[gentoo-commits] proj/sci:master commit in: sci-libs/pybids/
commit: 10d07ab210cb625b4120362c45bf98e470015dfa Author: Horea Christian chymera eu> AuthorDate: Tue May 2 23:57:28 2023 + Commit: Horea Christian gmail com> CommitDate: Tue May 2 23:57:28 2023 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=10d07ab2 sci-libs/pybids: enable py3.11 Signed-off-by: Horea Christian chymera.eu> sci-libs/pybids/pybids-0.10.2.ebuild | 4 ++-- sci-libs/pybids/pybids-0.12.4.ebuild | 4 ++-- sci-libs/pybids/pybids-0.6.5.ebuild | 4 ++-- 3 files changed, 6 insertions(+), 6 deletions(-) diff --git a/sci-libs/pybids/pybids-0.10.2.ebuild b/sci-libs/pybids/pybids-0.10.2.ebuild index 8ddf531e8..5f2776855 100644 --- a/sci-libs/pybids/pybids-0.10.2.ebuild +++ b/sci-libs/pybids/pybids-0.10.2.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2022 Gentoo Authors +# Copyright 1999-2023 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=8 -PYTHON_COMPAT=( python3_10 ) +PYTHON_COMPAT=( python3_{10..11} ) inherit distutils-r1 diff --git a/sci-libs/pybids/pybids-0.12.4.ebuild b/sci-libs/pybids/pybids-0.12.4.ebuild index ffc9fad38..7860d69c9 100644 --- a/sci-libs/pybids/pybids-0.12.4.ebuild +++ b/sci-libs/pybids/pybids-0.12.4.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2022 Gentoo Authors +# Copyright 1999-2023 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=8 -PYTHON_COMPAT=( python3_10 ) +PYTHON_COMPAT=( python3_{10..11} ) DISTUTILS_USE_SETUPTOOLS=rdepend inherit distutils-r1 diff --git a/sci-libs/pybids/pybids-0.6.5.ebuild b/sci-libs/pybids/pybids-0.6.5.ebuild index 47262bccd..6103c3191 100644 --- a/sci-libs/pybids/pybids-0.6.5.ebuild +++ b/sci-libs/pybids/pybids-0.6.5.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2022 Gentoo Authors +# Copyright 1999-2023 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=8 -PYTHON_COMPAT=( python3_10 ) +PYTHON_COMPAT=( python3_{10..11} ) inherit distutils-r1
[gentoo-commits] proj/sci:master commit in: sci-libs/pybids/
commit: 40be0afedeb9322b8a7cef8c93315efbab71f334 Author: Horea Christian chymera eu> AuthorDate: Mon Jul 11 13:14:32 2022 + Commit: Horea Christian gmail com> CommitDate: Mon Jul 11 13:14:32 2022 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=40be0afe sci-libs/pybids: EAPI and PYTHON_COMPAT bump Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian chymera.eu> sci-libs/pybids/pybids-0.10.2.ebuild | 16 sci-libs/pybids/pybids-0.11.1.ebuild | 10 +++--- sci-libs/pybids/pybids-0.12.4.ebuild | 12 +--- sci-libs/pybids/pybids-0.6.5.ebuild | 6 +++--- 4 files changed, 15 insertions(+), 29 deletions(-) diff --git a/sci-libs/pybids/pybids-0.10.2.ebuild b/sci-libs/pybids/pybids-0.10.2.ebuild index 062cad939..1143655d7 100644 --- a/sci-libs/pybids/pybids-0.10.2.ebuild +++ b/sci-libs/pybids/pybids-0.10.2.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2020 Gentoo Authors +# Copyright 1999-2022 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=7 +EAPI=8 -PYTHON_COMPAT=( python3_{7..9} ) +PYTHON_COMPAT=( python3_{8..10} ) inherit distutils-r1 @@ -29,12 +29,4 @@ RDEPEND=" dev-python/scipy[${PYTHON_USEDEP}] " -#RESTRICT="test" -# Fails because fixtures are called directly -# https://github.com/bids-standard/pybids/issues/289#issuecomment-476853673 - -python_test() { - #rm bids/tests/test_config.py || die - distutils_install_for_testing - pytest -vv || die -} +distutils_enable_tests pytest diff --git a/sci-libs/pybids/pybids-0.11.1.ebuild b/sci-libs/pybids/pybids-0.11.1.ebuild index 062cad939..ef3534954 100644 --- a/sci-libs/pybids/pybids-0.11.1.ebuild +++ b/sci-libs/pybids/pybids-0.11.1.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2020 Gentoo Authors +# Copyright 1999-2022 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=7 +EAPI=8 -PYTHON_COMPAT=( python3_{7..9} ) +PYTHON_COMPAT=( python3_{8..10} ) inherit distutils-r1 @@ -29,10 +29,6 @@ RDEPEND=" dev-python/scipy[${PYTHON_USEDEP}] " -#RESTRICT="test" -# Fails because fixtures are called directly -# https://github.com/bids-standard/pybids/issues/289#issuecomment-476853673 - python_test() { #rm bids/tests/test_config.py || die distutils_install_for_testing diff --git a/sci-libs/pybids/pybids-0.12.4.ebuild b/sci-libs/pybids/pybids-0.12.4.ebuild index 40a8adc17..ace1712ce 100644 --- a/sci-libs/pybids/pybids-0.12.4.ebuild +++ b/sci-libs/pybids/pybids-0.12.4.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2021 Gentoo Authors +# Copyright 1999-2022 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=7 +EAPI=8 -PYTHON_COMPAT=( python3_{7..9} ) +PYTHON_COMPAT=( python3_{8..10} ) DISTUTILS_USE_SETUPTOOLS=rdepend inherit distutils-r1 @@ -16,9 +16,7 @@ LICENSE="MIT" SLOT="0" KEYWORDS="~amd64" -BDEPEND="dev-python/versioneer[${PYTHON_USEDEP}] - test? ( dev-python/mock[${PYTHON_USEDEP}] ) -" +BDEPEND="test? ( dev-python/mock[${PYTHON_USEDEP}] )" RDEPEND=" dev-python/click[${PYTHON_USEDEP}] @@ -32,4 +30,4 @@ RDEPEND=" dev-python/scipy[${PYTHON_USEDEP}] " -distutils_enable_tests --install pytest +distutils_enable_tests pytest diff --git a/sci-libs/pybids/pybids-0.6.5.ebuild b/sci-libs/pybids/pybids-0.6.5.ebuild index 521ef9947..ceb6784d1 100644 --- a/sci-libs/pybids/pybids-0.6.5.ebuild +++ b/sci-libs/pybids/pybids-0.6.5.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2020 Gentoo Authors +# Copyright 1999-2022 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=7 +EAPI=8 -PYTHON_COMPAT=( python3_{7..9} ) +PYTHON_COMPAT=( python3_{8..10} ) inherit distutils-r1
[gentoo-commits] proj/sci:master commit in: sci-libs/pybids/
commit: cfa78acee81888e98ef7caa9c8aac5935d80b09c Author: Horea Christian chymera eu> AuthorDate: Mon Jul 11 13:15:17 2022 + Commit: Horea Christian gmail com> CommitDate: Mon Jul 11 13:15:17 2022 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=cfa78ace sci-libs/pybids: dropped version with missing source Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian chymera.eu> sci-libs/pybids/pybids-0.11.1.ebuild | 36 1 file changed, 36 deletions(-) diff --git a/sci-libs/pybids/pybids-0.11.1.ebuild b/sci-libs/pybids/pybids-0.11.1.ebuild deleted file mode 100644 index ef3534954..0 --- a/sci-libs/pybids/pybids-0.11.1.ebuild +++ /dev/null @@ -1,36 +0,0 @@ -# Copyright 1999-2022 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_{8..10} ) - -inherit distutils-r1 - -DESCRIPTION="Python package to access BIDS datasets" -HOMEPAGE="https://github.com/INCF/pybids; -SRC_URI="https://github.com/INCF/pybids/archive/${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64" -IUSE="test" -RESTRICT="!test? ( test )" - -DEPEND="" -RDEPEND=" - dev-python/num2words[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] - dev-python/pandas[${PYTHON_USEDEP}] - dev-python/patsy[${PYTHON_USEDEP}] - dev-python/sqlalchemy[${PYTHON_USEDEP}] - sci-libs/bids-validator[${PYTHON_USEDEP}] - sci-libs/nibabel[${PYTHON_USEDEP}] - dev-python/scipy[${PYTHON_USEDEP}] - " - -python_test() { - #rm bids/tests/test_config.py || die - distutils_install_for_testing - pytest -vv || die -}
[gentoo-commits] proj/sci:master commit in: sci-libs/pybids/
commit: e0d35c2b7009878a724363143ce901f1ce031534 Author: Andrew Ammerlaan riseup net> AuthorDate: Fri Jan 15 20:42:58 2021 + Commit: Andrew Ammerlaan riseup net> CommitDate: Fri Jan 15 20:42:58 2021 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=e0d35c2b sci-libs/pybids: add version 0.12.4 cleaned up testing Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan riseup.net> sci-libs/pybids/pybids-0.12.4.ebuild | 35 +++ 1 file changed, 35 insertions(+) diff --git a/sci-libs/pybids/pybids-0.12.4.ebuild b/sci-libs/pybids/pybids-0.12.4.ebuild new file mode 100644 index 0..40a8adc17 --- /dev/null +++ b/sci-libs/pybids/pybids-0.12.4.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_{7..9} ) +DISTUTILS_USE_SETUPTOOLS=rdepend + +inherit distutils-r1 + +DESCRIPTION="Python package to access BIDS datasets" +HOMEPAGE="https://github.com/INCF/pybids; +SRC_URI="https://github.com/INCF/pybids/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64" + +BDEPEND="dev-python/versioneer[${PYTHON_USEDEP}] + test? ( dev-python/mock[${PYTHON_USEDEP}] ) +" + +RDEPEND=" + dev-python/click[${PYTHON_USEDEP}] + dev-python/num2words[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/pandas[${PYTHON_USEDEP}] + dev-python/patsy[${PYTHON_USEDEP}] + dev-python/sqlalchemy[${PYTHON_USEDEP}] + sci-libs/bids-validator[${PYTHON_USEDEP}] + sci-libs/nibabel[${PYTHON_USEDEP}] + dev-python/scipy[${PYTHON_USEDEP}] +" + +distutils_enable_tests --install pytest
[gentoo-commits] proj/sci:master commit in: sci-libs/pybids/
commit: ad34509e15c04118f50a620690f1b9c62058999a Author: Andrew Ammerlaan riseup net> AuthorDate: Fri Jan 15 20:31:44 2021 + Commit: Andrew Ammerlaan riseup net> CommitDate: Fri Jan 15 20:31:44 2021 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=ad34509e sci-libs/pybids: drop old, no supported python impls in compat Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan riseup.net> sci-libs/pybids/pybids-0.5.0.ebuild | 34 -- 1 file changed, 34 deletions(-) diff --git a/sci-libs/pybids/pybids-0.5.0.ebuild b/sci-libs/pybids/pybids-0.5.0.ebuild deleted file mode 100644 index 3534b3c6a..0 --- a/sci-libs/pybids/pybids-0.5.0.ebuild +++ /dev/null @@ -1,34 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_6 ) - -inherit distutils-r1 - -DESCRIPTION="Python package to access BIDS datasets" -HOMEPAGE="https://github.com/INCF/pybids; -SRC_URI="https://github.com/INCF/pybids/archive/${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64" -IUSE="" - -DEPEND=" - dev-python/setuptools[${PYTHON_USEDEP}] - " -RDEPEND=" - dev-python/grabbit[${PYTHON_USEDEP}] - dev-python/num2words[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] - dev-python/pandas[${PYTHON_USEDEP}] - dev-python/patsy[${PYTHON_USEDEP}] - dev-python/six[${PYTHON_USEDEP}] - sci-libs/nibabel[${PYTHON_USEDEP}] - dev-python/scipy[${PYTHON_USEDEP}] - " - -# Tests are broken: https://github.com/INCF/pybids/issues/138 -RESTRICT="test"
[gentoo-commits] proj/sci:master commit in: sci-libs/pybids/
commit: 4319913f04072bd0de979692c3836e0084399f3e Author: Horea Christian chymera eu> AuthorDate: Thu Dec 24 11:06:45 2020 + Commit: Horea Christian gmail com> CommitDate: Thu Dec 24 11:06:45 2020 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=4319913f sci-libs/pybids: conditional test restriction Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Horea Christian chymera.eu> sci-libs/pybids/pybids-0.10.2.ebuild | 1 + sci-libs/pybids/pybids-0.11.1.ebuild | 1 + 2 files changed, 2 insertions(+) diff --git a/sci-libs/pybids/pybids-0.10.2.ebuild b/sci-libs/pybids/pybids-0.10.2.ebuild index c35644b72..a2b3b1bbc 100644 --- a/sci-libs/pybids/pybids-0.10.2.ebuild +++ b/sci-libs/pybids/pybids-0.10.2.ebuild @@ -15,6 +15,7 @@ LICENSE="MIT" SLOT="0" KEYWORDS="~amd64" IUSE="test" +RESTRICT="!test? ( test )" DEPEND="" RDEPEND=" diff --git a/sci-libs/pybids/pybids-0.11.1.ebuild b/sci-libs/pybids/pybids-0.11.1.ebuild index c35644b72..a2b3b1bbc 100644 --- a/sci-libs/pybids/pybids-0.11.1.ebuild +++ b/sci-libs/pybids/pybids-0.11.1.ebuild @@ -15,6 +15,7 @@ LICENSE="MIT" SLOT="0" KEYWORDS="~amd64" IUSE="test" +RESTRICT="!test? ( test )" DEPEND="" RDEPEND="
[gentoo-commits] proj/sci:master commit in: sci-libs/pybids/
commit: bf5923e9a0967fa36e65a657c1944aec6b16 Author: Horea Christian chymera eu> AuthorDate: Wed Dec 23 08:19:01 2020 + Commit: Horea Christian gmail com> CommitDate: Wed Dec 23 08:19:01 2020 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=bf5923e9 sci-libs/pybids: updated PYTHON_COMPAT Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Horea Christian chymera.eu> sci-libs/pybids/pybids-0.10.2.ebuild | 2 +- sci-libs/pybids/pybids-0.11.1.ebuild | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/sci-libs/pybids/pybids-0.10.2.ebuild b/sci-libs/pybids/pybids-0.10.2.ebuild index 829f7a955..c35644b72 100644 --- a/sci-libs/pybids/pybids-0.10.2.ebuild +++ b/sci-libs/pybids/pybids-0.10.2.ebuild @@ -3,7 +3,7 @@ EAPI=7 -PYTHON_COMPAT=( python3_{6,7} ) +PYTHON_COMPAT=( python3_{6..9} ) inherit distutils-r1 diff --git a/sci-libs/pybids/pybids-0.11.1.ebuild b/sci-libs/pybids/pybids-0.11.1.ebuild index 829f7a955..c35644b72 100644 --- a/sci-libs/pybids/pybids-0.11.1.ebuild +++ b/sci-libs/pybids/pybids-0.11.1.ebuild @@ -3,7 +3,7 @@ EAPI=7 -PYTHON_COMPAT=( python3_{6,7} ) +PYTHON_COMPAT=( python3_{6..9} ) inherit distutils-r1
[gentoo-commits] proj/sci:master commit in: sci-libs/pybids/
commit: 7f758198d5fc1204ae7b778e60ffaed9bdceb9cb Author: Horea Christian chymera eu> AuthorDate: Wed Dec 23 08:14:02 2020 + Commit: Horea Christian gmail com> CommitDate: Wed Dec 23 08:16:24 2020 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=7f758198 sci-libs/pybids: updated PYTHON_COMPAT Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Horea Christian chymera.eu> sci-libs/pybids/pybids-0.6.5.ebuild | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/sci-libs/pybids/pybids-0.6.5.ebuild b/sci-libs/pybids/pybids-0.6.5.ebuild index aac0d1a65..27c9b92be 100644 --- a/sci-libs/pybids/pybids-0.6.5.ebuild +++ b/sci-libs/pybids/pybids-0.6.5.ebuild @@ -3,7 +3,7 @@ EAPI=7 -PYTHON_COMPAT=( python3_{6,7} ) +PYTHON_COMPAT=( python3_{6..9} ) inherit distutils-r1
[gentoo-commits] proj/sci:master commit in: sci-libs/pybids/
commit: 9495e0d02bb06635fdff3fdc4aa92cd2bbca77ba Author: Horea Christian chymera eu> AuthorDate: Sun Sep 20 00:42:17 2020 + Commit: Horea Christian gmail com> CommitDate: Sun Sep 20 00:42:17 2020 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=9495e0d0 sci-libs/pybids: version bump 0.11.1 Package-Manager: Portage-3.0.7, Repoman-3.0.1 Signed-off-by: Horea Christian chymera.eu> sci-libs/pybids/pybids-0.11.1.ebuild | 39 1 file changed, 39 insertions(+) diff --git a/sci-libs/pybids/pybids-0.11.1.ebuild b/sci-libs/pybids/pybids-0.11.1.ebuild new file mode 100644 index 0..8b30eeb0d --- /dev/null +++ b/sci-libs/pybids/pybids-0.11.1.ebuild @@ -0,0 +1,39 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_{6,7} ) + +inherit distutils-r1 + +DESCRIPTION="Python package to access BIDS datasets" +HOMEPAGE="https://github.com/INCF/pybids; +SRC_URI="https://github.com/INCF/pybids/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64" +IUSE="test" + +DEPEND="" +RDEPEND=" + dev-python/num2words[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/pandas[${PYTHON_USEDEP}] + dev-python/patsy[${PYTHON_USEDEP}] + dev-python/sqlalchemy[${PYTHON_USEDEP}] + sci-libs/bids-validator[${PYTHON_USEDEP}] + sci-libs/nibabel[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + " + +#RESTRICT="test" +# Fails because fixtures are called directly +# https://github.com/bids-standard/pybids/issues/289#issuecomment-476853673 + +python_test() { + #rm bids/tests/test_config.py || die + distutils_install_for_testing + pytest -vv || die +}
[gentoo-commits] proj/sci:master commit in: sci-libs/pybids/
commit: 44f1e176100adf8de5b8dcb9c460f23f2d70b3f6 Author: Horea Christian chymera eu> AuthorDate: Fri May 8 05:07:01 2020 + Commit: Horea Christian gmail com> CommitDate: Fri May 8 05:07:01 2020 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=44f1e176 sci-libs/pybids: updated PYTHON_COMPAT Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Horea Christian chymera.eu> sci-libs/pybids/pybids-0.6.5.ebuild | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/sci-libs/pybids/pybids-0.6.5.ebuild b/sci-libs/pybids/pybids-0.6.5.ebuild index 1a3e5aa5f..4aec991e7 100644 --- a/sci-libs/pybids/pybids-0.6.5.ebuild +++ b/sci-libs/pybids/pybids-0.6.5.ebuild @@ -3,7 +3,7 @@ EAPI=7 -PYTHON_COMPAT=( python3_6 ) +PYTHON_COMPAT=( python3_{6,7} ) inherit distutils-r1
[gentoo-commits] proj/sci:master commit in: sci-libs/pybids/
commit: b67c4e0c7656b37ec311b97eea56d384961b9b1c Author: Horea Christian chymera eu> AuthorDate: Tue Mar 24 07:23:08 2020 + Commit: Horea Christian gmail com> CommitDate: Tue Mar 24 07:23:08 2020 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=b67c4e0c sci-libs/pybids: version bump 0.10.2 and PYTHON_COMPAT update to include 3_7 Package-Manager: Portage-2.3.94, Repoman-2.3.21 Signed-off-by: Horea Christian chymera.eu> .../{pybids-.ebuild => pybids-0.10.2.ebuild} | 26 -- 1 file changed, 14 insertions(+), 12 deletions(-) diff --git a/sci-libs/pybids/pybids-.ebuild b/sci-libs/pybids/pybids-0.10.2.ebuild similarity index 51% rename from sci-libs/pybids/pybids-.ebuild rename to sci-libs/pybids/pybids-0.10.2.ebuild index 5d2e6eff9..8b30eeb0d 100644 --- a/sci-libs/pybids/pybids-.ebuild +++ b/sci-libs/pybids/pybids-0.10.2.ebuild @@ -3,35 +3,37 @@ EAPI=7 -PYTHON_COMPAT=( python{2_7,3_4,3_5} ) +PYTHON_COMPAT=( python3_{6,7} ) -inherit distutils-r1 git-r3 +inherit distutils-r1 DESCRIPTION="Python package to access BIDS datasets" HOMEPAGE="https://github.com/INCF/pybids; -SRC_URI="" -EGIT_REPO_URI="https://github.com/INCF/pybids; +SRC_URI="https://github.com/INCF/pybids/archive/${PV}.tar.gz -> ${P}.tar.gz" LICENSE="MIT" SLOT="0" -KEYWORDS="" +KEYWORDS="~amd64" IUSE="test" -DEPEND=" - dev-python/setuptools[${PYTHON_USEDEP}] - test? ( dev-python/pytest[${PYTHON_USEDEP}] ) - " +DEPEND="" RDEPEND=" - dev-python/grabbit[${PYTHON_USEDEP}] dev-python/num2words[${PYTHON_USEDEP}] dev-python/numpy[${PYTHON_USEDEP}] dev-python/pandas[${PYTHON_USEDEP}] dev-python/patsy[${PYTHON_USEDEP}] - dev-python/six[${PYTHON_USEDEP}] + dev-python/sqlalchemy[${PYTHON_USEDEP}] + sci-libs/bids-validator[${PYTHON_USEDEP}] sci-libs/nibabel[${PYTHON_USEDEP}] sci-libs/scipy[${PYTHON_USEDEP}] " +#RESTRICT="test" +# Fails because fixtures are called directly +# https://github.com/bids-standard/pybids/issues/289#issuecomment-476853673 + python_test() { - py.test -v || die + #rm bids/tests/test_config.py || die + distutils_install_for_testing + pytest -vv || die }
[gentoo-commits] proj/sci:master commit in: sci-libs/pybids/
commit: c939a6bdec9371a7e75811188895ea2ed70a4d54 Author: Horea Christian chymera eu> AuthorDate: Fri Jan 10 13:29:06 2020 + Commit: Horea Christian gmail com> CommitDate: Fri Jan 10 13:29:06 2020 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=c939a6bd sci-libs/pybids: version bump 0.6.5 Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Horea Christian chymera.eu> sci-libs/pybids/pybids-0.6.5.ebuild | 42 + 1 file changed, 42 insertions(+) diff --git a/sci-libs/pybids/pybids-0.6.5.ebuild b/sci-libs/pybids/pybids-0.6.5.ebuild new file mode 100644 index 0..1a3e5aa5f --- /dev/null +++ b/sci-libs/pybids/pybids-0.6.5.ebuild @@ -0,0 +1,42 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_6 ) + +inherit distutils-r1 + +DESCRIPTION="Python package to access BIDS datasets" +HOMEPAGE="https://github.com/INCF/pybids; +SRC_URI="https://github.com/INCF/pybids/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND=" + dev-python/setuptools[${PYTHON_USEDEP}] + " +RDEPEND=" + dev-python/grabbit[${PYTHON_USEDEP}] + dev-python/num2words[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/pandas[${PYTHON_USEDEP}] + dev-python/patsy[${PYTHON_USEDEP}] + dev-python/six[${PYTHON_USEDEP}] + sci-libs/nibabel[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + " + +RESTRICT="test" +# Fails because fixtures are called directly +# https://github.com/bids-standard/pybids/issues/289#issuecomment-476853673 + +python_test() { + rm bids/tests/test_config.py || die + distutils_install_for_testing + pytest -vv || die + die +}
[gentoo-commits] proj/sci:master commit in: sci-libs/pybids/
commit: 3977895bccf34df094284f397a583883a22c575a Author: Horea Christian chymera eu> AuthorDate: Fri Jan 10 13:26:49 2020 + Commit: Horea Christian gmail com> CommitDate: Fri Jan 10 13:26:49 2020 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=3977895b sci-libs/pybids: deprecated PYTHON_COMPAT Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Horea Christian chymera.eu> sci-libs/pybids/pybids-0.5.0.ebuild | 4 ++-- sci-libs/pybids/pybids-.ebuild | 4 ++-- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/sci-libs/pybids/pybids-0.5.0.ebuild b/sci-libs/pybids/pybids-0.5.0.ebuild index 65c268624..89c29a831 100644 --- a/sci-libs/pybids/pybids-0.5.0.ebuild +++ b/sci-libs/pybids/pybids-0.5.0.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2018 Gentoo Foundation +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 -PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} ) +PYTHON_COMPAT=( python3_6 ) inherit distutils-r1 diff --git a/sci-libs/pybids/pybids-.ebuild b/sci-libs/pybids/pybids-.ebuild index 397820db4..5d2e6eff9 100644 --- a/sci-libs/pybids/pybids-.ebuild +++ b/sci-libs/pybids/pybids-.ebuild @@ -1,7 +1,7 @@ -# Copyright 1999-2018 Gentoo Foundation +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=6 +EAPI=7 PYTHON_COMPAT=( python{2_7,3_4,3_5} )
[gentoo-commits] proj/sci:master commit in: sci-libs/pybids/
commit: 92ca536a253454cd4ba4a2f48d8664c8357a8e5f Author: Horea Christian yandex com> AuthorDate: Thu Aug 2 15:55:36 2018 + Commit: Horea Christian gmail com> CommitDate: Thu Aug 2 15:55:36 2018 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=92ca536a sci-libs/pybids: EAPI and PYTHON_COMPAT bump Package-Manager: Portage-2.3.44, Repoman-2.3.10 sci-libs/pybids/pybids-0.5.0.ebuild | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/sci-libs/pybids/pybids-0.5.0.ebuild b/sci-libs/pybids/pybids-0.5.0.ebuild index 2a2ecf29e..65c268624 100644 --- a/sci-libs/pybids/pybids-0.5.0.ebuild +++ b/sci-libs/pybids/pybids-0.5.0.ebuild @@ -1,9 +1,9 @@ # Copyright 1999-2018 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -EAPI=6 +EAPI=7 -PYTHON_COMPAT=( python{2_7,3_4,3_5} ) +PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} ) inherit distutils-r1
[gentoo-commits] proj/sci:master commit in: sci-libs/pybids/
commit: 8c25ca238bd0d2df7e204f6506d7258a6cdf1615 Author: Horea Christian yandex com> AuthorDate: Wed May 23 00:24:36 2018 + Commit: Horea Christian gmail com> CommitDate: Wed May 23 00:24:36 2018 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=8c25ca23 sci-libs/pybids: new package Package-Manager: Portage-2.3.38, Repoman-2.3.9 sci-libs/pybids/metadata.xml| 20 sci-libs/pybids/pybids-0.5.0.ebuild | 34 ++ sci-libs/pybids/pybids-.ebuild | 37 + 3 files changed, 91 insertions(+) diff --git a/sci-libs/pybids/metadata.xml b/sci-libs/pybids/metadata.xml new file mode 100644 index 0..143b3ea21 --- /dev/null +++ b/sci-libs/pybids/metadata.xml @@ -0,0 +1,20 @@ + +http://www.gentoo.org/dtd/metadata.dtd;> + + + horea.chr...@gmail.com + Horea Christian + + + s...@gentoo.org + Gentoo Science Project + + + PyBIDS is a Python library to centralize interactions with datasets + conforming BIDS (Brain Imaging Data Structure) format. For more + information about BIDS visit http://bids.neuroimaging.io. + + + INCF/pybids + + diff --git a/sci-libs/pybids/pybids-0.5.0.ebuild b/sci-libs/pybids/pybids-0.5.0.ebuild new file mode 100644 index 0..2a2ecf29e --- /dev/null +++ b/sci-libs/pybids/pybids-0.5.0.ebuild @@ -0,0 +1,34 @@ +# Copyright 1999-2018 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python{2_7,3_4,3_5} ) + +inherit distutils-r1 + +DESCRIPTION="Python package to access BIDS datasets" +HOMEPAGE="https://github.com/INCF/pybids; +SRC_URI="https://github.com/INCF/pybids/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND=" + dev-python/setuptools[${PYTHON_USEDEP}] + " +RDEPEND=" + dev-python/grabbit[${PYTHON_USEDEP}] + dev-python/num2words[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/pandas[${PYTHON_USEDEP}] + dev-python/patsy[${PYTHON_USEDEP}] + dev-python/six[${PYTHON_USEDEP}] + sci-libs/nibabel[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + " + +# Tests are broken: https://github.com/INCF/pybids/issues/138 +RESTRICT="test" diff --git a/sci-libs/pybids/pybids-.ebuild b/sci-libs/pybids/pybids-.ebuild new file mode 100644 index 0..397820db4 --- /dev/null +++ b/sci-libs/pybids/pybids-.ebuild @@ -0,0 +1,37 @@ +# Copyright 1999-2018 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python{2_7,3_4,3_5} ) + +inherit distutils-r1 git-r3 + +DESCRIPTION="Python package to access BIDS datasets" +HOMEPAGE="https://github.com/INCF/pybids; +SRC_URI="" +EGIT_REPO_URI="https://github.com/INCF/pybids; + +LICENSE="MIT" +SLOT="0" +KEYWORDS="" +IUSE="test" + +DEPEND=" + dev-python/setuptools[${PYTHON_USEDEP}] + test? ( dev-python/pytest[${PYTHON_USEDEP}] ) + " +RDEPEND=" + dev-python/grabbit[${PYTHON_USEDEP}] + dev-python/num2words[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/pandas[${PYTHON_USEDEP}] + dev-python/patsy[${PYTHON_USEDEP}] + dev-python/six[${PYTHON_USEDEP}] + sci-libs/nibabel[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + " + +python_test() { + py.test -v || die +}