commit: 132247f2a76e16d49fa38bfc3933ca61f4db78e6
Author: Andreas Sturmlechner <asturm <AT> gentoo <DOT> org>
AuthorDate: Sun Mar 7 16:51:50 2021 +0000
Commit: Andreas Sturmlechner <asturm <AT> gentoo <DOT> org>
CommitDate: Sun Mar 7 18:53:20 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=132247f2
sci-biology/uchime: EAPI-7 bump, use cmake.eclass, https, fix HOMEPAGE
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andreas Sturmlechner <asturm <AT> gentoo.org>
sci-biology/uchime/files/CMakeLists.txt | 7 ++++---
sci-biology/uchime/uchime-4.2.40.ebuild | 16 +++++++---------
2 files changed, 11 insertions(+), 12 deletions(-)
diff --git a/sci-biology/uchime/files/CMakeLists.txt
b/sci-biology/uchime/files/CMakeLists.txt
index 54b0a3ba0d3..a9319293e10 100644
--- a/sci-biology/uchime/files/CMakeLists.txt
+++ b/sci-biology/uchime/files/CMakeLists.txt
@@ -1,11 +1,12 @@
-cmake_minimum_required(VERSION 2.6)
+cmake_minimum_required(VERSION 2.8.12)
project(UCHIME)
+include(GNUInstallDirs)
+
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -D_FILE_OFFSET_BITS=64 -DUCHIMES=1")
# Simply copy the source files from the mk script
add_executable(uchime
addtargets2.cpp alignchime.cpp alignchimel.cpp
alnparams.cpp alpha.cpp alpha2.cpp fractid.cpp getparents.cpp globalalign2.cpp
make3way.cpp mx.cpp myutils.cpp path.cpp searchchime.cpp seqdb.cpp setnucmx.cpp
sfasta.cpp tracebackbit.cpp uchime_main.cpp usort.cpp viterbifast.cpp
writechhit.cpp)
-INSTALL(TARGETS uchime
- DESTINATION bin)
+INSTALL(TARGETS uchime DESTINATION ${CMAKE_INSTALL_BINDIR})
diff --git a/sci-biology/uchime/uchime-4.2.40.ebuild
b/sci-biology/uchime/uchime-4.2.40.ebuild
index dd2201547ae..75827ab3a30 100644
--- a/sci-biology/uchime/uchime-4.2.40.ebuild
+++ b/sci-biology/uchime/uchime-4.2.40.ebuild
@@ -1,18 +1,17 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=6
-
-inherit cmake-utils
+EAPI=7
MY_P="${PN}${PV}_src"
+inherit cmake
DESCRIPTION="Fast, accurate chimera detection"
-HOMEPAGE="http://www.drive5.com/uchime/";
-SRC_URI="http://drive5.com/${PN}/${MY_P}.tar.gz";
+HOMEPAGE="https://www.drive5.com/usearch/manual/uchime_algo.html";
+SRC_URI="https://www.drive5.com/${PN}/${MY_P}.tar.gz";
-SLOT="0"
LICENSE="public-domain"
+SLOT="0"
KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
IUSE="debug"
@@ -20,6 +19,5 @@ S="${WORKDIR}"/${MY_P}
src_prepare() {
cp "${FILESDIR}"/CMakeLists.txt . || die
-
- cmake-utils_src_prepare
+ cmake_src_prepare
}
