESCRIPTION="Neuroimaging tools for Python"
 HOMEPAGE="https://nipy.org/;
-SRC_URI="https://github.com/${PN}/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz"
+SRC_URI="https://github.com/${PN}/${PN}/archive/${PV}.tar.gz -> ${P}.gh.tar.gz"
 
 LICENSE="BSD"
 SLOT="0"

diff --git a/sci-libs/nipy/nipy-0.5.0-r1.ebuild 
b/sci-libs/nipy/nipy-0.5.0-r1.ebuild
index 227364ec4..86fb52841 100644
--- a/sci-libs/nipy/nipy-0.5.0-r1.ebuild
+++ b/sci-libs/nipy/nipy-0.5.0-r1.ebuild
@@ -9,7 +9,7 @@ inherit distutils-r1
 
 DESCRIPTION="Neuroimaging tools for Python"
 HOMEPAGE="https://nipy.org/;
-SRC_URI="https://github.com/${PN}/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz"
+SRC_URI="https://github.com/${PN}/${PN}/archive/${PV}.tar.gz -> ${P}.gh.tar.gz"
 
 LICENSE="BSD"
 SLOT="0"

diff --git a/sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild 
b/sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild
index 22c5bbde0..58deeab11 100644
--- a/sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild
+++ b/sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild
@@ -11,7 +11,7 @@ MY_HASH="35a5f5205ba2aa54f1f0524564a6f1f8dafb237f"
 
 DESCRIPTION="Neuroimaging tools for Python"
 HOMEPAGE="https://nipy.org/;
-SRC_URI="https://github.com/${PN}/${PN}/archive/${MY_HASH}.tar.gz -> 
${P}.tar.gz"
+SRC_URI="https://github.com/${PN}/${PN}/archive/${MY_HASH}.tar.gz -> 
${P}.gh.tar.gz"
 
 LICENSE="BSD"
 SLOT="0"

[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/

2023-01-30 Thread Horea Christian 
commit: 0e1f46a60149e2805e3c5287484a0e94487df0fd
Author: Horea Christian  chymera  eu>
AuthorDate: Mon Jan 30 10:35:02 2023 +
Commit: Horea Christian  gmail  com>
CommitDate: Mon Jan 30 10:35:02 2023 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=0e1f46a6

sci-libs/nipy: add 0.5.1_pre20230103

Signed-off-by: Horea Christian  chymera.eu>

 sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild | 52 +
 1 file changed, 52 insertions(+)

diff --git a/sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild 
b/sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild
new file mode 100644
index 0..22c5bbde0
--- /dev/null
+++ b/sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild
@@ -0,0 +1,52 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_10 )
+
+inherit distutils-r1
+
+MY_HASH="35a5f5205ba2aa54f1f0524564a6f1f8dafb237f"
+
+DESCRIPTION="Neuroimaging tools for Python"
+HOMEPAGE="https://nipy.org/;
+SRC_URI="https://github.com/${PN}/${PN}/archive/${MY_HASH}.tar.gz -> 
${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+RDEPEND="
+   dev-python/scipy[${PYTHON_USEDEP}]
+   dev-python/sympy[${PYTHON_USEDEP}]
+   sci-libs/nibabel[${PYTHON_USEDEP}]
+   dev-python/numpy[${PYTHON_USEDEP}]
+   "
+DEPEND=""
+
+S="${WORKDIR}/${PN}-${MY_HASH}"
+
+python_prepare_all() {
+   distutils-r1_python_prepare_all
+   # bug #397605
+   [[ ${CHOST} == *-darwin* ]] \
+   && append-ldflags -bundle "-undefined dynamic_lookup" \
+   || append-ldflags -shared
+
+   # nipy uses the horrible numpy.distutils automagic
+}
+
+#python_test() {
+#  distutils-r1_install_for_testing
+#  cp nipy/testing/*.nii.gz "${BUILD_DIR}/lib/nipy/testing/"
+#  cp nipy/modalities/fmri/tests/*.{mat,npz,txt} 
"${BUILD_DIR}/lib/nipy/modalities/fmri/tests/"
+#  cp nipy/algorithms/statistics/models/tests/test_data.bin 
"${BUILD_DIR}/lib/nipy/algorithms/statistics/models/tests"
+#  cp nipy/labs/spatial_models/tests/some_blobs.nii 
"${BUILD_DIR}/lib/nipy/labs/spatial_models/tests/some_blobs.nii"
+#  mkdir "${BUILD_DIR}/lib/nipy/algorithms/diagnostics/tests/data/"
+#  cp nipy/algorithms/diagnostics/tests/data/tsdiff_results.mat 
"${BUILD_DIR}/lib/nipy/algorithms/diagnostics/tests/data/"
+#  cd "${BUILD_DIR}" || die
+#  echo "backend : agg" > matplotlibrc
+#  nosetests || die
+#}

[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/

2023-01-26 Thread Horea Christian 
commit: 88b7a3cbbffc0acea5d38d78f799178f17dd47f9
Author: Horea Christian  chymera  eu>
AuthorDate: Thu Jan 26 21:15:36 2023 +
Commit: Horea Christian  gmail  com>
CommitDate: Thu Jan 26 21:15:36 2023 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=88b7a3cb

sci-libs/nipy: revbump for numpy compatibility

Signed-off-by: Horea Christian  chymera.eu>

 sci-libs/nipy/{nipy-0.5.0.ebuild => nipy-0.5.0-r1.ebuild} | 9 +++--
 1 file changed, 3 insertions(+), 6 deletions(-)

diff --git a/sci-libs/nipy/nipy-0.5.0.ebuild 
b/sci-libs/nipy/nipy-0.5.0-r1.ebuild
similarity index 88%
rename from sci-libs/nipy/nipy-0.5.0.ebuild
rename to sci-libs/nipy/nipy-0.5.0-r1.ebuild
index 2dbabadfd..227364ec4 100644
--- a/sci-libs/nipy/nipy-0.5.0.ebuild
+++ b/sci-libs/nipy/nipy-0.5.0-r1.ebuild
@@ -15,19 +15,16 @@ LICENSE="BSD"
 SLOT="0"
 KEYWORDS="~amd64 ~x86"
 IUSE=""
-RESTRICT="test"
-# reported upstream: https://github.com/nipy/nipy/issues/493
+# No tests, reported upstream: https://github.com/nipy/nipy/issues/493
 
 RDEPEND="
dev-python/scipy[${PYTHON_USEDEP}]
dev-python/sympy[${PYTHON_USEDEP}]
-   >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}]
-   dev-python/numpy[${PYTHON_USEDEP}]
+   sci-libs/nibabel[${PYTHON_USEDEP}]
+

[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/

2022-07-11 Thread Horea Christian 
commit: aba880d830583497220a3829a0d2250bdf168aa9
Author: Horea Christian  chymera  eu>
AuthorDate: Mon Jul 11 14:39:23 2022 +
Commit: Horea Christian  gmail  com>
CommitDate: Mon Jul 11 14:39:23 2022 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=aba880d8

sci-libs/nipy: removed stale live ebuild

Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Horea Christian  chymera.eu>

 sci-libs/nipy/nipy-.ebuild | 54 --
 1 file changed, 54 deletions(-)

diff --git a/sci-libs/nipy/nipy-.ebuild b/sci-libs/nipy/nipy-.ebuild
deleted file mode 100644
index 7acc9a234..0
--- a/sci-libs/nipy/nipy-.ebuild
+++ /dev/null
@@ -1,54 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_{7..9} )
-
-inherit distutils-r1 flag-o-matic git-r3
-
-DESCRIPTION="Neuroimaging tools for Python"
-HOMEPAGE="https://nipy.org/;
-SRC_URI=""
-EGIT_REPO_URI="https://github.com/nipy/nipy;
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS=""
-IUSE=""
-
-RDEPEND="
-   dev-python/prov[${PYTHON_USEDEP}]
-   dev-python/scipy[${PYTHON_USEDEP}]
-   dev-python/sympy[${PYTHON_USEDEP}]
-   >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}]
-   dev-python/numpy[${PYTHON_USEDEP}]
-   "
-
-DEPEND="
-   ${RDEPEND}
-   dev-python/setuptools[${PYTHON_USEDEP}]
-   "
-
-python_prepare_all() {
-   distutils-r1_python_prepare_all
-   # bug #397605
-   [[ ${CHOST} == *-darwin* ]] \
-   && append-ldflags -bundle "-undefined dynamic_lookup" \
-   || append-ldflags -shared
-
-   # nipy uses the horrible numpy.distutils automagic
-}
-
-python_test() {
-   distutils-r1_install_for_testing
-   cp nipy/testing/*.nii.gz "${BUILD_DIR}/lib/nipy/testing/"
-   cp nipy/modalities/fmri/tests/*.{mat,npz,txt} 
"${BUILD_DIR}/lib/nipy/modalities/fmri/tests/"
-   cp nipy/algorithms/statistics/models/tests/test_data.bin 
"${BUILD_DIR}/lib/nipy/algorithms/statistics/models/tests"
-   cp nipy/labs/spatial_models/tests/some_blobs.nii 
"${BUILD_DIR}/lib/nipy/labs/spatial_models/tests/some_blobs.nii"
-   mkdir "${BUILD_DIR}/lib/nipy/algorithms/diagnostics/tests/data/"
-   cp nipy/algorithms/diagnostics/tests/data/tsdiff_results.mat 
"${BUILD_DIR}/lib/nipy/algorithms/diagnostics/tests/data/"
-   cd "${BUILD_DIR}" || die
-   echo "backend : agg" > matplotlibrc
-   nosetests || die
-}

[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/

2022-07-11 Thread Horea Christian 
commit: ac5a5ff03452db2dbcaff780a74fde8e5731d7de
Author: Horea Christian  chymera  eu>
AuthorDate: Mon Jul 11 14:39:00 2022 +
Commit: Horea Christian  gmail  com>
CommitDate: Mon Jul 11 14:39:00 2022 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=ac5a5ff0

sci-libs/nipy: EAPI/PYTHON_COMPAT bump and restricted tests

Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Horea Christian  chymera.eu>

 sci-libs/nipy/nipy-0.4.2.ebuild | 10 
 sci-libs/nipy/nipy-0.5.0.ebuild | 52 +
 2 files changed, 58 insertions(+), 4 deletions(-)

diff --git a/sci-libs/nipy/nipy-0.4.2.ebuild b/sci-libs/nipy/nipy-0.4.2.ebuild
index c20d904f5..3b483638f 100644
--- a/sci-libs/nipy/nipy-0.4.2.ebuild
+++ b/sci-libs/nipy/nipy-0.4.2.ebuild
@@ -1,11 +1,11 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=7
+EAPI=8
 
-PYTHON_COMPAT=( python3_{7..9} )
+PYTHON_COMPAT=( python3_{8..10} )
 
-inherit distutils-r1 flag-o-matic
+inherit distutils-r1
 
 DESCRIPTION="Neuroimaging tools for Python"
 HOMEPAGE="https://nipy.org/;
@@ -15,6 +15,8 @@ LICENSE="BSD"
 SLOT="0"
 KEYWORDS="~amd64 ~x86"
 IUSE=""
+RESTRICT="test"
+# reported upstream: https://github.com/nipy/nipy/issues/493
 
 RDEPEND="
dev-python/prov[${PYTHON_USEDEP}]

diff --git a/sci-libs/nipy/nipy-0.5.0.ebuild b/sci-libs/nipy/nipy-0.5.0.ebuild
new file mode 100644
index 0..81a462c96
--- /dev/null
+++ b/sci-libs/nipy/nipy-0.5.0.ebuild
@@ -0,0 +1,52 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{8..10} )
+
+inherit distutils-r1
+
+DESCRIPTION="Neuroimaging tools for Python"
+HOMEPAGE="https://nipy.org/;
+SRC_URI="https://github.com/${PN}/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+RESTRICT="test"
+# reported upstream: https://github.com/nipy/nipy/issues/493
+
+RDEPEND="
+   dev-python/scipy[${PYTHON_USEDEP}]
+   dev-python/sympy[${PYTHON_USEDEP}]
+   >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}]
+   dev-python/numpy[${PYTHON_USEDEP}]
+   "
+DEPEND=""
+
+distutils_enable_tests nose
+
+python_prepare_all() {
+   distutils-r1_python_prepare_all
+   # bug #397605
+   [[ ${CHOST} == *-darwin* ]] \
+   && append-ldflags -bundle "-undefined dynamic_lookup" \
+   || append-ldflags -shared
+
+   # nipy uses the horrible numpy.distutils automagic
+}
+
+#python_test() {
+#  distutils-r1_install_for_testing
+#  cp nipy/testing/*.nii.gz "${BUILD_DIR}/lib/nipy/testing/"
+#  cp nipy/modalities/fmri/tests/*.{mat,npz,txt} 
"${BUILD_DIR}/lib/nipy/modalities/fmri/tests/"
+#  cp nipy/algorithms/statistics/models/tests/test_data.bin 
"${BUILD_DIR}/lib/nipy/algorithms/statistics/models/tests"
+#  cp nipy/labs/spatial_models/tests/some_blobs.nii 
"${BUILD_DIR}/lib/nipy/labs/spatial_models/tests/some_blobs.nii"
+#  mkdir "${BUILD_DIR}/lib/nipy/algorithms/diagnostics/tests/data/"
+#  cp nipy/algorithms/diagnostics/tests/data/tsdiff_results.mat 
"${BUILD_DIR}/lib/nipy/algorithms/diagnostics/tests/data/"
+#  cd "${BUILD_DIR}" || die
+#  echo "backend : agg" > matplotlibrc
+#  nosetests || die
+#}

[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/

2021-12-16 Thread Andrew Ammerlaan 
commit: b27d4d4cd2e65c13c8e56df91db884465cc4aae4
Author: Andrew Ammerlaan  gentoo  org>
AuthorDate: Thu Dec 16 10:47:51 2021 +
Commit: Andrew Ammerlaan  gentoo  org>
CommitDate: Thu Dec 16 10:47:51 2021 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=b27d4d4c

sci-libs/nipy: drop UnusedInherits

Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan  gentoo.org>

 sci-libs/nipy/nipy-0.4.2.ebuild | 2 +-
 sci-libs/nipy/nipy-.ebuild  | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-libs/nipy/nipy-0.4.2.ebuild b/sci-libs/nipy/nipy-0.4.2.ebuild
index 3749f7ae2..c20d904f5 100644
--- a/sci-libs/nipy/nipy-0.4.2.ebuild
+++ b/sci-libs/nipy/nipy-0.4.2.ebuild
@@ -5,7 +5,7 @@ EAPI=7
 
 PYTHON_COMPAT=( python3_{7..9} )
 
-inherit distutils-r1 eutils multilib flag-o-matic
+inherit distutils-r1 flag-o-matic
 
 DESCRIPTION="Neuroimaging tools for Python"
 HOMEPAGE="https://nipy.org/;

diff --git a/sci-libs/nipy/nipy-.ebuild b/sci-libs/nipy/nipy-.ebuild
index 7e0f61d2d..7acc9a234 100644
--- a/sci-libs/nipy/nipy-.ebuild
+++ b/sci-libs/nipy/nipy-.ebuild
@@ -5,7 +5,7 @@ EAPI=7
 
 PYTHON_COMPAT=( python3_{7..9} )
 
-inherit distutils-r1 eutils multilib flag-o-matic git-r3
+inherit distutils-r1 flag-o-matic git-r3
 
 DESCRIPTION="Neuroimaging tools for Python"
 HOMEPAGE="https://nipy.org/;

[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/

2021-06-01 Thread Andrew Ammerlaan 
commit: d18bd689c3c0e6f52af0c0125ea1f15050902eb0
Author: Andrew Ammerlaan  gentoo  org>
AuthorDate: Tue Jun  1 08:37:52 2021 +
Commit: Andrew Ammerlaan  gentoo  org>
CommitDate: Tue Jun  1 08:38:17 2021 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=d18bd689

sci-libs/nipy: bump PYTHON_COMPAT in  to match latest release

Bug: https://bugs.gentoo.org/793617
Package-Manager: Portage-3.0.19, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan  gentoo.org>

 sci-libs/nipy/nipy-.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-libs/nipy/nipy-.ebuild b/sci-libs/nipy/nipy-.ebuild
index 9878397aa..7e0f61d2d 100644
--- a/sci-libs/nipy/nipy-.ebuild
+++ b/sci-libs/nipy/nipy-.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=7
 
-PYTHON_COMPAT=( python3_7 )
+PYTHON_COMPAT=( python3_{7..9} )
 
 inherit distutils-r1 eutils multilib flag-o-matic git-r3

[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/

2021-01-30 Thread Andrew Ammerlaan 
commit: 36307c7234a79c480914318f22c5a6b5eb2abcba
Author: Andrew Ammerlaan  riseup  net>
AuthorDate: Sat Jan 30 15:20:25 2021 +
Commit: Andrew Ammerlaan  riseup  net>
CommitDate: Sat Jan 30 15:20:25 2021 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=36307c72

sci-libs/nipy: remove redundant long description

Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan  riseup.net>

 sci-libs/nipy/metadata.xml | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/sci-libs/nipy/metadata.xml b/sci-libs/nipy/metadata.xml
index 6ba3b6389..327dd23d3 100644
--- a/sci-libs/nipy/metadata.xml
+++ b/sci-libs/nipy/metadata.xml
@@ -9,9 +9,6 @@
s...@gentoo.org
Gentoo Science Project

-   
-NIPY is a python project for analysis of structural and functional 
neuroimaging data.
-

nipy

[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/

2021-01-20 Thread Andrew Ammerlaan 
commit: e53c0b5cdc93a368633f13842bf4559b61a9e77f
Author: Andrew Ammerlaan  riseup  net>
AuthorDate: Wed Jan 20 09:39:47 2021 +
Commit: Andrew Ammerlaan  riseup  net>
CommitDate: Wed Jan 20 09:39:47 2021 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=e53c0b5c

sci-libs/nipy: drop old: failed REQUIRED_USE: py_targets_py3_7

Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan  riseup.net>

 sci-libs/nipy/nipy-0.4.1.ebuild | 40 
 1 file changed, 40 deletions(-)

diff --git a/sci-libs/nipy/nipy-0.4.1.ebuild b/sci-libs/nipy/nipy-0.4.1.ebuild
deleted file mode 100644
index 81f6aa14a..0
--- a/sci-libs/nipy/nipy-0.4.1.ebuild
+++ /dev/null
@@ -1,40 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_7 )
-
-inherit distutils-r1 eutils multilib flag-o-matic
-
-DESCRIPTION="Neuroimaging tools for Python"
-HOMEPAGE="https://nipy.org/;
-SRC_URI="https://github.com/${PN}/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-RDEPEND="
-   dev-python/prov[${PYTHON_USEDEP}]
-   dev-python/scipy[${PYTHON_USEDEP}]
-   dev-python/sympy[${PYTHON_USEDEP}]
-   >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}]
-   dev-python/numpy[${PYTHON_USEDEP}]
-   "
-
-DEPEND="
-   ${RDEPEND}
-   dev-python/setuptools[${PYTHON_USEDEP}]
-   "
-
-python_prepare_all() {
-   distutils-r1_python_prepare_all
-   # bug #397605
-   [[ ${CHOST} == *-darwin* ]] \
-   && append-ldflags -bundle "-undefined dynamic_lookup" \
-   || append-ldflags -shared
-
-   # nipy uses the horrible numpy.distutils automagic
-}

[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/

2021-01-13 Thread Andrew Ammerlaan 
commit: 05b74f55153f269bc317ff73437b75afbf47ffd8
Author: Andrew Ammerlaan  riseup  net>
AuthorDate: Wed Jan 13 21:03:04 2021 +
Commit: Andrew Ammerlaan  riseup  net>
CommitDate: Wed Jan 13 21:03:04 2021 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=05b74f55

sci-libs/nipy: use https for homepage

Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan  riseup.net>

 sci-libs/nipy/nipy-0.4.1.ebuild | 4 ++--
 sci-libs/nipy/nipy-0.4.2.ebuild | 4 ++--
 sci-libs/nipy/nipy-.ebuild  | 4 ++--
 3 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/sci-libs/nipy/nipy-0.4.1.ebuild b/sci-libs/nipy/nipy-0.4.1.ebuild
index 81c038413..81f6aa14a 100644
--- a/sci-libs/nipy/nipy-0.4.1.ebuild
+++ b/sci-libs/nipy/nipy-0.4.1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2020 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
@@ -8,7 +8,7 @@ PYTHON_COMPAT=( python3_7 )
 inherit distutils-r1 eutils multilib flag-o-matic
 
 DESCRIPTION="Neuroimaging tools for Python"
-HOMEPAGE="http://nipy.org/;
+HOMEPAGE="https://nipy.org/;
 SRC_URI="https://github.com/${PN}/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz"
 
 LICENSE="BSD"

diff --git a/sci-libs/nipy/nipy-0.4.2.ebuild b/sci-libs/nipy/nipy-0.4.2.ebuild
index dfc536d4c..3749f7ae2 100644
--- a/sci-libs/nipy/nipy-0.4.2.ebuild
+++ b/sci-libs/nipy/nipy-0.4.2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2020 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
@@ -8,7 +8,7 @@ PYTHON_COMPAT=( python3_{7..9} )
 inherit distutils-r1 eutils multilib flag-o-matic
 
 DESCRIPTION="Neuroimaging tools for Python"
-HOMEPAGE="http://nipy.org/;
+HOMEPAGE="https://nipy.org/;
 SRC_URI="https://github.com/${PN}/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz"
 
 LICENSE="BSD"

diff --git a/sci-libs/nipy/nipy-.ebuild b/sci-libs/nipy/nipy-.ebuild
index 5eac0416a..9878397aa 100644
--- a/sci-libs/nipy/nipy-.ebuild
+++ b/sci-libs/nipy/nipy-.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2020 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
@@ -8,7 +8,7 @@ PYTHON_COMPAT=( python3_7 )
 inherit distutils-r1 eutils multilib flag-o-matic git-r3
 
 DESCRIPTION="Neuroimaging tools for Python"
-HOMEPAGE="http://nipy.org/;
+HOMEPAGE="https://nipy.org/;
 SRC_URI=""
 EGIT_REPO_URI="https://github.com/nipy/nipy;

[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/

2020-12-23 Thread Horea Christian 
commit: 3067a289729c8feeb35a162ce6974d4182394242
Author: Horea Christian  chymera  eu>
AuthorDate: Wed Dec 23 08:04:40 2020 +
Commit: Horea Christian  gmail  com>
CommitDate: Wed Dec 23 08:04:40 2020 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=3067a289

sci-libs/nipy: updated PYTHON_COMPAT

Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Horea Christian  chymera.eu>

 sci-libs/nipy/nipy-0.4.2.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-libs/nipy/nipy-0.4.2.ebuild b/sci-libs/nipy/nipy-0.4.2.ebuild
index 69663fc86..dfc536d4c 100644
--- a/sci-libs/nipy/nipy-0.4.2.ebuild
+++ b/sci-libs/nipy/nipy-0.4.2.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=7
 
-PYTHON_COMPAT=( python3_7 )
+PYTHON_COMPAT=( python3_{7..9} )
 
 inherit distutils-r1 eutils multilib flag-o-matic

[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/

2020-09-26 Thread Horea Christian 
commit: 8867a035bf176626d5ba3c445e1bc1624ea7913f
Author: Horea Christian  chymera  eu>
AuthorDate: Sun Sep 27 04:21:37 2020 +
Commit: Horea Christian  gmail  com>
CommitDate: Sun Sep 27 04:21:37 2020 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=8867a035

sci-libs/nipy: removed KEYWORDS to match dev-python/prov

Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian  chymera.eu>

 sci-libs/nipy/nipy-0.4.1.ebuild | 2 +-
 sci-libs/nipy/nipy-0.4.2.ebuild | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-libs/nipy/nipy-0.4.1.ebuild b/sci-libs/nipy/nipy-0.4.1.ebuild
index ea3c05d80..81c038413 100644
--- a/sci-libs/nipy/nipy-0.4.1.ebuild
+++ b/sci-libs/nipy/nipy-0.4.1.ebuild
@@ -13,7 +13,7 @@ SRC_URI="https://github.com/${PN}/${PN}/archive/${PV}.tar.gz 
-> ${P}.tar.gz"
 
 LICENSE="BSD"
 SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="~amd64 ~x86"
 IUSE=""
 
 RDEPEND="

diff --git a/sci-libs/nipy/nipy-0.4.2.ebuild b/sci-libs/nipy/nipy-0.4.2.ebuild
index 2793dc057..69663fc86 100644
--- a/sci-libs/nipy/nipy-0.4.2.ebuild
+++ b/sci-libs/nipy/nipy-0.4.2.ebuild
@@ -13,7 +13,7 @@ SRC_URI="https://github.com/${PN}/${PN}/archive/${PV}.tar.gz 
-> ${P}.tar.gz"
 
 LICENSE="BSD"
 SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="~amd64 ~x86"
 IUSE=""
 
 RDEPEND="

[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/

2020-09-26 Thread Horea Christian 
commit: be7bc5dffb18eb95db07ce1c6d49c5ceab398096
Author: Horea Christian  chymera  eu>
AuthorDate: Sat Sep 26 11:38:19 2020 +
Commit: Horea Christian  gmail  com>
CommitDate: Sat Sep 26 11:38:19 2020 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=be7bc5df

sci-libs/nipy: PYTHON_COMPAT and live ebuild update

Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian  chymera.eu>

 sci-libs/nipy/nipy-0.4.1.ebuild |  2 +-
 sci-libs/nipy/nipy-0.4.2.ebuild |  2 +-
 sci-libs/nipy/nipy-.ebuild  | 33 +
 3 files changed, 27 insertions(+), 10 deletions(-)

diff --git a/sci-libs/nipy/nipy-0.4.1.ebuild b/sci-libs/nipy/nipy-0.4.1.ebuild
index 93f16c86b..ea3c05d80 100644
--- a/sci-libs/nipy/nipy-0.4.1.ebuild
+++ b/sci-libs/nipy/nipy-0.4.1.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=7
 
-PYTHON_COMPAT=( python3_6 )
+PYTHON_COMPAT=( python3_7 )
 
 inherit distutils-r1 eutils multilib flag-o-matic
 

diff --git a/sci-libs/nipy/nipy-0.4.2.ebuild b/sci-libs/nipy/nipy-0.4.2.ebuild
index b2151fb91..2793dc057 100644
--- a/sci-libs/nipy/nipy-0.4.2.ebuild
+++ b/sci-libs/nipy/nipy-0.4.2.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=7
 
-PYTHON_COMPAT=( python3_{6,7} )
+PYTHON_COMPAT=( python3_7 )
 
 inherit distutils-r1 eutils multilib flag-o-matic
 

diff --git a/sci-libs/nipy/nipy-.ebuild b/sci-libs/nipy/nipy-.ebuild
index 0fb447c4f..5eac0416a 100644
--- a/sci-libs/nipy/nipy-.ebuild
+++ b/sci-libs/nipy/nipy-.ebuild
@@ -3,9 +3,9 @@
 
 EAPI=7
 
-PYTHON_COMPAT=( python3_6 )
+PYTHON_COMPAT=( python3_7 )
 
-inherit distutils-r1 multilib git-r3 flag-o-matic
+inherit distutils-r1 eutils multilib flag-o-matic git-r3
 
 DESCRIPTION="Neuroimaging tools for Python"
 HOMEPAGE="http://nipy.org/;
@@ -14,17 +14,21 @@ EGIT_REPO_URI="https://github.com/nipy/nipy;
 
 LICENSE="BSD"
 SLOT="0"
-IUSE=""
 KEYWORDS=""
+IUSE=""
 
-DEPEND="
+RDEPEND="
dev-python/prov[${PYTHON_USEDEP}]
-   dev-python/setuptools[${PYTHON_USEDEP}]
-   dev-python/numpy[${PYTHON_USEDEP}]"
-RDEPEND="${DEPEND}
dev-python/scipy[${PYTHON_USEDEP}]
dev-python/sympy[${PYTHON_USEDEP}]
-   >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}]"
+   >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}]
+   dev-python/numpy[${PYTHON_USEDEP}]
+   "
+
+DEPEND="
+   ${RDEPEND}
+   dev-python/setuptools[${PYTHON_USEDEP}]
+   "
 
 python_prepare_all() {
distutils-r1_python_prepare_all
@@ -35,3 +39,16 @@ python_prepare_all() {
 
# nipy uses the horrible numpy.distutils automagic
 }
+
+python_test() {
+   distutils-r1_install_for_testing
+   cp nipy/testing/*.nii.gz "${BUILD_DIR}/lib/nipy/testing/"
+   cp nipy/modalities/fmri/tests/*.{mat,npz,txt} 
"${BUILD_DIR}/lib/nipy/modalities/fmri/tests/"
+   cp nipy/algorithms/statistics/models/tests/test_data.bin 
"${BUILD_DIR}/lib/nipy/algorithms/statistics/models/tests"
+   cp nipy/labs/spatial_models/tests/some_blobs.nii 
"${BUILD_DIR}/lib/nipy/labs/spatial_models/tests/some_blobs.nii"
+   mkdir "${BUILD_DIR}/lib/nipy/algorithms/diagnostics/tests/data/"
+   cp nipy/algorithms/diagnostics/tests/data/tsdiff_results.mat 
"${BUILD_DIR}/lib/nipy/algorithms/diagnostics/tests/data/"
+   cd "${BUILD_DIR}" || die
+   echo "backend : agg" > matplotlibrc
+   nosetests || die
+}

[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/

2020-03-28 Thread Horea Christian 
commit: 65c3bccb4543dd68ac78a3805371228dd4e7dd8a
Author: Horea Christian  chymera  eu>
AuthorDate: Sun Mar 29 02:55:22 2020 +
Commit: Horea Christian  gmail  com>
CommitDate: Sun Mar 29 02:55:22 2020 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=65c3bccb

sci-libs/nipy: PYTHON_COMPAT 3_7

Package-Manager: Portage-2.3.96, Repoman-2.3.22
Signed-off-by: Horea Christian  chymera.eu>

 sci-libs/nipy/nipy-0.4.2.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-libs/nipy/nipy-0.4.2.ebuild b/sci-libs/nipy/nipy-0.4.2.ebuild
index 7afdf0053..91b6a3d9b 100644
--- a/sci-libs/nipy/nipy-0.4.2.ebuild
+++ b/sci-libs/nipy/nipy-0.4.2.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=7
 
-PYTHON_COMPAT=( python3_6 )
+PYTHON_COMPAT=( python3_{6,7} )
 
 inherit distutils-r1 eutils multilib flag-o-matic

[gentoo-commits] proj/sci:master commit in: sci-libs/nipy-templates/

2020-03-24 Thread Horea Christian 
commit: 3e15fbd3c424ccd86c0001de906ce29c0f29ead0
Author: Horea Christian  chymera  eu>
AuthorDate: Tue Mar 24 23:00:27 2020 +
Commit: Horea Christian  gmail  com>
CommitDate: Tue Mar 24 23:00:27 2020 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=3e15fbd3

sci-libs/nipy-templates: remove from tree.

Unmaintained, not used by any packages

Signed-off-by: Horea Christian  chymera.eu>

 sci-libs/nipy-templates/metadata.xml  | 15 ---
 sci-libs/nipy-templates/nipy-templates-0.2.ebuild | 20 
 2 files changed, 35 deletions(-)

diff --git a/sci-libs/nipy-templates/metadata.xml 
b/sci-libs/nipy-templates/metadata.xml
deleted file mode 100644
index 1b34497a7..0
--- a/sci-libs/nipy-templates/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-
-http://www.gentoo.org/dtd/metadata.dtd;>
-
-   
-   horea.chr...@gmail.com
-   Horea Christian
-   
-   
-   s...@gentoo.org
-   Gentoo Science Project
-   
-   
-Nipy-templates is a package containing template files needed by some nipy 
functions.
-
-

diff --git a/sci-libs/nipy-templates/nipy-templates-0.2.ebuild 
b/sci-libs/nipy-templates/nipy-templates-0.2.ebuild
deleted file mode 100644
index 0cde31df8..0
--- a/sci-libs/nipy-templates/nipy-templates-0.2.ebuild
+++ /dev/null
@@ -1,20 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit distutils-r1
-
-DESCRIPTION="Normalization templates for Python Neuroimaging"
-HOMEPAGE="http://nipy.org/;
-SRC_URI="http://nipy.org/data-packages/${P}.tar.gz;
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND=""
-DEPEND=""

[gentoo-commits] proj/sci:master commit in: sci-libs/nipy-data/

2020-03-23 Thread Horea Christian 
commit: 65423f81ac69a42006426cbcc1c4a55b8295a89d
Author: Horea Christian  chymera  eu>
AuthorDate: Tue Mar 24 03:40:34 2020 +
Commit: Horea Christian  gmail  com>
CommitDate: Tue Mar 24 03:41:14 2020 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=65423f81

sci-libs/nipy-data: remove from tree.

Unmaintained, not used by any packages

Signed-off-by: Horea Christian  chymera.eu>

 sci-libs/nipy-data/metadata.xml | 15 ---
 sci-libs/nipy-data/nipy-data-0.2.ebuild | 20 
 2 files changed, 35 deletions(-)

diff --git a/sci-libs/nipy-data/metadata.xml b/sci-libs/nipy-data/metadata.xml
deleted file mode 100644
index 920dec48f..0
--- a/sci-libs/nipy-data/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-
-http://www.gentoo.org/dtd/metadata.dtd;>
-
-   
-   horea.chr...@gmail.com
-   Horea Christian
-   
-   
-   s...@gentoo.org
-   Gentoo Science Project
-   
-   
-Nipy-data is a package containing data files needed for many nipy demo 
tutorials.
-
-

diff --git a/sci-libs/nipy-data/nipy-data-0.2.ebuild 
b/sci-libs/nipy-data/nipy-data-0.2.ebuild
deleted file mode 100644
index 7fb12a06f..0
--- a/sci-libs/nipy-data/nipy-data-0.2.ebuild
+++ /dev/null
@@ -1,20 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit distutils-r1
-
-DESCRIPTION="Demo Data for Python Neuroimaging"
-HOMEPAGE="http://nipy.org/;
-SRC_URI="http://nipy.org/data-packages/${P}.tar.gz;
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND=""
-DEPEND=""

[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/

2020-01-07 Thread Horea Christian 
commit: e7a8e94b2ede21f1c75d7bc034b1084da581dcd2
Author: Horea Christian  chymera  eu>
AuthorDate: Tue Jan  7 22:00:48 2020 +
Commit: Horea Christian  gmail  com>
CommitDate: Tue Jan  7 22:00:48 2020 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=e7a8e94b

sci-libs/nipy: deprecated old versions and PYTHON_COMPAT

Package-Manager: Portage-2.3.84, Repoman-2.3.20
Signed-off-by: Horea Christian  chymera.eu>

 sci-libs/nipy/nipy-0.4.0.ebuild | 36 
 sci-libs/nipy/nipy-0.4.1.ebuild |  4 ++--
 sci-libs/nipy/nipy-0.4.2.ebuild |  4 ++--
 sci-libs/nipy/nipy-.ebuild  |  4 ++--
 4 files changed, 6 insertions(+), 42 deletions(-)

diff --git a/sci-libs/nipy/nipy-0.4.0.ebuild b/sci-libs/nipy/nipy-0.4.0.ebuild
deleted file mode 100644
index ab2562f34..0
--- a/sci-libs/nipy/nipy-0.4.0.ebuild
+++ /dev/null
@@ -1,36 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
-
-inherit distutils-r1 eutils multilib flag-o-matic
-
-DESCRIPTION="Neuroimaging tools for Python"
-HOMEPAGE="http://nipy.org/;
-SRC_URI="mirror://pypi/${P:0:1}/${PN}/${P}.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND="
-   dev-python/prov[${PYTHON_USEDEP}]
-   sci-libs/scipy[${PYTHON_USEDEP}]
-   dev-python/sympy[${PYTHON_USEDEP}]
-   >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}]
-   dev-python/numpy[${PYTHON_USEDEP}]"
-DEPEND="${RDEPEND}
-   dev-python/setuptools[${PYTHON_USEDEP}]"
-
-python_prepare_all() {
-   distutils-r1_python_prepare_all
-   # bug #397605
-   [[ ${CHOST} == *-darwin* ]] \
-   && append-ldflags -bundle "-undefined dynamic_lookup" \
-   || append-ldflags -shared
-
-   # nipy uses the horrible numpy.distutils automagic
-}

diff --git a/sci-libs/nipy/nipy-0.4.1.ebuild b/sci-libs/nipy/nipy-0.4.1.ebuild
index 74ad89b9b..779329f40 100644
--- a/sci-libs/nipy/nipy-0.4.1.ebuild
+++ b/sci-libs/nipy/nipy-0.4.1.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2020 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
 
-PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
+PYTHON_COMPAT=( python3_6 )
 
 inherit distutils-r1 eutils multilib flag-o-matic
 

diff --git a/sci-libs/nipy/nipy-0.4.2.ebuild b/sci-libs/nipy/nipy-0.4.2.ebuild
index 6da963822..7afdf0053 100644
--- a/sci-libs/nipy/nipy-0.4.2.ebuild
+++ b/sci-libs/nipy/nipy-0.4.2.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2020 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
 
-PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
+PYTHON_COMPAT=( python3_6 )
 
 inherit distutils-r1 eutils multilib flag-o-matic
 

diff --git a/sci-libs/nipy/nipy-.ebuild b/sci-libs/nipy/nipy-.ebuild
index 658e8d984..57a994b69 100644
--- a/sci-libs/nipy/nipy-.ebuild
+++ b/sci-libs/nipy/nipy-.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2020 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
 
-PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
+PYTHON_COMPAT=( python3_6 )
 
 inherit distutils-r1 multilib git-r3 flag-o-matic

[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/

2018-07-31 Thread Horea Christian 
commit: 3cbee5be144730e605f7f483a6a535b7bacbe9d2
Author: Horea Christian  yandex  com>
AuthorDate: Tue Jul 31 12:20:33 2018 +
Commit: Horea Christian  gmail  com>
CommitDate: Tue Jul 31 12:20:33 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=3cbee5be

sci-libs/nipy: Version bump and removed deprecated version

Package-Manager: Portage-2.3.44, Repoman-2.3.10

 sci-libs/nipy/nipy-0.3.0.ebuild | 35 ---
 sci-libs/nipy/nipy-0.4.2.ebuild | 53 +
 2 files changed, 53 insertions(+), 35 deletions(-)

diff --git a/sci-libs/nipy/nipy-0.3.0.ebuild b/sci-libs/nipy/nipy-0.3.0.ebuild
deleted file mode 100644
index 7303490c9..0
--- a/sci-libs/nipy/nipy-0.3.0.ebuild
+++ /dev/null
@@ -1,35 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit distutils-r1 eutils multilib flag-o-matic
-
-DESCRIPTION="Neuroimaging tools for Python"
-HOMEPAGE="http://nipy.org/;
-SRC_URI="mirror://pypi/${P:0:1}/${PN}/${P}.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND="
-   sci-libs/scipy[${PYTHON_USEDEP}]
-   dev-python/sympy[${PYTHON_USEDEP}]
-   >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}]
-   dev-python/numpy[${PYTHON_USEDEP}]"
-DEPEND="${RDEPEND}
-   dev-python/setuptools[${PYTHON_USEDEP}]"
-
-python_prepare_all() {
-   distutils-r1_python_prepare_all
-   # bug #397605
-   [[ ${CHOST} == *-darwin* ]] \
-   && append-ldflags -bundle "-undefined dynamic_lookup" \
-   || append-ldflags -shared
-
-   # nipy uses the horrible numpy.distutils automagic
-}

diff --git a/sci-libs/nipy/nipy-0.4.2.ebuild b/sci-libs/nipy/nipy-0.4.2.ebuild
new file mode 100644
index 0..6da963822
--- /dev/null
+++ b/sci-libs/nipy/nipy-0.4.2.ebuild
@@ -0,0 +1,53 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
+
+inherit distutils-r1 eutils multilib flag-o-matic
+
+DESCRIPTION="Neuroimaging tools for Python"
+HOMEPAGE="http://nipy.org/;
+SRC_URI="https://github.com/${PN}/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE=""
+
+RDEPEND="
+   dev-python/prov[${PYTHON_USEDEP}]
+   sci-libs/scipy[${PYTHON_USEDEP}]
+   dev-python/sympy[${PYTHON_USEDEP}]
+   >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}]
+   dev-python/numpy[${PYTHON_USEDEP}]
+   "
+
+DEPEND="
+   ${RDEPEND}
+   dev-python/setuptools[${PYTHON_USEDEP}]
+   "
+
+python_prepare_all() {
+   distutils-r1_python_prepare_all
+   # bug #397605
+   [[ ${CHOST} == *-darwin* ]] \
+   && append-ldflags -bundle "-undefined dynamic_lookup" \
+   || append-ldflags -shared
+
+   # nipy uses the horrible numpy.distutils automagic
+}
+
+python_test() {
+   distutils-r1_install_for_testing
+   cp nipy/testing/*.nii.gz "${BUILD_DIR}/lib/nipy/testing/"
+   cp nipy/modalities/fmri/tests/*.{mat,npz,txt} 
"${BUILD_DIR}/lib/nipy/modalities/fmri/tests/"
+   cp nipy/algorithms/statistics/models/tests/test_data.bin 
"${BUILD_DIR}/lib/nipy/algorithms/statistics/models/tests"
+   cp nipy/labs/spatial_models/tests/some_blobs.nii 
"${BUILD_DIR}/lib/nipy/labs/spatial_models/tests/some_blobs.nii"
+   mkdir "${BUILD_DIR}/lib/nipy/algorithms/diagnostics/tests/data/"
+   cp nipy/algorithms/diagnostics/tests/data/tsdiff_results.mat 
"${BUILD_DIR}/lib/nipy/algorithms/diagnostics/tests/data/"
+   cd "${BUILD_DIR}" || die
+   echo "backend : agg" > matplotlibrc
+   nosetests || die
+}

[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/

2018-07-30 Thread Horea Christian 
commit: 8e1eb896a971f81943b09bf9ae25690543b4a30e
Author: Horea Christian  yandex  com>
AuthorDate: Mon Jul 30 11:51:31 2018 +
Commit: Horea Christian  gmail  com>
CommitDate: Mon Jul 30 11:51:31 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=8e1eb896

sci-libs/nipy: EAPI and PYTHON_COMPAT bump

Package-Manager: Portage-2.3.44, Repoman-2.3.10

 sci-libs/nipy/nipy-0.4.0.ebuild | 6 +++---
 sci-libs/nipy/nipy-0.4.1.ebuild | 6 +++---
 sci-libs/nipy/nipy-.ebuild  | 6 +++---
 3 files changed, 9 insertions(+), 9 deletions(-)

diff --git a/sci-libs/nipy/nipy-0.4.0.ebuild b/sci-libs/nipy/nipy-0.4.0.ebuild
index 4db0b9597..ab2562f34 100644
--- a/sci-libs/nipy/nipy-0.4.0.ebuild
+++ b/sci-libs/nipy/nipy-0.4.0.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
+EAPI=7
 
-PYTHON_COMPAT=( python{2_7,3_4,3_5} )
+PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
 
 inherit distutils-r1 eutils multilib flag-o-matic
 

diff --git a/sci-libs/nipy/nipy-0.4.1.ebuild b/sci-libs/nipy/nipy-0.4.1.ebuild
index a886c1c42..74ad89b9b 100644
--- a/sci-libs/nipy/nipy-0.4.1.ebuild
+++ b/sci-libs/nipy/nipy-0.4.1.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
+EAPI=7
 
-PYTHON_COMPAT=( python{2_7,3_4,3_5} )
+PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
 
 inherit distutils-r1 eutils multilib flag-o-matic
 

diff --git a/sci-libs/nipy/nipy-.ebuild b/sci-libs/nipy/nipy-.ebuild
index b9357a72f..658e8d984 100644
--- a/sci-libs/nipy/nipy-.ebuild
+++ b/sci-libs/nipy/nipy-.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
+EAPI=7
 
-PYTHON_COMPAT=( python{2_7,3_4,3_5} )
+PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
 
 inherit distutils-r1 multilib git-r3 flag-o-matic

[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/

2017-08-24 Thread Benda XU 
commit: 18271c7c67a0bf33cacbee05217c8abd536e9f15
Author: Horea Christian  yandex  com>
AuthorDate: Thu Aug 10 13:51:08 2017 +
Commit: Benda XU  gentoo  org>
CommitDate: Fri Aug 25 04:03:31 2017 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=18271c7c

sci-libs/nipy: version bump

Package-Manager: Portage-2.3.6, Repoman-2.3.3

 sci-libs/nipy/metadata.xml  | 28 ++--
 sci-libs/nipy/nipy-0.4.1.ebuild | 40 
 2 files changed, 54 insertions(+), 14 deletions(-)

diff --git a/sci-libs/nipy/metadata.xml b/sci-libs/nipy/metadata.xml
index 940d59042..16398ad90 100644
--- a/sci-libs/nipy/metadata.xml
+++ b/sci-libs/nipy/metadata.xml
@@ -1,18 +1,18 @@
 
 http://www.gentoo.org/dtd/metadata.dtd;>
 
-  
-horea.chr...@gmail.com
-Horea Christian
-  
-  
-s...@gentoo.org
-Gentoo Science Project
-  
-  
-   NIPY is a python project for analysis of structural and functional 
neuroimaging data.
-  
-  
-nipy
-  
+   
+   horea.chr...@gmail.com
+   Horea Christian
+   
+   
+   s...@gentoo.org
+   Gentoo Science Project
+   
+   
+   NIPY is a python project for analysis of structural and 
functional neuroimaging data.
+   
+   
+   nipy
+   
 

diff --git a/sci-libs/nipy/nipy-0.4.1.ebuild b/sci-libs/nipy/nipy-0.4.1.ebuild
new file mode 100644
index 0..a886c1c42
--- /dev/null
+++ b/sci-libs/nipy/nipy-0.4.1.ebuild
@@ -0,0 +1,40 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python{2_7,3_4,3_5} )
+
+inherit distutils-r1 eutils multilib flag-o-matic
+
+DESCRIPTION="Neuroimaging tools for Python"
+HOMEPAGE="http://nipy.org/;
+SRC_URI="https://github.com/${PN}/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE=""
+
+RDEPEND="
+   dev-python/prov[${PYTHON_USEDEP}]
+   sci-libs/scipy[${PYTHON_USEDEP}]
+   dev-python/sympy[${PYTHON_USEDEP}]
+   >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}]
+   dev-python/numpy[${PYTHON_USEDEP}]
+   "
+
+DEPEND="
+   ${RDEPEND}
+   dev-python/setuptools[${PYTHON_USEDEP}]
+   "
+
+python_prepare_all() {
+   distutils-r1_python_prepare_all
+   # bug #397605
+   [[ ${CHOST} == *-darwin* ]] \
+   && append-ldflags -bundle "-undefined dynamic_lookup" \
+   || append-ldflags -shared
+
+   # nipy uses the horrible numpy.distutils automagic
+}

[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/

2016-08-14 Thread Justin Lecher 
commit: e42015ed624b0fea7cc44839bf6670aded6c7e96
Author: Justin Lecher  gentoo  org>
AuthorDate: Sun Aug 14 19:23:49 2016 +
Commit: Justin Lecher  gentoo  org>
CommitDate: Sun Aug 14 19:24:15 2016 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=e42015ed

sci-libs/nipy: Add missing dep

Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=589312

Package-Manager: portage-2.3.0
Signed-off-by: Justin Lecher  gentoo.org>

 sci-libs/nipy/nipy-0.4.0.ebuild | 3 ++-
 sci-libs/nipy/nipy-.ebuild  | 3 ++-
 2 files changed, 4 insertions(+), 2 deletions(-)

diff --git a/sci-libs/nipy/nipy-0.4.0.ebuild b/sci-libs/nipy/nipy-0.4.0.ebuild
index ae7d99c..5cb4a33 100644
--- a/sci-libs/nipy/nipy-0.4.0.ebuild
+++ b/sci-libs/nipy/nipy-0.4.0.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
@@ -18,6 +18,7 @@ KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
 IUSE=""
 
 RDEPEND="
+   dev-python/prov[${PYTHON_USEDEP}]
sci-libs/scipy[${PYTHON_USEDEP}]
dev-python/sympy[${PYTHON_USEDEP}]
>=sci-libs/nibabel-1.2[${PYTHON_USEDEP}]

diff --git a/sci-libs/nipy/nipy-.ebuild b/sci-libs/nipy/nipy-.ebuild
index 72f40e6..8e48a80 100644
--- a/sci-libs/nipy/nipy-.ebuild
+++ b/sci-libs/nipy/nipy-.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
@@ -19,6 +19,7 @@ IUSE=""
 KEYWORDS=""
 
 DEPEND="
+   dev-python/prov[${PYTHON_USEDEP}]
dev-python/setuptools[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]"
 RDEPEND="${DEPEND}

[gentoo-commits] proj/sci:master commit in: sci-libs/nipy-templates/, sci-libs/nipy-data/

2016-02-12 Thread Justin Lecher 
commit: 68db4575a96e18e076410392cc25005009ae3a34
Author: Justin Lecher  gentoo  org>
AuthorDate: Fri Feb 12 08:41:30 2016 +
Commit: Justin Lecher  gentoo  org>
CommitDate: Fri Feb 12 08:41:30 2016 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=68db4575

Fix more herds usages

Signed-off-by: Justin Lecher  gentoo.org>

 sci-libs/nipy-data/metadata.xml  | 7 +--
 sci-libs/nipy-templates/metadata.xml | 7 +--
 2 files changed, 10 insertions(+), 4 deletions(-)

diff --git a/sci-libs/nipy-data/metadata.xml b/sci-libs/nipy-data/metadata.xml
index d95784a..4950887 100644
--- a/sci-libs/nipy-data/metadata.xml
+++ b/sci-libs/nipy-data/metadata.xml
@@ -1,11 +1,14 @@
 
 http://www.gentoo.org/dtd/metadata.dtd;>
 
-  sci
-  
+  
 h@mail.ru
 Horea Christian
   
+  
+s...@gentoo.org
+Gentoo Science Project
+  
   
Nipy-data is a package containing data files needed for many nipy demo 
tutorials.
 

diff --git a/sci-libs/nipy-templates/metadata.xml 
b/sci-libs/nipy-templates/metadata.xml
index 46539ff..335e280 100644
--- a/sci-libs/nipy-templates/metadata.xml
+++ b/sci-libs/nipy-templates/metadata.xml
@@ -1,11 +1,14 @@
 
 http://www.gentoo.org/dtd/metadata.dtd;>
 
-  sci
-  
+  
 h@mail.ru
 Horea Christian
   
+  
+s...@gentoo.org
+Gentoo Science Project
+  
   
Nipy-templates is a package containing template files needed by some 
nipy functions.

[gentoo-commits] proj/sci:master commit in: sci-libs/nipy-data/

2016-02-08 Thread Marius Brehler 
commit: 1de50698e5e7d8fde34771e2ff382f67f3ce96df
Author: Horea Christian  mail  ru>
AuthorDate: Fri Feb  5 16:01:56 2016 +
Commit: Marius Brehler  linux  sungazer  de>
CommitDate: Fri Feb  5 16:01:56 2016 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=1de50698

sci-libs/nipy-data: EAPI 6

Package-Manager: portage-2.2.27

 sci-libs/nipy-data/nipy-data-0.2.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-libs/nipy-data/nipy-data-0.2.ebuild 
b/sci-libs/nipy-data/nipy-data-0.2.ebuild
index fbec5c4..b8521f4 100644
--- a/sci-libs/nipy-data/nipy-data-0.2.ebuild
+++ b/sci-libs/nipy-data/nipy-data-0.2.ebuild
@@ -2,7 +2,7 @@
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
-EAPI=5
+EAPI=6
 
 PYTHON_COMPAT=( python2_7 )

[gentoo-commits] proj/sci:master commit in: sci-libs/nipy-templates/

2016-02-08 Thread Marius Brehler 
commit: b03e02f96b5296231157912581b0a00f85146db7
Author: Horea Christian  mail  ru>
AuthorDate: Fri Feb  5 16:01:12 2016 +
Commit: Marius Brehler  linux  sungazer  de>
CommitDate: Fri Feb  5 16:01:12 2016 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=b03e02f9

sci-libs/nipy-templates: new ebuild

Package-Manager: portage-2.2.27

 sci-libs/nipy-templates/metadata.xml  | 12 
 sci-libs/nipy-templates/nipy-templates-0.2.ebuild | 21 +
 2 files changed, 33 insertions(+)

diff --git a/sci-libs/nipy-templates/metadata.xml 
b/sci-libs/nipy-templates/metadata.xml
new file mode 100644
index 000..46539ff
--- /dev/null
+++ b/sci-libs/nipy-templates/metadata.xml
@@ -0,0 +1,12 @@
+
+http://www.gentoo.org/dtd/metadata.dtd;>
+
+  sci
+  
+h@mail.ru
+Horea Christian
+  
+  
+   Nipy-templates is a package containing template files needed by some 
nipy functions.
+
+

diff --git a/sci-libs/nipy-templates/nipy-templates-0.2.ebuild 
b/sci-libs/nipy-templates/nipy-templates-0.2.ebuild
new file mode 100644
index 000..d1de919
--- /dev/null
+++ b/sci-libs/nipy-templates/nipy-templates-0.2.ebuild
@@ -0,0 +1,21 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit distutils-r1
+
+DESCRIPTION="Normalization templates for Python Neuroimaging"
+HOMEPAGE="http://nipy.org/;
+SRC_URI="http://nipy.org/data-packages/${P}.tar.gz;
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE=""
+
+RDEPEND=""
+DEPEND=""

[gentoo-commits] proj/sci:master commit in: sci-libs/nipy-data/

2016-02-08 Thread Marius Brehler 
commit: cc12ab13b6d3e6a0192a27f61f52fec2b2b625a3
Author: Horea Christian  mail  ru>
AuthorDate: Fri Feb  5 15:58:45 2016 +
Commit: Marius Brehler  linux  sungazer  de>
CommitDate: Fri Feb  5 15:58:45 2016 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=cc12ab13

sci-libs/nipy-data: removed changelog clutter

Package-Manager: portage-2.2.27

 sci-libs/nipy-data/ChangeLog | 42 --
 1 file changed, 42 deletions(-)

diff --git a/sci-libs/nipy-data/ChangeLog b/sci-libs/nipy-data/ChangeLog
deleted file mode 100644
index f56e44b..000
--- a/sci-libs/nipy-data/ChangeLog
+++ /dev/null
@@ -1,42 +0,0 @@
-# ChangeLog for sci-libs/nipy-data
-# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Id$
-
-<<< HEAD
-<<< HEAD
-<<< HEAD
-  19 Dec 2015; Horea Christian  nipy-data-0.2.ebuild:
-  sci-libs/nipy-data: removed unused eclasses, updated description
-
-  17 Dec 2015; Horea Christian  nipy-data-0.2.ebuild:
-  sci-libs/nipy-data: no stable packages in the overlay
-
-  17 Dec 2015; Horea Christian  nipy-data-0.2.ebuild:
-  sci-libs/nipy-data: removed emtpy deps
-
-  17 Dec 2015; Horea Christian  nipy-data-0.2.ebuild:
-  sci-libs/nipy-data: marked package as stable
-
-===
->>> 6e709b8... sci-libs/nipy-data: new package
-===
-===
-  19 Dec 2015; Horea Christian  nipy-data-0.2.ebuild:
-  sci-libs/nipy-data: removed unused eclasses, updated description
-
->>> 841343a... sci-libs/nipy-data: removed unused eclasses, updated 
description
-  17 Dec 2015; Horea Christian  nipy-data-0.2.ebuild:
-  sci-libs/nipy-data: no stable packages in the overlay
-
-  17 Dec 2015; Horea Christian  nipy-data-0.2.ebuild:
-  sci-libs/nipy-data: removed emtpy deps
-
-  17 Dec 2015; Horea Christian  nipy-data-0.2.ebuild:
-  sci-libs/nipy-data: marked package as stable
-
->>> f7adcb4... sci-libs/nipy-data: marked package as stable
-*nipy-data-0.2 (16 Dec 2015)
-
-  16 Dec 2015; Horea Christian  +metadata.xml,
-  +nipy-data-0.2.ebuild:
-  sci-libs/nipy-data: new package

[gentoo-commits] proj/sci:master commit in: sci-libs/nipy-data/

2016-02-08 Thread Marius Brehler 
commit: bd5c9e320df505d2b3a86aba21b3ef9e682f6fea
Author: Horea Christian  mail  ru>
AuthorDate: Fri Feb  5 15:57:38 2016 +
Commit: Marius Brehler  linux  sungazer  de>
CommitDate: Fri Feb  5 15:57:38 2016 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=bd5c9e32

sci-libs/nipy-data: new package

Package-Manager: portage-2.2.27

 sci-libs/nipy-data/ChangeLog| 42 +
 sci-libs/nipy-data/metadata.xml | 12 ++
 sci-libs/nipy-data/nipy-data-0.2.ebuild | 21 +
 3 files changed, 75 insertions(+)

diff --git a/sci-libs/nipy-data/ChangeLog b/sci-libs/nipy-data/ChangeLog
new file mode 100644
index 000..f56e44b
--- /dev/null
+++ b/sci-libs/nipy-data/ChangeLog
@@ -0,0 +1,42 @@
+# ChangeLog for sci-libs/nipy-data
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Id$
+
+<<< HEAD
+<<< HEAD
+<<< HEAD
+  19 Dec 2015; Horea Christian  nipy-data-0.2.ebuild:
+  sci-libs/nipy-data: removed unused eclasses, updated description
+
+  17 Dec 2015; Horea Christian  nipy-data-0.2.ebuild:
+  sci-libs/nipy-data: no stable packages in the overlay
+
+  17 Dec 2015; Horea Christian  nipy-data-0.2.ebuild:
+  sci-libs/nipy-data: removed emtpy deps
+
+  17 Dec 2015; Horea Christian  nipy-data-0.2.ebuild:
+  sci-libs/nipy-data: marked package as stable
+
+===
+>>> 6e709b8... sci-libs/nipy-data: new package
+===
+===
+  19 Dec 2015; Horea Christian  nipy-data-0.2.ebuild:
+  sci-libs/nipy-data: removed unused eclasses, updated description
+
+>>> 841343a... sci-libs/nipy-data: removed unused eclasses, updated 
description
+  17 Dec 2015; Horea Christian  nipy-data-0.2.ebuild:
+  sci-libs/nipy-data: no stable packages in the overlay
+
+  17 Dec 2015; Horea Christian  nipy-data-0.2.ebuild:
+  sci-libs/nipy-data: removed emtpy deps
+
+  17 Dec 2015; Horea Christian  nipy-data-0.2.ebuild:
+  sci-libs/nipy-data: marked package as stable
+
+>>> f7adcb4... sci-libs/nipy-data: marked package as stable
+*nipy-data-0.2 (16 Dec 2015)
+
+  16 Dec 2015; Horea Christian  +metadata.xml,
+  +nipy-data-0.2.ebuild:
+  sci-libs/nipy-data: new package

diff --git a/sci-libs/nipy-data/metadata.xml b/sci-libs/nipy-data/metadata.xml
new file mode 100644
index 000..d95784a
--- /dev/null
+++ b/sci-libs/nipy-data/metadata.xml
@@ -0,0 +1,12 @@
+
+http://www.gentoo.org/dtd/metadata.dtd;>
+
+  sci
+  
+h@mail.ru
+Horea Christian
+  
+  
+   Nipy-data is a package containing data files needed for many nipy demo 
tutorials.
+
+

diff --git a/sci-libs/nipy-data/nipy-data-0.2.ebuild 
b/sci-libs/nipy-data/nipy-data-0.2.ebuild
new file mode 100644
index 000..fbec5c4
--- /dev/null
+++ b/sci-libs/nipy-data/nipy-data-0.2.ebuild
@@ -0,0 +1,21 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit distutils-r1
+
+DESCRIPTION="Demo Data for Python Neuroimaging"
+HOMEPAGE="http://nipy.org/;
+SRC_URI="http://nipy.org/data-packages/${P}.tar.gz;
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE=""
+
+RDEPEND=""
+DEPEND=""

[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/

2015-11-17 Thread Justin Lecher 
commit: 839c070eb0dfb5206b8f37dd87165fcecafa0eb5
Author: Horea Christian  mail  ru>
AuthorDate: Thu Nov 12 14:15:22 2015 +
Commit: Justin Lecher  gentoo  org>
CommitDate: Thu Nov 12 14:15:22 2015 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=839c070e

sci-libs/nipy: removed leading spaces

Package-Manager: portage-2.2.23

 sci-libs/nipy/ChangeLog |  4 
 sci-libs/nipy/nipy-0.3.0.ebuild | 10 +-
 sci-libs/nipy/nipy-0.4.0.ebuild | 10 +-
 3 files changed, 14 insertions(+), 10 deletions(-)

diff --git a/sci-libs/nipy/ChangeLog b/sci-libs/nipy/ChangeLog
index f63ab67..9061577 100644
--- a/sci-libs/nipy/ChangeLog
+++ b/sci-libs/nipy/ChangeLog
@@ -4,6 +4,10 @@
 
   12 Nov 2015; Horea Christian  nipy-0.3.0.ebuild,
   nipy-0.4.0.ebuild:
+  sci-libs/nipy: removed leading spaces
+
+  12 Nov 2015; Horea Christian  nipy-0.3.0.ebuild,
+  nipy-0.4.0.ebuild:
   sci-libs/nipy: updated dependency list
 
 *nipy-0.4.0 (11 Nov 2015)

diff --git a/sci-libs/nipy/nipy-0.3.0.ebuild b/sci-libs/nipy/nipy-0.3.0.ebuild
index 50878d9..ae7d99c 100644
--- a/sci-libs/nipy/nipy-0.3.0.ebuild
+++ b/sci-libs/nipy/nipy-0.3.0.ebuild
@@ -18,12 +18,12 @@ KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
 IUSE=""
 
 RDEPEND="
-sci-libs/scipy[${PYTHON_USEDEP}]
-dev-python/sympy[${PYTHON_USEDEP}]
->=sci-libs/nibabel-1.2[${PYTHON_USEDEP}]
-dev-python/numpy[${PYTHON_USEDEP}]"
+   sci-libs/scipy[${PYTHON_USEDEP}]
+   dev-python/sympy[${PYTHON_USEDEP}]
+   >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}]
+   dev-python/numpy[${PYTHON_USEDEP}]"
 DEPEND="${RDEPEND}
-dev-python/setuptools[${PYTHON_USEDEP}]"
+   dev-python/setuptools[${PYTHON_USEDEP}]"
 
 python_prepare_all() {
distutils-r1_python_prepare_all

diff --git a/sci-libs/nipy/nipy-0.4.0.ebuild b/sci-libs/nipy/nipy-0.4.0.ebuild
index 50878d9..ae7d99c 100644
--- a/sci-libs/nipy/nipy-0.4.0.ebuild
+++ b/sci-libs/nipy/nipy-0.4.0.ebuild
@@ -18,12 +18,12 @@ KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
 IUSE=""
 
 RDEPEND="
-sci-libs/scipy[${PYTHON_USEDEP}]
-dev-python/sympy[${PYTHON_USEDEP}]
->=sci-libs/nibabel-1.2[${PYTHON_USEDEP}]
-dev-python/numpy[${PYTHON_USEDEP}]"
+   sci-libs/scipy[${PYTHON_USEDEP}]
+   dev-python/sympy[${PYTHON_USEDEP}]
+   >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}]
+   dev-python/numpy[${PYTHON_USEDEP}]"
 DEPEND="${RDEPEND}
-dev-python/setuptools[${PYTHON_USEDEP}]"
+   dev-python/setuptools[${PYTHON_USEDEP}]"
 
 python_prepare_all() {
distutils-r1_python_prepare_all

[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/

2015-11-17 Thread Justin Lecher 
commit: 425559a02e6d6efc06f3fdc5be33ede0b8259e95
Author: Horea Christian  mail  ru>
AuthorDate: Thu Nov 12 14:14:03 2015 +
Commit: Justin Lecher  gentoo  org>
CommitDate: Thu Nov 12 14:14:03 2015 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=425559a0

sci-libs/nipy: updated dependency list

Package-Manager: portage-2.2.23

 sci-libs/nipy/ChangeLog |  4 
 sci-libs/nipy/nipy-0.3.0.ebuild | 16 
 sci-libs/nipy/nipy-0.4.0.ebuild | 14 +++---
 3 files changed, 19 insertions(+), 15 deletions(-)

diff --git a/sci-libs/nipy/ChangeLog b/sci-libs/nipy/ChangeLog
index 29eb490..f63ab67 100644
--- a/sci-libs/nipy/ChangeLog
+++ b/sci-libs/nipy/ChangeLog
@@ -2,6 +2,10 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Id$
 
+  12 Nov 2015; Horea Christian  nipy-0.3.0.ebuild,
+  nipy-0.4.0.ebuild:
+  sci-libs/nipy: updated dependency list
+
 *nipy-0.4.0 (11 Nov 2015)
 
   11 Nov 2015; Horea Christian  +nipy-0.4.0.ebuild:

diff --git a/sci-libs/nipy/nipy-0.3.0.ebuild b/sci-libs/nipy/nipy-0.3.0.ebuild
index d748c21..50878d9 100644
--- a/sci-libs/nipy/nipy-0.3.0.ebuild
+++ b/sci-libs/nipy/nipy-0.3.0.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
@@ -17,13 +17,13 @@ SLOT="0"
 KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
 IUSE=""
 
-DEPEND="
-   dev-python/setuptools[${PYTHON_USEDEP}]
-   dev-python/numpy[${PYTHON_USEDEP}]"
-RDEPEND="${DEPEND}
-   sci-libs/scipy[${PYTHON_USEDEP}]
-   dev-python/sympy[${PYTHON_USEDEP}]
-   >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}]"
+RDEPEND="
+sci-libs/scipy[${PYTHON_USEDEP}]
+dev-python/sympy[${PYTHON_USEDEP}]
+>=sci-libs/nibabel-1.2[${PYTHON_USEDEP}]
+dev-python/numpy[${PYTHON_USEDEP}]"
+DEPEND="${RDEPEND}
+dev-python/setuptools[${PYTHON_USEDEP}]"
 
 python_prepare_all() {
distutils-r1_python_prepare_all

diff --git a/sci-libs/nipy/nipy-0.4.0.ebuild b/sci-libs/nipy/nipy-0.4.0.ebuild
index e9d3f13..50878d9 100644
--- a/sci-libs/nipy/nipy-0.4.0.ebuild
+++ b/sci-libs/nipy/nipy-0.4.0.ebuild
@@ -17,13 +17,13 @@ SLOT="0"
 KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
 IUSE=""
 
-DEPEND="
-   dev-python/setuptools[${PYTHON_USEDEP}]
-   dev-python/numpy[${PYTHON_USEDEP}]"
-RDEPEND="${DEPEND}
-   sci-libs/scipy[${PYTHON_USEDEP}]
-   dev-python/sympy[${PYTHON_USEDEP}]
-   >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}]"
+RDEPEND="
+sci-libs/scipy[${PYTHON_USEDEP}]
+dev-python/sympy[${PYTHON_USEDEP}]
+>=sci-libs/nibabel-1.2[${PYTHON_USEDEP}]
+dev-python/numpy[${PYTHON_USEDEP}]"
+DEPEND="${RDEPEND}
+dev-python/setuptools[${PYTHON_USEDEP}]"
 
 python_prepare_all() {
distutils-r1_python_prepare_all

[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/

2015-11-17 Thread Justin Lecher 
commit: 11abed023da7f2d1fb261332dacf829a4c1a666b
Author: Horea Christian  mail  ru>
AuthorDate: Wed Nov 11 22:38:40 2015 +
Commit: Justin Lecher  gentoo  org>
CommitDate: Wed Nov 11 22:38:40 2015 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=11abed02

sci-libs/nipy: version bump

Package-Manager: portage-2.2.23

 sci-libs/nipy/ChangeLog |  8 ++--
 sci-libs/nipy/nipy-0.4.0.ebuild | 36 
 2 files changed, 42 insertions(+), 2 deletions(-)

diff --git a/sci-libs/nipy/ChangeLog b/sci-libs/nipy/ChangeLog
index cac9346..29eb490 100644
--- a/sci-libs/nipy/ChangeLog
+++ b/sci-libs/nipy/ChangeLog
@@ -1,8 +1,12 @@
 # ChangeLog for sci-libs/nipy
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Id$
 
+*nipy-0.4.0 (11 Nov 2015)
+
+  11 Nov 2015; Horea Christian  +nipy-0.4.0.ebuild:
+  sci-libs/nipy: version bump
+
   06 Jan 2014; Justin Lecher  nipy-0.3.0.ebuild,
   nipy-.ebuild, metadata.xml:
   Switch from git-2 to git-r3
-

diff --git a/sci-libs/nipy/nipy-0.4.0.ebuild b/sci-libs/nipy/nipy-0.4.0.ebuild
new file mode 100644
index 000..e9d3f13
--- /dev/null
+++ b/sci-libs/nipy/nipy-0.4.0.ebuild
@@ -0,0 +1,36 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit distutils-r1 eutils multilib flag-o-matic
+
+DESCRIPTION="Neuroimaging tools for Python"
+HOMEPAGE="http://nipy.org/;
+SRC_URI="mirror://pypi/${P:0:1}/${PN}/${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE=""
+
+DEPEND="
+   dev-python/setuptools[${PYTHON_USEDEP}]
+   dev-python/numpy[${PYTHON_USEDEP}]"
+RDEPEND="${DEPEND}
+   sci-libs/scipy[${PYTHON_USEDEP}]
+   dev-python/sympy[${PYTHON_USEDEP}]
+   >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}]"
+
+python_prepare_all() {
+   distutils-r1_python_prepare_all
+   # bug #397605
+   [[ ${CHOST} == *-darwin* ]] \
+   && append-ldflags -bundle "-undefined dynamic_lookup" \
+   || append-ldflags -shared
+
+   # nipy uses the horrible numpy.distutils automagic
+}

[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/, sci-chemistry/modeller/

2015-10-22 Thread Justin Lecher 
commit: 31e09304ca5401a29292a36e2e582f713cf7939b
Author: Justin Lecher  gentoo  org>
AuthorDate: Thu Oct 22 12:28:31 2015 +
Commit: Justin Lecher  gentoo  org>
CommitDate: Thu Oct 22 12:28:31 2015 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=31e09304

Drop deprecated parallel python eclass support

Signed-off-by: Justin Lecher  gentoo.org>

 sci-chemistry/modeller/modeller-9.12-r3.ebuild | 1 -
 sci-libs/nipy/nipy-0.3.0.ebuild| 1 -
 sci-libs/nipy/nipy-.ebuild | 1 -
 3 files changed, 3 deletions(-)

diff --git a/sci-chemistry/modeller/modeller-9.12-r3.ebuild 
b/sci-chemistry/modeller/modeller-9.12-r3.ebuild
index 292907f..c1a5d81 100644
--- a/sci-chemistry/modeller/modeller-9.12-r3.ebuild
+++ b/sci-chemistry/modeller/modeller-9.12-r3.ebuild
@@ -27,7 +27,6 @@ INPATH="${EPREFIX}"/opt/modeller${ver}
 
 QA_PREBUILT="/opt/*"
 
-DISTUTILS_NO_PARALLEL_BUILD=true
 
 pkg_setup() {
case ${ARCH} in

diff --git a/sci-libs/nipy/nipy-0.3.0.ebuild b/sci-libs/nipy/nipy-0.3.0.ebuild
index 6a07e3c..d748c21 100644
--- a/sci-libs/nipy/nipy-0.3.0.ebuild
+++ b/sci-libs/nipy/nipy-0.3.0.ebuild
@@ -5,7 +5,6 @@
 EAPI=5
 
 PYTHON_COMPAT=( python2_7 )
-DISTUTILS_NO_PARALLEL_BUILD=true
 
 inherit distutils-r1 eutils multilib flag-o-matic
 

diff --git a/sci-libs/nipy/nipy-.ebuild b/sci-libs/nipy/nipy-.ebuild
index 446065c..72f40e6 100644
--- a/sci-libs/nipy/nipy-.ebuild
+++ b/sci-libs/nipy/nipy-.ebuild
@@ -5,7 +5,6 @@
 EAPI=5
 
 PYTHON_COMPAT=( python2_7 )
-DISTUTILS_NO_PARALLEL_BUILD=true
 
 inherit distutils-r1 multilib git-r3 flag-o-matic